data_5O5W # _model_server_result.job_id 8LhuuwK_njEW5iEIy6Llzw _model_server_result.datetime_utc '2024-11-26 13:54:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o5w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 5O5W # _exptl.entry_id 5O5W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5O5W _cell.length_a 117.35 _cell.length_b 117.35 _cell.length_c 233.35 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O5W _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 117.35 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 58.675 101.628081 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 190 A GLU 190 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc2 A O PRO 227 A PRO 227 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc3 C O1B ATP . A ATP 301 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc4 C O2A ATP . A ATP 301 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc5 D MG MG . A MG 302 1_555 DA O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc6 D MG MG . A MG 302 1_555 DA O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5O5W _atom_sites.fract_transf_matrix[1][1] 0.008522 _atom_sites.fract_transf_matrix[1][2] 0.00492 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004285 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ATP A 1 301 301 ATP ATP . D 4 MG A 1 302 302 MG MG . E 5 8M0 A 1 303 303 8M0 8M0 . F 6 M10 A 1 304 304 M10 MO3 . G 7 MO A 1 305 306 MO MO . H 7 MO A 1 306 307 MO MO . I 7 MO A 1 307 308 MO MO . J 7 MO A 1 308 309 MO MO . K 7 MO A 1 309 308 MO MO . L 7 MO A 1 310 315 MO MO . M 7 MO A 1 311 319 MO MO . N 7 MO A 1 312 321 MO MO . O 5 8M0 B 1 301 302 8M0 8M0 . P 7 MO B 1 302 303 MO MO . Q 7 MO B 1 303 304 MO MO . R 7 MO B 1 304 305 MO MO . S 7 MO B 1 305 306 MO MO . T 7 MO B 1 306 307 MO MO . U 7 MO B 1 307 309 MO MO . V 7 MO B 1 308 310 MO MO . W 7 MO B 1 309 312 MO MO . X 7 MO B 1 310 313 MO MO . Y 7 MO B 1 311 314 MO MO . Z 7 MO B 1 312 316 MO MO . AA 7 MO B 1 313 317 MO MO . BA 7 MO B 1 314 318 MO MO . CA 7 MO B 1 315 322 MO MO . DA 8 HOH A 1 401 3 HOH HOH . DA 8 HOH A 2 402 25 HOH HOH . DA 8 HOH A 3 403 27 HOH HOH . DA 8 HOH A 4 404 53 HOH HOH . DA 8 HOH A 5 405 19 HOH HOH . DA 8 HOH A 6 406 102 HOH HOH . DA 8 HOH A 7 407 24 HOH HOH . DA 8 HOH A 8 408 21 HOH HOH . DA 8 HOH A 9 409 101 HOH HOH . DA 8 HOH A 10 410 202 HOH HOH . DA 8 HOH A 11 411 4 HOH HOH . DA 8 HOH A 12 412 35 HOH HOH . DA 8 HOH A 13 413 29 HOH HOH . DA 8 HOH A 14 414 33 HOH HOH . DA 8 HOH A 15 415 70 HOH HOH . DA 8 HOH A 16 416 15 HOH HOH . DA 8 HOH A 17 417 117 HOH HOH . DA 8 HOH A 18 418 22 HOH HOH . DA 8 HOH A 19 419 91 HOH HOH . DA 8 HOH A 20 420 23 HOH HOH . DA 8 HOH A 21 421 5 HOH HOH . DA 8 HOH A 22 422 107 HOH HOH . DA 8 HOH A 23 423 34 HOH HOH . DA 8 HOH A 24 424 38 HOH HOH . DA 8 HOH A 25 425 62 HOH HOH . DA 8 HOH A 26 426 40 HOH HOH . DA 8 HOH A 27 427 85 HOH HOH . DA 8 HOH A 28 428 129 HOH HOH . DA 8 HOH A 29 429 100 HOH HOH . DA 8 HOH A 30 430 32 HOH HOH . DA 8 HOH A 31 431 153 HOH HOH . DA 8 HOH A 32 432 171 HOH HOH . DA 8 HOH A 33 433 200 HOH HOH . DA 8 HOH A 34 434 26 HOH HOH . DA 8 HOH A 35 435 20 HOH HOH . DA 8 HOH A 36 436 42 HOH HOH . DA 8 HOH A 37 437 123 HOH HOH . DA 8 HOH A 38 438 183 HOH HOH . DA 8 HOH A 39 439 17 HOH HOH . DA 8 HOH A 40 440 93 HOH HOH . DA 8 HOH A 41 441 11 HOH HOH . DA 8 HOH A 42 442 139 HOH HOH . DA 8 HOH A 43 443 106 HOH HOH . DA 8 HOH A 44 444 8 HOH HOH . DA 8 HOH A 45 445 166 HOH HOH . DA 8 HOH A 46 446 7 HOH HOH . DA 8 HOH A 47 447 12 HOH HOH . DA 8 HOH A 48 448 126 HOH HOH . DA 8 HOH A 49 449 112 HOH HOH . DA 8 HOH A 50 450 137 HOH HOH . DA 8 HOH A 51 451 36 HOH HOH . DA 8 HOH A 52 452 158 HOH HOH . DA 8 HOH A 53 453 134 HOH HOH . DA 8 HOH A 54 454 47 HOH HOH . DA 8 HOH A 55 455 75 HOH HOH . DA 8 HOH A 56 456 49 HOH HOH . DA 8 HOH A 57 457 59 HOH HOH . DA 8 HOH A 58 458 128 HOH HOH . DA 8 HOH A 59 459 160 HOH HOH . DA 8 HOH A 60 460 155 HOH HOH . DA 8 HOH A 61 461 44 HOH HOH . DA 8 HOH A 62 462 130 HOH HOH . DA 8 HOH A 63 463 161 HOH HOH . DA 8 HOH A 64 464 10 HOH HOH . DA 8 HOH A 65 465 55 HOH HOH . DA 8 HOH A 66 466 14 HOH HOH . DA 8 HOH A 67 467 60 HOH HOH . DA 8 HOH A 68 468 65 HOH HOH . DA 8 HOH A 69 469 176 HOH HOH . DA 8 HOH A 70 470 45 HOH HOH . DA 8 HOH A 71 471 124 HOH HOH . DA 8 HOH A 72 472 46 HOH HOH . DA 8 HOH A 73 473 66 HOH HOH . DA 8 HOH A 74 474 16 HOH HOH . DA 8 HOH A 75 475 114 HOH HOH . DA 8 HOH A 76 476 162 HOH HOH . DA 8 HOH A 77 477 151 HOH HOH . DA 8 HOH A 78 478 207 HOH HOH . DA 8 HOH A 79 479 111 HOH HOH . DA 8 HOH A 80 480 135 HOH HOH . DA 8 HOH A 81 481 194 HOH HOH . DA 8 HOH A 82 482 9 HOH HOH . DA 8 HOH A 83 483 28 HOH HOH . DA 8 HOH A 84 484 41 HOH HOH . DA 8 HOH A 85 485 116 HOH HOH . DA 8 HOH A 86 486 54 HOH HOH . DA 8 HOH A 87 487 148 HOH HOH . DA 8 HOH A 88 488 175 HOH HOH . DA 8 HOH A 89 489 188 HOH HOH . DA 8 HOH A 90 490 198 HOH HOH . DA 8 HOH A 91 491 206 HOH HOH . DA 8 HOH A 92 492 6 HOH HOH . DA 8 HOH A 93 493 119 HOH HOH . DA 8 HOH A 94 494 109 HOH HOH . DA 8 HOH A 95 495 113 HOH HOH . DA 8 HOH A 96 496 203 HOH HOH . DA 8 HOH A 97 497 127 HOH HOH . DA 8 HOH A 98 498 50 HOH HOH . DA 8 HOH A 99 499 132 HOH HOH . DA 8 HOH A 100 500 147 HOH HOH . DA 8 HOH A 101 501 149 HOH HOH . DA 8 HOH A 102 502 103 HOH HOH . EA 8 HOH B 1 401 97 HOH HOH . EA 8 HOH B 2 402 120 HOH HOH . EA 8 HOH B 3 403 63 HOH HOH . EA 8 HOH B 4 404 61 HOH HOH . EA 8 HOH B 5 405 118 HOH HOH . EA 8 HOH B 6 406 18 HOH HOH . EA 8 HOH B 7 407 122 HOH HOH . EA 8 HOH B 8 408 121 HOH HOH . EA 8 HOH B 9 409 88 HOH HOH . EA 8 HOH B 10 410 31 HOH HOH . EA 8 HOH B 11 411 51 HOH HOH . EA 8 HOH B 12 412 99 HOH HOH . EA 8 HOH B 13 413 179 HOH HOH . EA 8 HOH B 14 414 141 HOH HOH . EA 8 HOH B 15 415 189 HOH HOH . EA 8 HOH B 16 416 105 HOH HOH . EA 8 HOH B 17 417 90 HOH HOH . EA 8 HOH B 18 418 72 HOH HOH . EA 8 HOH B 19 419 39 HOH HOH . EA 8 HOH B 20 420 104 HOH HOH . EA 8 HOH B 21 421 164 HOH HOH . EA 8 HOH B 22 422 190 HOH HOH . EA 8 HOH B 23 423 156 HOH HOH . EA 8 HOH B 24 424 131 HOH HOH . EA 8 HOH B 25 425 67 HOH HOH . EA 8 HOH B 26 426 52 HOH HOH . EA 8 HOH B 27 427 96 HOH HOH . EA 8 HOH B 28 428 48 HOH HOH . EA 8 HOH B 29 429 136 HOH HOH . EA 8 HOH B 30 430 145 HOH HOH . EA 8 HOH B 31 431 13 HOH HOH . EA 8 HOH B 32 432 74 HOH HOH . EA 8 HOH B 33 433 71 HOH HOH . EA 8 HOH B 34 434 30 HOH HOH . EA 8 HOH B 35 435 43 HOH HOH . EA 8 HOH B 36 436 58 HOH HOH . EA 8 HOH B 37 437 142 HOH HOH . EA 8 HOH B 38 438 64 HOH HOH . EA 8 HOH B 39 439 37 HOH HOH . EA 8 HOH B 40 440 68 HOH HOH . EA 8 HOH B 41 441 150 HOH HOH . EA 8 HOH B 42 442 181 HOH HOH . EA 8 HOH B 43 443 174 HOH HOH . EA 8 HOH B 44 444 154 HOH HOH . EA 8 HOH B 45 445 182 HOH HOH . EA 8 HOH B 46 446 185 HOH HOH . EA 8 HOH B 47 447 152 HOH HOH . EA 8 HOH B 48 448 196 HOH HOH . EA 8 HOH B 49 449 89 HOH HOH . EA 8 HOH B 50 450 180 HOH HOH . EA 8 HOH B 51 451 83 HOH HOH . EA 8 HOH B 52 452 73 HOH HOH . EA 8 HOH B 53 453 159 HOH HOH . EA 8 HOH B 54 454 195 HOH HOH . EA 8 HOH B 55 455 115 HOH HOH . EA 8 HOH B 56 456 172 HOH HOH . EA 8 HOH B 57 457 186 HOH HOH . EA 8 HOH B 58 458 2 HOH HOH . EA 8 HOH B 59 459 133 HOH HOH . EA 8 HOH B 60 460 144 HOH HOH . EA 8 HOH B 61 461 191 HOH HOH . EA 8 HOH B 62 462 146 HOH HOH . EA 8 HOH B 63 463 143 HOH HOH . EA 8 HOH B 64 464 201 HOH HOH . EA 8 HOH B 65 465 125 HOH HOH . EA 8 HOH B 66 466 98 HOH HOH . EA 8 HOH B 67 467 157 HOH HOH . EA 8 HOH B 68 468 204 HOH HOH . EA 8 HOH B 69 469 57 HOH HOH . EA 8 HOH B 70 470 140 HOH HOH . EA 8 HOH B 71 471 199 HOH HOH . EA 8 HOH B 72 472 1 HOH HOH . EA 8 HOH B 73 473 187 HOH HOH . EA 8 HOH B 74 474 56 HOH HOH . EA 8 HOH B 75 475 69 HOH HOH . EA 8 HOH B 76 476 205 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 29.149 _atom_site.Cartn_y 27.253 _atom_site.Cartn_z 38.112 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.67 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #