data_5O5E # _model_server_result.job_id v71VIYRA6A6TUWRCrhJOaA _model_server_result.datetime_utc '2025-02-18 02:27:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o5e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5O5E # _exptl.entry_id 5O5E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 830.916 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Tunicamycin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5O5E _cell.length_a 102.091 _cell.length_b 102.091 _cell.length_c 240.061 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O5E _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+7/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 51.0455 88.413399 280.071167 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C38 H62 N4 O16' _chem_comp.formula_weight 830.916 _chem_comp.id 9LH _chem_comp.mon_nstd_flag . _chem_comp.name Tunicamycin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O14 C36 9LH doub 1 n n C36 N3 9LH sing 2 n n C36 C35 9LH sing 3 n n N3 C37 9LH sing 4 n n C35 C34 9LH doub 5 n n C37 O15 9LH doub 6 n n C37 N2 9LH sing 7 n n C34 N2 9LH sing 8 n n N2 C31 9LH sing 9 n n C31 C32 9LH sing 10 n n C31 O11 9LH sing 11 n n C32 O12 9LH sing 12 n n C32 C33 9LH sing 13 n n O11 C30 9LH sing 14 n n C6 O4 9LH sing 15 n n C6 C5 9LH sing 16 n n C33 C30 9LH sing 17 n n C33 O13 9LH sing 18 n n O5 C7 9LH sing 19 n n C30 C 9LH sing 20 n n O C 9LH sing 21 n n C7 C5 9LH sing 22 n n C7 C8 9LH sing 23 n n C5 O3 9LH sing 24 n n C C1 9LH sing 25 n n O3 C4 9LH sing 26 n n O6 C8 9LH sing 27 n n C8 C9 9LH sing 28 n n C4 C9 9LH sing 29 n n C4 O2 9LH sing 30 n n C9 N 9LH sing 31 n n C1 C2 9LH sing 32 n n O7 C10 9LH doub 33 n n O1 C2 9LH sing 34 n n O1 C3 9LH sing 35 n n C2 C29 9LH sing 36 n n O2 C3 9LH sing 37 n n C3 C12 9LH sing 38 n n N C10 9LH sing 39 n n C10 C11 9LH sing 40 n n C29 C28 9LH sing 41 n n C29 O10 9LH sing 42 n n C12 C28 9LH sing 43 n n C12 N1 9LH sing 44 n n C28 O9 9LH sing 45 n n N1 C13 9LH sing 46 n n C13 C14 9LH sing 47 n n C13 O8 9LH doub 48 n n C14 C15 9LH doub 49 e n C15 C16 9LH sing 50 n n C22 C21 9LH sing 51 n n C22 C23 9LH sing 52 n n C16 C17 9LH sing 53 n n C27 C25 9LH sing 54 n n C24 C23 9LH sing 55 n n C24 C25 9LH sing 56 n n C18 C17 9LH sing 57 n n C18 C19 9LH sing 58 n n C21 C20 9LH sing 59 n n C25 C26 9LH sing 60 n n C20 C19 9LH sing 61 n n C2 H1 9LH sing 62 n n C1 H2 9LH sing 63 n n C1 H3 9LH sing 64 n n N H4 9LH sing 65 n n C3 H5 9LH sing 66 n n C4 H6 9LH sing 67 n n C5 H7 9LH sing 68 n n C6 H8 9LH sing 69 n n C6 H9 9LH sing 70 n n N3 H10 9LH sing 71 n n C35 H11 9LH sing 72 n n C34 H12 9LH sing 73 n n C31 H13 9LH sing 74 n n C32 H14 9LH sing 75 n n O12 H15 9LH sing 76 n n C33 H16 9LH sing 77 n n O13 H17 9LH sing 78 n n C30 H18 9LH sing 79 n n C H19 9LH sing 80 n n O H20 9LH sing 81 n n C29 H21 9LH sing 82 n n O10 H22 9LH sing 83 n n C28 H23 9LH sing 84 n n O9 H24 9LH sing 85 n n C12 H25 9LH sing 86 n n C9 H26 9LH sing 87 n n C11 H27 9LH sing 88 n n C11 H28 9LH sing 89 n n C11 H29 9LH sing 90 n n C8 H30 9LH sing 91 n n O6 H31 9LH sing 92 n n C7 H32 9LH sing 93 n n O5 H33 9LH sing 94 n n O4 H34 9LH sing 95 n n N1 H35 9LH sing 96 n n C14 H36 9LH sing 97 n n C15 H37 9LH sing 98 n n C16 H38 9LH sing 99 n n C16 H39 9LH sing 100 n n C17 H40 9LH sing 101 n n C17 H41 9LH sing 102 n n C18 H42 9LH sing 103 n n C18 H43 9LH sing 104 n n C19 H44 9LH sing 105 n n C19 H45 9LH sing 106 n n C20 H46 9LH sing 107 n n C20 H47 9LH sing 108 n n C21 H48 9LH sing 109 n n C21 H49 9LH sing 110 n n C22 H50 9LH sing 111 n n C22 H51 9LH sing 112 n n C23 H52 9LH sing 113 n n C23 H53 9LH sing 114 n n C24 H54 9LH sing 115 n n C24 H55 9LH sing 116 n n C25 H56 9LH sing 117 n n C27 H57 9LH sing 118 n n C27 H58 9LH sing 119 n n C27 H59 9LH sing 120 n n C26 H60 9LH sing 121 n n C26 H61 9LH sing 122 n n C26 H62 9LH sing 123 n n # _atom_sites.entry_id 5O5E _atom_sites.fract_transf_matrix[1][1] 0.009795 _atom_sites.fract_transf_matrix[1][2] 0.005655 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004166 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P6L A 1 501 1 P6L P6L . C 3 9LH A 1 502 1 9LH TUN . D 4 UNL A 1 503 1 UNL CDL . E 5 HOH A 1 601 10 HOH HOH . E 5 HOH A 2 602 4 HOH HOH . E 5 HOH A 3 603 5 HOH HOH . E 5 HOH A 4 604 6 HOH HOH . E 5 HOH A 5 605 1 HOH HOH . E 5 HOH A 6 606 8 HOH HOH . E 5 HOH A 7 607 7 HOH HOH . E 5 HOH A 8 608 3 HOH HOH . E 5 HOH A 9 609 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 9LH . . . C 3 34.467 54.2 133.621 1 141.82 ? C2 9LH 502 A 1 HETATM 2 C C1 9LH . . . C 3 33.097 54.187 132.975 1 142.21 ? C1 9LH 502 A 1 HETATM 3 O O2 9LH . . . C 3 36.73 56.993 133.926 1 140.66 ? O2 9LH 502 A 1 HETATM 4 O O3 9LH . . . C 3 37.171 56.885 131.605 1 134.61 ? O3 9LH 502 A 1 HETATM 5 N N 9LH . . . C 3 38.381 59.28 134.186 1 143.15 ? N 9LH 502 A 1 HETATM 6 C C3 9LH . . . C 3 36.317 55.647 133.986 1 141.65 ? C3 9LH 502 A 1 HETATM 7 C C4 9LH . . . C 3 37.636 57.302 132.884 1 138.25 ? C4 9LH 502 A 1 HETATM 8 C C5 9LH . . . C 3 36.008 57.589 131.117 1 133.35 ? C5 9LH 502 A 1 HETATM 9 C C6 9LH . . . C 3 35.668 56.97 129.786 1 132.46 ? C6 9LH 502 A 1 HETATM 10 O O15 9LH . . . C 3 30.538 56.403 126.242 1 141.65 ? O15 9LH 502 A 1 HETATM 11 C C37 9LH . . . C 3 31.298 55.443 126.238 1 141.35 ? C37 9LH 502 A 1 HETATM 12 N N3 9LH . . . C 3 31.863 54.965 125.079 1 141.32 ? N3 9LH 502 A 1 HETATM 13 C C36 9LH . . . C 3 32.738 53.899 124.958 1 141.3 ? C36 9LH 502 A 1 HETATM 14 O O14 9LH . . . C 3 33.176 53.586 123.844 1 141.42 ? O14 9LH 502 A 1 HETATM 15 C C35 9LH . . . C 3 33.05 53.238 126.185 1 141.88 ? C35 9LH 502 A 1 HETATM 16 C C34 9LH . . . C 3 32.5 53.671 127.333 1 142.03 ? C34 9LH 502 A 1 HETATM 17 N N2 9LH . . . C 3 31.626 54.738 127.38 1 141.69 ? N2 9LH 502 A 1 HETATM 18 C C31 9LH . . . C 3 31.021 55.17 128.657 1 143.29 ? C31 9LH 502 A 1 HETATM 19 O O11 9LH . . . C 3 32.058 55.423 129.586 1 144.45 ? O11 9LH 502 A 1 HETATM 20 C C32 9LH . . . C 3 30.049 54.159 129.283 1 143.38 ? C32 9LH 502 A 1 HETATM 21 O O12 9LH . . . C 3 28.843 54.795 129.688 1 143.33 ? O12 9LH 502 A 1 HETATM 22 C C33 9LH . . . C 3 30.834 53.622 130.483 1 144.85 ? C33 9LH 502 A 1 HETATM 23 O O13 9LH . . . C 3 29.985 53.337 131.591 1 146.65 ? O13 9LH 502 A 1 HETATM 24 C C30 9LH . . . C 3 31.792 54.76 130.831 1 144.39 ? C30 9LH 502 A 1 HETATM 25 C C 9LH . . . C 3 33.118 54.35 131.461 1 143.24 ? C 9LH 502 A 1 HETATM 26 O O 9LH . . . C 3 33.613 53.15 130.86 1 143.74 ? O 9LH 502 A 1 HETATM 27 C C29 9LH . . . C 3 34.514 53.656 135.051 1 144.16 ? C29 9LH 502 A 1 HETATM 28 O O10 9LH . . . C 3 33.588 54.329 135.901 1 145.39 ? O10 9LH 502 A 1 HETATM 29 C C28 9LH . . . C 3 35.931 53.765 135.614 1 144.34 ? C28 9LH 502 A 1 HETATM 30 O O9 9LH . . . C 3 35.929 53.439 136.999 1 145.16 ? O9 9LH 502 A 1 HETATM 31 C C12 9LH . . . C 3 36.516 55.166 135.423 1 142.95 ? C12 9LH 502 A 1 HETATM 32 C C9 9LH . . . C 3 37.943 58.799 132.886 1 139.57 ? C9 9LH 502 A 1 HETATM 33 C C10 9LH . . . C 3 39.49 60.005 134.353 1 144.28 ? C10 9LH 502 A 1 HETATM 34 O O7 9LH . . . C 3 40.378 60.044 133.502 1 145.43 ? O7 9LH 502 A 1 HETATM 35 C C11 9LH . . . C 3 39.571 60.793 135.625 1 143.43 ? C11 9LH 502 A 1 HETATM 36 C C8 9LH . . . C 3 36.756 59.616 132.386 1 137.38 ? C8 9LH 502 A 1 HETATM 37 O O6 9LH . . . C 3 37.153 60.979 132.289 1 138.73 ? O6 9LH 502 A 1 HETATM 38 C C7 9LH . . . C 3 36.283 59.091 131.037 1 134.46 ? C7 9LH 502 A 1 HETATM 39 O O5 9LH . . . C 3 35.084 59.769 130.688 1 133.8 ? O5 9LH 502 A 1 HETATM 40 O O4 9LH . . . C 3 35.897 55.568 129.8 1 133 ? O4 9LH 502 A 1 HETATM 41 O O1 9LH . . . C 3 34.959 55.547 133.596 1 140.82 ? O1 9LH 502 A 1 HETATM 42 N N1 9LH . . . C 3 37.929 55.179 135.759 1 143.19 ? N1 9LH 502 A 1 HETATM 43 C C13 9LH . . . C 3 38.505 56.16 136.474 1 144.69 ? C13 9LH 502 A 1 HETATM 44 O O8 9LH . . . C 3 37.86 57.148 136.88 1 144.67 ? O8 9LH 502 A 1 HETATM 45 C C14 9LH . . . C 3 39.952 55.972 136.728 1 146.19 ? C14 9LH 502 A 1 HETATM 46 C C15 9LH . . . C 3 40.659 56.831 137.435 1 147.46 ? C15 9LH 502 A 1 HETATM 47 C C16 9LH . . . C 3 42.113 56.713 137.753 1 148.44 ? C16 9LH 502 A 1 HETATM 48 C C17 9LH . . . C 3 42.698 57.991 138.335 1 150.34 ? C17 9LH 502 A 1 HETATM 49 C C18 9LH . . . C 3 44.195 58.121 138.14 1 152.24 ? C18 9LH 502 A 1 HETATM 50 C C19 9LH . . . C 3 45.043 57.567 139.27 1 154.6 ? C19 9LH 502 A 1 HETATM 51 C C20 9LH . . . C 3 46.51 57.407 138.904 1 156.81 ? C20 9LH 502 A 1 HETATM 52 C C21 9LH . . . C 3 46.819 56.08 138.222 1 158.52 ? C21 9LH 502 A 1 HETATM 53 C C22 9LH . . . C 3 48.222 55.915 137.657 1 159.68 ? C22 9LH 502 A 1 HETATM 54 C C23 9LH . . . C 3 49.349 55.823 138.675 1 160.48 ? C23 9LH 502 A 1 HETATM 55 C C24 9LH . . . C 3 50.684 55.432 138.055 1 161.31 ? C24 9LH 502 A 1 HETATM 56 C C25 9LH . . . C 3 51.933 55.68 138.876 1 161.62 ? C25 9LH 502 A 1 HETATM 57 C C27 9LH . . . C 3 53.141 55.88 137.977 1 161.92 ? C27 9LH 502 A 1 HETATM 58 C C26 9LH . . . C 3 52.194 54.591 139.908 1 161.22 ? C26 9LH 502 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 58 #