data_5O6O # _model_server_result.job_id k9lQAxBaU1ux4qlmKW_jKw _model_server_result.datetime_utc '2024-11-15 00:44:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o6o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5O6O # _exptl.entry_id 5O6O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5O6O _cell.length_a 91.371 _cell.length_b 91.371 _cell.length_c 133.29 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O6O _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -91.371 0 3 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 6_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -91.371 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 257 A CYS 255 1_555 A SG CYS 257 A CYS 255 6_545 ? A ? ? A ? ? ? ? ? ? ? 2.374 ? metalc ? metalc1 A O GLU 52 A GLU 50 1_555 C NA NA . A NA 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc2 A O GLU 52 A GLU 50 1_555 C NA NA . A NA 302 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc3 A O LEU 55 A LEU 53 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc4 A O ALA 58 A ALA 56 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc5 C NA NA . A NA 302 1_555 F O HOH . A HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc6 C NA NA . A NA 302 1_555 F O HOH . A HOH 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc7 C NA NA . A NA 302 1_555 F O HOH . A HOH 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BGC _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 BGC sing 106 n n C2 C1 BGC sing 107 n n C2 O2 BGC sing 108 n n C2 H2 BGC sing 109 n n C3 C4 BGC sing 110 n n C3 O3 BGC sing 111 n n C3 H3 BGC sing 112 n n C4 C5 BGC sing 113 n n C4 O4 BGC sing 114 n n C4 H4 BGC sing 115 n n C5 C6 BGC sing 116 n n C5 O5 BGC sing 117 n n C5 H5 BGC sing 118 n n C6 O6 BGC sing 119 n n C6 H61 BGC sing 120 n n C6 H62 BGC sing 121 n n C1 O1 BGC sing 122 n n C1 O5 BGC sing 123 n n C1 H1 BGC sing 124 n n O1 HO1 BGC sing 125 n n O2 HO2 BGC sing 126 n n O3 HO3 BGC sing 127 n n O4 HO4 BGC sing 128 n n O6 HO6 BGC sing 129 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BGC DGlcpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BGC b-D-glucopyranose 'COMMON NAME' GMML 1 BGC b-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BGC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5O6O _atom_sites.fract_transf_matrix[1][1] 0.010944 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010944 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007502 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 301 NAD NAD . C 3 NA A 1 302 302 NA NA . D 4 BGC A 1 303 1 BGC XXX . E 5 9MB A 1 304 1 9MB 176 . F 6 HOH A 1 401 126 HOH HOH . F 6 HOH A 2 402 200 HOH HOH . F 6 HOH A 3 403 13 HOH HOH . F 6 HOH A 4 404 44 HOH HOH . F 6 HOH A 5 405 183 HOH HOH . F 6 HOH A 6 406 58 HOH HOH . F 6 HOH A 7 407 185 HOH HOH . F 6 HOH A 8 408 29 HOH HOH . F 6 HOH A 9 409 1 HOH HOH . F 6 HOH A 10 410 127 HOH HOH . F 6 HOH A 11 411 186 HOH HOH . F 6 HOH A 12 412 11 HOH HOH . F 6 HOH A 13 413 75 HOH HOH . F 6 HOH A 14 414 74 HOH HOH . F 6 HOH A 15 415 115 HOH HOH . F 6 HOH A 16 416 145 HOH HOH . F 6 HOH A 17 417 93 HOH HOH . F 6 HOH A 18 418 222 HOH HOH . F 6 HOH A 19 419 97 HOH HOH . F 6 HOH A 20 420 122 HOH HOH . F 6 HOH A 21 421 4 HOH HOH . F 6 HOH A 22 422 7 HOH HOH . F 6 HOH A 23 423 206 HOH HOH . F 6 HOH A 24 424 89 HOH HOH . F 6 HOH A 25 425 17 HOH HOH . F 6 HOH A 26 426 117 HOH HOH . F 6 HOH A 27 427 100 HOH HOH . F 6 HOH A 28 428 286 HOH HOH . F 6 HOH A 29 429 132 HOH HOH . F 6 HOH A 30 430 81 HOH HOH . F 6 HOH A 31 431 105 HOH HOH . F 6 HOH A 32 432 234 HOH HOH . F 6 HOH A 33 433 138 HOH HOH . F 6 HOH A 34 434 39 HOH HOH . F 6 HOH A 35 435 240 HOH HOH . F 6 HOH A 36 436 21 HOH HOH . F 6 HOH A 37 437 49 HOH HOH . F 6 HOH A 38 438 86 HOH HOH . F 6 HOH A 39 439 83 HOH HOH . F 6 HOH A 40 440 38 HOH HOH . F 6 HOH A 41 441 40 HOH HOH . F 6 HOH A 42 442 80 HOH HOH . F 6 HOH A 43 443 41 HOH HOH . F 6 HOH A 44 444 128 HOH HOH . F 6 HOH A 45 445 10 HOH HOH . F 6 HOH A 46 446 33 HOH HOH . F 6 HOH A 47 447 192 HOH HOH . F 6 HOH A 48 448 8 HOH HOH . F 6 HOH A 49 449 236 HOH HOH . F 6 HOH A 50 450 20 HOH HOH . F 6 HOH A 51 451 6 HOH HOH . F 6 HOH A 52 452 46 HOH HOH . F 6 HOH A 53 453 152 HOH HOH . F 6 HOH A 54 454 5 HOH HOH . F 6 HOH A 55 455 14 HOH HOH . F 6 HOH A 56 456 279 HOH HOH . F 6 HOH A 57 457 135 HOH HOH . F 6 HOH A 58 458 64 HOH HOH . F 6 HOH A 59 459 35 HOH HOH . F 6 HOH A 60 460 31 HOH HOH . F 6 HOH A 61 461 22 HOH HOH . F 6 HOH A 62 462 25 HOH HOH . F 6 HOH A 63 463 34 HOH HOH . F 6 HOH A 64 464 282 HOH HOH . F 6 HOH A 65 465 95 HOH HOH . F 6 HOH A 66 466 125 HOH HOH . F 6 HOH A 67 467 28 HOH HOH . F 6 HOH A 68 468 26 HOH HOH . F 6 HOH A 69 469 230 HOH HOH . F 6 HOH A 70 470 91 HOH HOH . F 6 HOH A 71 471 88 HOH HOH . F 6 HOH A 72 472 69 HOH HOH . F 6 HOH A 73 473 57 HOH HOH . F 6 HOH A 74 474 108 HOH HOH . F 6 HOH A 75 475 285 HOH HOH . F 6 HOH A 76 476 9 HOH HOH . F 6 HOH A 77 477 129 HOH HOH . F 6 HOH A 78 478 24 HOH HOH . F 6 HOH A 79 479 246 HOH HOH . F 6 HOH A 80 480 184 HOH HOH . F 6 HOH A 81 481 171 HOH HOH . F 6 HOH A 82 482 209 HOH HOH . F 6 HOH A 83 483 134 HOH HOH . F 6 HOH A 84 484 15 HOH HOH . F 6 HOH A 85 485 87 HOH HOH . F 6 HOH A 86 486 50 HOH HOH . F 6 HOH A 87 487 155 HOH HOH . F 6 HOH A 88 488 182 HOH HOH . F 6 HOH A 89 489 47 HOH HOH . F 6 HOH A 90 490 107 HOH HOH . F 6 HOH A 91 491 48 HOH HOH . F 6 HOH A 92 492 215 HOH HOH . F 6 HOH A 93 493 123 HOH HOH . F 6 HOH A 94 494 199 HOH HOH . F 6 HOH A 95 495 45 HOH HOH . F 6 HOH A 96 496 102 HOH HOH . F 6 HOH A 97 497 82 HOH HOH . F 6 HOH A 98 498 179 HOH HOH . F 6 HOH A 99 499 231 HOH HOH . F 6 HOH A 100 500 114 HOH HOH . F 6 HOH A 101 501 94 HOH HOH . F 6 HOH A 102 502 52 HOH HOH . F 6 HOH A 103 503 243 HOH HOH . F 6 HOH A 104 504 98 HOH HOH . F 6 HOH A 105 505 12 HOH HOH . F 6 HOH A 106 506 53 HOH HOH . F 6 HOH A 107 507 61 HOH HOH . F 6 HOH A 108 508 291 HOH HOH . F 6 HOH A 109 509 63 HOH HOH . F 6 HOH A 110 510 121 HOH HOH . F 6 HOH A 111 511 133 HOH HOH . F 6 HOH A 112 512 23 HOH HOH . F 6 HOH A 113 513 55 HOH HOH . F 6 HOH A 114 514 136 HOH HOH . F 6 HOH A 115 515 283 HOH HOH . F 6 HOH A 116 516 224 HOH HOH . F 6 HOH A 117 517 116 HOH HOH . F 6 HOH A 118 518 101 HOH HOH . F 6 HOH A 119 519 164 HOH HOH . F 6 HOH A 120 520 79 HOH HOH . F 6 HOH A 121 521 131 HOH HOH . F 6 HOH A 122 522 149 HOH HOH . F 6 HOH A 123 523 19 HOH HOH . F 6 HOH A 124 524 56 HOH HOH . F 6 HOH A 125 525 3 HOH HOH . F 6 HOH A 126 526 120 HOH HOH . F 6 HOH A 127 527 96 HOH HOH . F 6 HOH A 128 528 27 HOH HOH . F 6 HOH A 129 529 77 HOH HOH . F 6 HOH A 130 530 130 HOH HOH . F 6 HOH A 131 531 43 HOH HOH . F 6 HOH A 132 532 106 HOH HOH . F 6 HOH A 133 533 54 HOH HOH . F 6 HOH A 134 534 280 HOH HOH . F 6 HOH A 135 535 198 HOH HOH . F 6 HOH A 136 536 191 HOH HOH . F 6 HOH A 137 537 176 HOH HOH . F 6 HOH A 138 538 59 HOH HOH . F 6 HOH A 139 539 118 HOH HOH . F 6 HOH A 140 540 113 HOH HOH . F 6 HOH A 141 541 221 HOH HOH . F 6 HOH A 142 542 103 HOH HOH . F 6 HOH A 143 543 62 HOH HOH . F 6 HOH A 144 544 85 HOH HOH . F 6 HOH A 145 545 104 HOH HOH . F 6 HOH A 146 546 78 HOH HOH . F 6 HOH A 147 547 51 HOH HOH . F 6 HOH A 148 548 166 HOH HOH . F 6 HOH A 149 549 180 HOH HOH . F 6 HOH A 150 550 178 HOH HOH . F 6 HOH A 151 551 90 HOH HOH . F 6 HOH A 152 552 143 HOH HOH . F 6 HOH A 153 553 229 HOH HOH . F 6 HOH A 154 554 148 HOH HOH . F 6 HOH A 155 555 210 HOH HOH . F 6 HOH A 156 556 67 HOH HOH . F 6 HOH A 157 557 112 HOH HOH . F 6 HOH A 158 558 177 HOH HOH . F 6 HOH A 159 559 137 HOH HOH . F 6 HOH A 160 560 84 HOH HOH . F 6 HOH A 161 561 16 HOH HOH . F 6 HOH A 162 562 249 HOH HOH . F 6 HOH A 163 563 142 HOH HOH . F 6 HOH A 164 564 18 HOH HOH . F 6 HOH A 165 565 154 HOH HOH . F 6 HOH A 166 566 76 HOH HOH . F 6 HOH A 167 567 281 HOH HOH . F 6 HOH A 168 568 170 HOH HOH . F 6 HOH A 169 569 306 HOH HOH . F 6 HOH A 170 570 70 HOH HOH . F 6 HOH A 171 571 201 HOH HOH . F 6 HOH A 172 572 71 HOH HOH . F 6 HOH A 173 573 32 HOH HOH . F 6 HOH A 174 574 73 HOH HOH . F 6 HOH A 175 575 72 HOH HOH . F 6 HOH A 176 576 218 HOH HOH . F 6 HOH A 177 577 216 HOH HOH . F 6 HOH A 178 578 111 HOH HOH . F 6 HOH A 179 579 42 HOH HOH . F 6 HOH A 180 580 219 HOH HOH . F 6 HOH A 181 581 158 HOH HOH . F 6 HOH A 182 582 226 HOH HOH . F 6 HOH A 183 583 160 HOH HOH . F 6 HOH A 184 584 139 HOH HOH . F 6 HOH A 185 585 196 HOH HOH . F 6 HOH A 186 586 30 HOH HOH . F 6 HOH A 187 587 261 HOH HOH . F 6 HOH A 188 588 36 HOH HOH . F 6 HOH A 189 589 2 HOH HOH . F 6 HOH A 190 590 167 HOH HOH . F 6 HOH A 191 591 245 HOH HOH . F 6 HOH A 192 592 65 HOH HOH . F 6 HOH A 193 593 277 HOH HOH . F 6 HOH A 194 594 66 HOH HOH . F 6 HOH A 195 595 60 HOH HOH . F 6 HOH A 196 596 187 HOH HOH . F 6 HOH A 197 597 169 HOH HOH . F 6 HOH A 198 598 37 HOH HOH . F 6 HOH A 199 599 188 HOH HOH . F 6 HOH A 200 600 147 HOH HOH . F 6 HOH A 201 601 161 HOH HOH . F 6 HOH A 202 602 144 HOH HOH . F 6 HOH A 203 603 109 HOH HOH . F 6 HOH A 204 604 141 HOH HOH . F 6 HOH A 205 605 110 HOH HOH . F 6 HOH A 206 606 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 BGC . . . D 4 -17.076 -23.076 -13.244 0.72 23.13 ? C2 BGC 303 A 1 HETATM 2 C C3 BGC . . . D 4 -18.423 -22.967 -12.543 0.72 24.14 ? C3 BGC 303 A 1 HETATM 3 C C4 BGC . . . D 4 -19.419 -23.959 -13.129 0.72 23.79 ? C4 BGC 303 A 1 HETATM 4 C C5 BGC . . . D 4 -18.808 -25.357 -13.141 0.72 22.11 ? C5 BGC 303 A 1 HETATM 5 C C6 BGC . . . D 4 -19.682 -26.397 -13.791 0.72 16.72 ? C6 BGC 303 A 1 HETATM 6 C C1 BGC . . . D 4 -16.599 -24.525 -13.262 0.72 18.2 ? C1 BGC 303 A 1 HETATM 7 O O1 BGC . . . D 4 -15.387 -24.601 -13.964 0.72 16.87 ? O1 BGC 303 A 1 HETATM 8 O O2 BGC . . . D 4 -16.111 -22.268 -12.579 0.72 22.75 ? O2 BGC 303 A 1 HETATM 9 O O3 BGC . . . D 4 -18.924 -21.641 -12.675 0.72 24.08 ? O3 BGC 303 A 1 HETATM 10 O O4 BGC . . . D 4 -20.601 -23.97 -12.338 0.72 25.87 ? O4 BGC 303 A 1 HETATM 11 O O5 BGC . . . D 4 -17.586 -25.325 -13.889 0.72 19.25 ? O5 BGC 303 A 1 HETATM 12 O O6 BGC . . . D 4 -19.874 -26.102 -15.163 0.72 24.91 ? O6 BGC 303 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #