data_5O64 # _model_server_result.job_id f80g8XTTmEIsAw1GJIRvkw _model_server_result.datetime_utc '2024-11-23 22:32:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o64 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":304}' # _entry.id 5O64 # _exptl.entry_id 5O64 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 148.2 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEPTANE-1,2,3-TRIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5O64 _cell.length_a 226.6 _cell.length_b 226.6 _cell.length_c 113.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O64 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 R N N ? 10 V N N ? 10 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 1 C CYS 1 1_555 I CG3 DGA . C DGA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.629 ? covale ? covale2 A SG CYS 87 C CYS 87 1_555 E CAB HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.753 ? covale ? covale3 A SG CYS 90 C CYS 90 1_555 E CAC HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? covale ? covale4 A SG CYS 132 C CYS 132 1_555 F CAB HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? covale ? covale5 A SG CYS 135 C CYS 135 1_555 F CAC HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? covale ? covale6 A SG CYS 244 C CYS 244 1_555 G CAB HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? covale ? covale7 A SG CYS 247 C CYS 247 1_555 G CAC HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? covale ? covale8 A SG CYS 305 C CYS 305 1_555 H CAB HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? covale ? covale9 A SG CYS 308 C CYS 308 1_555 H CAC HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? covale ? covale10 B N TYR 1 H TYR 2 1_555 K C FME . H FME 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? metalc ? metalc1 A SD MET 74 C MET 74 1_555 E FE HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc2 A NE2 HIS 91 C HIS 91 1_555 E FE HEC . C HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc3 A SD MET 110 C MET 110 1_555 F FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc4 A NE2 HIS 124 C HIS 124 1_555 H FE HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc5 A NE2 HIS 136 C HIS 136 1_555 F FE HEC . C HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc6 A SD MET 233 C MET 233 1_555 G FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc7 A NE2 HIS 248 C HIS 248 1_555 G FE HEC . C HEC 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc8 A NE2 HIS 309 C HIS 309 1_555 H FE HEC . C HEC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc9 C NE2 HIS 190 L HIS 190 1_555 X FE FE2 . L FE2 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc10 C NE2 HIS 230 L HIS 230 1_555 X FE FE2 . L FE2 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc11 X FE FE2 . L FE2 306 1_555 D NE2 HIS 217 M HIS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc12 X FE FE2 . L FE2 306 1_555 D OE1 GLU 232 M GLU 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc13 X FE FE2 . L FE2 306 1_555 D OE2 GLU 232 M GLU 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc14 X FE FE2 . L FE2 306 1_555 D NE2 HIS 264 M HIS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? # _chem_comp.formula 'C7 H16 O3' _chem_comp.formula_weight 148.2 _chem_comp.id HTO _chem_comp.mon_nstd_flag . _chem_comp.name HEPTANE-1,2,3-TRIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HTO sing 666 n n C1 C2 HTO sing 667 n n C1 H11 HTO sing 668 n n C1 H12 HTO sing 669 n n O1 HO1 HTO sing 670 n n C2 O2 HTO sing 671 n n C2 C3 HTO sing 672 n n C2 H2 HTO sing 673 n n O2 HO2 HTO sing 674 n n C3 O3 HTO sing 675 n n C3 C4 HTO sing 676 n n C3 H3 HTO sing 677 n n O3 HO3 HTO sing 678 n n C4 C5 HTO sing 679 n n C4 H41 HTO sing 680 n n C4 H42 HTO sing 681 n n C5 C6 HTO sing 682 n n C5 H51 HTO sing 683 n n C5 H52 HTO sing 684 n n C6 C7 HTO sing 685 n n C6 H61 HTO sing 686 n n C6 H62 HTO sing 687 n n C7 H71 HTO sing 688 n n C7 H72 HTO sing 689 n n C7 H73 HTO sing 690 n n # _atom_sites.entry_id 5O64 _atom_sites.fract_transf_matrix[1][1] 0.004413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEC C 1 401 401 HEC HEC . F 5 HEC C 1 402 402 HEC HEC . G 5 HEC C 1 403 403 HEC HEC . H 5 HEC C 1 404 404 HEC HEC . I 6 DGA C 1 405 1278 DGA DGA . J 7 SO4 C 1 406 7 SO4 SO4 . K 8 FME H 1 301 1 FME FME . L 9 LDA H 1 302 701 LDA LDA . M 7 SO4 H 1 303 1 SO4 SO4 . N 7 SO4 H 1 304 21 SO4 SO4 . O 7 SO4 H 1 305 22 SO4 SO4 . P 9 LDA H 1 306 1 LDA LDA . Q 9 LDA H 1 307 2 LDA LDA . R 10 HTO H 1 308 3 HTO HTO . S 11 BCB L 1 301 400 BCB BCB . T 11 BCB L 1 302 401 BCB BCB . U 12 BPB L 1 303 402 BPB BPB . V 10 HTO L 1 304 1 HTO HTO . W 10 HTO L 1 305 4 HTO HTO . X 13 FE2 L 1 306 500 FE2 FE2 . Y 14 MQ7 M 1 401 501 MQ7 MQ7 . Z 11 BCB M 1 402 400 BCB BCB . AA 11 BCB M 1 403 401 BCB BCB . BA 12 BPB M 1 404 402 BPB BPB . CA 15 NS5 M 1 405 600 NS5 NS5 . DA 7 SO4 M 1 406 3 SO4 SO4 . EA 7 SO4 M 1 407 5 SO4 SO4 . FA 7 SO4 M 1 408 6 SO4 SO4 . GA 7 SO4 M 1 409 9 SO4 SO4 . HA 7 SO4 M 1 410 15 SO4 SO4 . IA 7 SO4 M 1 411 19 SO4 SO4 . JA 9 LDA M 1 412 3 LDA LDA . KA 16 HOH C 1 501 26 HOH HOH . KA 16 HOH C 2 502 10 HOH HOH . KA 16 HOH C 3 503 13 HOH HOH . KA 16 HOH C 4 504 4 HOH HOH . KA 16 HOH C 5 505 3 HOH HOH . KA 16 HOH C 6 506 7 HOH HOH . KA 16 HOH C 7 507 28 HOH HOH . LA 16 HOH H 1 401 24 HOH HOH . LA 16 HOH H 2 402 30 HOH HOH . LA 16 HOH H 3 403 25 HOH HOH . MA 16 HOH L 1 401 15 HOH HOH . MA 16 HOH L 2 402 1 HOH HOH . MA 16 HOH L 3 403 14 HOH HOH . MA 16 HOH L 4 404 2 HOH HOH . MA 16 HOH L 5 405 6 HOH HOH . MA 16 HOH L 6 406 27 HOH HOH . MA 16 HOH L 7 407 5 HOH HOH . MA 16 HOH L 8 408 18 HOH HOH . MA 16 HOH L 9 409 16 HOH HOH . MA 16 HOH L 10 410 29 HOH HOH . MA 16 HOH L 11 411 9 HOH HOH . MA 16 HOH L 12 412 23 HOH HOH . MA 16 HOH L 13 413 17 HOH HOH . NA 16 HOH M 1 501 19 HOH HOH . NA 16 HOH M 2 502 21 HOH HOH . NA 16 HOH M 3 503 20 HOH HOH . NA 16 HOH M 4 504 12 HOH HOH . NA 16 HOH M 5 505 11 HOH HOH . NA 16 HOH M 6 506 22 HOH HOH . NA 16 HOH M 7 507 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HTO . . . V 10 -16.341 -37.834 16.812 1 118.31 ? C1 HTO 304 L 1 HETATM 2 O O1 HTO . . . V 10 -15.229 -38.745 16.653 1 100.16 ? O1 HTO 304 L 1 HETATM 3 C C2 HTO . . . V 10 -17.688 -38.575 16.998 1 141.89 ? C2 HTO 304 L 1 HETATM 4 O O2 HTO . . . V 10 -17.365 -39.709 17.828 1 162.23 ? O2 HTO 304 L 1 HETATM 5 C C3 HTO . . . V 10 -18.919 -37.747 17.546 1 143.12 ? C3 HTO 304 L 1 HETATM 6 O O3 HTO . . . V 10 -18.864 -37.67 18.979 1 165.46 ? O3 HTO 304 L 1 HETATM 7 C C4 HTO . . . V 10 -20.357 -38.238 17.184 1 135.27 ? C4 HTO 304 L 1 HETATM 8 C C5 HTO . . . V 10 -21.505 -37.21 17.352 1 122.58 ? C5 HTO 304 L 1 HETATM 9 C C6 HTO . . . V 10 -22.937 -37.748 17.079 1 131.29 ? C6 HTO 304 L 1 HETATM 10 C C7 HTO . . . V 10 -23.389 -37.906 15.614 1 121.89 ? C7 HTO 304 L 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 429 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 10 #