data_5O64 # _model_server_result.job_id SGP9rSxHRpxvyl9WaD4aPg _model_server_result.datetime_utc '2024-11-23 22:59:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o64 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":302}' # _entry.id 5O64 # _exptl.entry_id 5O64 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5O64 _cell.length_a 226.6 _cell.length_b 226.6 _cell.length_c 113.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O64 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 L N N ? 9 P N N ? 9 Q N N ? 9 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 1 C CYS 1 1_555 I CG3 DGA . C DGA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.629 ? covale ? covale2 A SG CYS 87 C CYS 87 1_555 E CAB HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.753 ? covale ? covale3 A SG CYS 90 C CYS 90 1_555 E CAC HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? covale ? covale4 A SG CYS 132 C CYS 132 1_555 F CAB HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? covale ? covale5 A SG CYS 135 C CYS 135 1_555 F CAC HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? covale ? covale6 A SG CYS 244 C CYS 244 1_555 G CAB HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? covale ? covale7 A SG CYS 247 C CYS 247 1_555 G CAC HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? covale ? covale8 A SG CYS 305 C CYS 305 1_555 H CAB HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? covale ? covale9 A SG CYS 308 C CYS 308 1_555 H CAC HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? covale ? covale10 B N TYR 1 H TYR 2 1_555 K C FME . H FME 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? metalc ? metalc1 A SD MET 74 C MET 74 1_555 E FE HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc2 A NE2 HIS 91 C HIS 91 1_555 E FE HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc3 A SD MET 110 C MET 110 1_555 F FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc4 A NE2 HIS 124 C HIS 124 1_555 H FE HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc5 A NE2 HIS 136 C HIS 136 1_555 F FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc6 A SD MET 233 C MET 233 1_555 G FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc7 A NE2 HIS 248 C HIS 248 1_555 G FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc8 A NE2 HIS 309 C HIS 309 1_555 H FE HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc9 C NE2 HIS 190 L HIS 190 1_555 X FE FE2 . L FE2 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc10 C NE2 HIS 230 L HIS 230 1_555 X FE FE2 . L FE2 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc11 X FE FE2 . L FE2 306 1_555 D NE2 HIS 217 M HIS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc12 X FE FE2 . L FE2 306 1_555 D OE1 GLU 232 M GLU 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc13 X FE FE2 . L FE2 306 1_555 D OE2 GLU 232 M GLU 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc14 X FE FE2 . L FE2 306 1_555 D NE2 HIS 264 M HIS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 712 n n N1 CM1 LDA sing 713 n n N1 CM2 LDA sing 714 n n N1 C1 LDA sing 715 n n CM1 HM11 LDA sing 716 n n CM1 HM12 LDA sing 717 n n CM1 HM13 LDA sing 718 n n CM2 HM21 LDA sing 719 n n CM2 HM22 LDA sing 720 n n CM2 HM23 LDA sing 721 n n C1 C2 LDA sing 722 n n C1 H11 LDA sing 723 n n C1 H12 LDA sing 724 n n C2 C3 LDA sing 725 n n C2 H21 LDA sing 726 n n C2 H22 LDA sing 727 n n C3 C4 LDA sing 728 n n C3 H31 LDA sing 729 n n C3 H32 LDA sing 730 n n C4 C5 LDA sing 731 n n C4 H41 LDA sing 732 n n C4 H42 LDA sing 733 n n C5 C6 LDA sing 734 n n C5 H51 LDA sing 735 n n C5 H52 LDA sing 736 n n C6 C7 LDA sing 737 n n C6 H61 LDA sing 738 n n C6 H62 LDA sing 739 n n C7 C8 LDA sing 740 n n C7 H71 LDA sing 741 n n C7 H72 LDA sing 742 n n C8 C9 LDA sing 743 n n C8 H81 LDA sing 744 n n C8 H82 LDA sing 745 n n C9 C10 LDA sing 746 n n C9 H91 LDA sing 747 n n C9 H92 LDA sing 748 n n C10 C11 LDA sing 749 n n C10 H101 LDA sing 750 n n C10 H102 LDA sing 751 n n C11 C12 LDA sing 752 n n C11 H111 LDA sing 753 n n C11 H112 LDA sing 754 n n C12 H121 LDA sing 755 n n C12 H122 LDA sing 756 n n C12 H123 LDA sing 757 n n # _atom_sites.entry_id 5O64 _atom_sites.fract_transf_matrix[1][1] 0.004413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEC C 1 401 401 HEC HEC . F 5 HEC C 1 402 402 HEC HEC . G 5 HEC C 1 403 403 HEC HEC . H 5 HEC C 1 404 404 HEC HEC . I 6 DGA C 1 405 1278 DGA DGA . J 7 SO4 C 1 406 7 SO4 SO4 . K 8 FME H 1 301 1 FME FME . L 9 LDA H 1 302 701 LDA LDA . M 7 SO4 H 1 303 1 SO4 SO4 . N 7 SO4 H 1 304 21 SO4 SO4 . O 7 SO4 H 1 305 22 SO4 SO4 . P 9 LDA H 1 306 1 LDA LDA . Q 9 LDA H 1 307 2 LDA LDA . R 10 HTO H 1 308 3 HTO HTO . S 11 BCB L 1 301 400 BCB BCB . T 11 BCB L 1 302 401 BCB BCB . U 12 BPB L 1 303 402 BPB BPB . V 10 HTO L 1 304 1 HTO HTO . W 10 HTO L 1 305 4 HTO HTO . X 13 FE2 L 1 306 500 FE2 FE2 . Y 14 MQ7 M 1 401 501 MQ7 MQ7 . Z 11 BCB M 1 402 400 BCB BCB . AA 11 BCB M 1 403 401 BCB BCB . BA 12 BPB M 1 404 402 BPB BPB . CA 15 NS5 M 1 405 600 NS5 NS5 . DA 7 SO4 M 1 406 3 SO4 SO4 . EA 7 SO4 M 1 407 5 SO4 SO4 . FA 7 SO4 M 1 408 6 SO4 SO4 . GA 7 SO4 M 1 409 9 SO4 SO4 . HA 7 SO4 M 1 410 15 SO4 SO4 . IA 7 SO4 M 1 411 19 SO4 SO4 . JA 9 LDA M 1 412 3 LDA LDA . KA 16 HOH C 1 501 26 HOH HOH . KA 16 HOH C 2 502 10 HOH HOH . KA 16 HOH C 3 503 13 HOH HOH . KA 16 HOH C 4 504 4 HOH HOH . KA 16 HOH C 5 505 3 HOH HOH . KA 16 HOH C 6 506 7 HOH HOH . KA 16 HOH C 7 507 28 HOH HOH . LA 16 HOH H 1 401 24 HOH HOH . LA 16 HOH H 2 402 30 HOH HOH . LA 16 HOH H 3 403 25 HOH HOH . MA 16 HOH L 1 401 15 HOH HOH . MA 16 HOH L 2 402 1 HOH HOH . MA 16 HOH L 3 403 14 HOH HOH . MA 16 HOH L 4 404 2 HOH HOH . MA 16 HOH L 5 405 6 HOH HOH . MA 16 HOH L 6 406 27 HOH HOH . MA 16 HOH L 7 407 5 HOH HOH . MA 16 HOH L 8 408 18 HOH HOH . MA 16 HOH L 9 409 16 HOH HOH . MA 16 HOH L 10 410 29 HOH HOH . MA 16 HOH L 11 411 9 HOH HOH . MA 16 HOH L 12 412 23 HOH HOH . MA 16 HOH L 13 413 17 HOH HOH . NA 16 HOH M 1 501 19 HOH HOH . NA 16 HOH M 2 502 21 HOH HOH . NA 16 HOH M 3 503 20 HOH HOH . NA 16 HOH M 4 504 12 HOH HOH . NA 16 HOH M 5 505 11 HOH HOH . NA 16 HOH M 6 506 22 HOH HOH . NA 16 HOH M 7 507 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . L 9 15.397 -30.343 22.822 1 110.56 ? N1 LDA 302 H 1 HETATM 2 O O1 LDA . . . L 9 16.562 -30.234 22.382 1 102.14 ? O1 LDA 302 H 1 HETATM 3 C CM1 LDA . . . L 9 15.487 -30.735 24.24 1 116.19 ? CM1 LDA 302 H 1 HETATM 4 C CM2 LDA . . . L 9 14.694 -29.04 22.716 1 112.71 ? CM2 LDA 302 H 1 HETATM 5 C C1 LDA . . . L 9 14.632 -31.344 22.027 1 105.16 ? C1 LDA 302 H 1 HETATM 6 C C2 LDA . . . L 9 15.009 -32.813 22.241 1 99.72 ? C2 LDA 302 H 1 HETATM 7 C C3 LDA . . . L 9 14.469 -33.683 21.107 1 100.14 ? C3 LDA 302 H 1 HETATM 8 C C4 LDA . . . L 9 14.341 -35.14 21.547 1 106.84 ? C4 LDA 302 H 1 HETATM 9 C C5 LDA . . . L 9 13.882 -36.021 20.389 1 112.56 ? C5 LDA 302 H 1 HETATM 10 C C6 LDA . . . L 9 13.192 -37.302 20.843 1 108.3 ? C6 LDA 302 H 1 HETATM 11 C C7 LDA . . . L 9 14.17 -38.465 20.796 1 113.27 ? C7 LDA 302 H 1 HETATM 12 C C8 LDA . . . L 9 13.68 -39.656 21.626 1 122.71 ? C8 LDA 302 H 1 HETATM 13 C C9 LDA . . . L 9 13.351 -40.91 20.802 1 120.75 ? C9 LDA 302 H 1 HETATM 14 C C10 LDA . . . L 9 13.304 -42.161 21.696 1 117.31 ? C10 LDA 302 H 1 HETATM 15 C C11 LDA . . . L 9 12.466 -43.314 21.122 1 117.56 ? C11 LDA 302 H 1 HETATM 16 C C12 LDA . . . L 9 11.255 -43.695 21.966 1 108.67 ? C12 LDA 302 H 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #