data_5O6P
#
_model_server_result.job_id            X0M64F3i0hnGiI8nHXzhKw 
_model_server_result.datetime_utc      '2024-12-02 07:40:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5o6p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    5O6P 
#
_exptl.entry_id    5O6P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              340.116 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            1,6-di-O-phosphono-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5O6P 
_cell.length_a            31.75 
_cell.length_b            68.3 
_cell.length_c            83.23 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5O6P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 8 A ASP 8 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc2 A O ASN 10 A ASN 10 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc3 A OD1 ASP 170 A ASP 170 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? 
metalc ? metalc4 B O1X B16 . A B16 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? 
metalc ? metalc5 C MG MG . A MG 302 1_555 D O HOH . A HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc6 C MG MG . A MG 302 1_555 D O HOH . A HOH 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
#
_chem_comp.formula           'C6 H14 O12 P2' 
_chem_comp.formula_weight    340.116 
_chem_comp.id                B16 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1,6-di-O-phosphono-beta-D-glucopyranose 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     1,6-di-O-phosphono-beta-D-glucose;1,6-di-O-phosphono-D-glucose;1,6-di-O-phosphono-glucose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O6 B16 sing 70 n n 
P O1P B16 sing 71 n n 
P O2P B16 sing 72 n n 
P O3P B16 doub 73 n n 
P' O1 B16 sing 74 n n 
P' O1X B16 sing 75 n n 
P' O2X B16 doub 76 n n 
P' O3X B16 sing 77 n n 
C1 O1 B16 sing 78 n n 
C1 C2 B16 sing 79 n n 
C1 O5 B16 sing 80 n n 
C2 O2 B16 sing 81 n n 
C2 C3 B16 sing 82 n n 
C3 O3 B16 sing 83 n n 
C3 C4 B16 sing 84 n n 
C4 O4 B16 sing 85 n n 
C4 C5 B16 sing 86 n n 
C5 O5 B16 sing 87 n n 
C5 C6 B16 sing 88 n n 
C6 O6 B16 sing 89 n n 
C1 H1 B16 sing 90 n n 
C2 H2 B16 sing 91 n n 
O2 HO2 B16 sing 92 n n 
C3 H3 B16 sing 93 n n 
O3 HO3 B16 sing 94 n n 
C4 H4 B16 sing 95 n n 
O4 HO4 B16 sing 96 n n 
C5 H5 B16 sing 97 n n 
C6 H61 B16 sing 98 n n 
C6 H62 B16 sing 99 n n 
O1P HO1P B16 sing 100 n n 
O2P HO2P B16 sing 101 n n 
O1X HO1X B16 sing 102 n n 
O3X HO3X B16 sing 103 n n 
#
_pdbx_chem_comp_identifier.comp_id            B16 
_pdbx_chem_comp_identifier.identifier         b-D-Glcp1PO36PO3 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     5O6P 
_atom_sites.fract_transf_matrix[1][1]    0.031496 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014641 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012015 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 B16 A 1 301 1 B16 DRG . 
C 3 MG A 1 302 1 MG MG . 
D 4 HOH A 1 401 67 HOH HOH . 
D 4 HOH A 2 402 58 HOH HOH . 
D 4 HOH A 3 403 50 HOH HOH . 
D 4 HOH A 4 404 59 HOH HOH . 
D 4 HOH A 5 405 42 HOH HOH . 
D 4 HOH A 6 406 25 HOH HOH . 
D 4 HOH A 7 407 8 HOH HOH . 
D 4 HOH A 8 408 23 HOH HOH . 
D 4 HOH A 9 409 60 HOH HOH . 
D 4 HOH A 10 410 10 HOH HOH . 
D 4 HOH A 11 411 76 HOH HOH . 
D 4 HOH A 12 412 13 HOH HOH . 
D 4 HOH A 13 413 29 HOH HOH . 
D 4 HOH A 14 414 31 HOH HOH . 
D 4 HOH A 15 415 30 HOH HOH . 
D 4 HOH A 16 416 36 HOH HOH . 
D 4 HOH A 17 417 27 HOH HOH . 
D 4 HOH A 18 418 28 HOH HOH . 
D 4 HOH A 19 419 73 HOH HOH . 
D 4 HOH A 20 420 7 HOH HOH . 
D 4 HOH A 21 421 71 HOH HOH . 
D 4 HOH A 22 422 38 HOH HOH . 
D 4 HOH A 23 423 11 HOH HOH . 
D 4 HOH A 24 424 39 HOH HOH . 
D 4 HOH A 25 425 51 HOH HOH . 
D 4 HOH A 26 426 56 HOH HOH . 
D 4 HOH A 27 427 43 HOH HOH . 
D 4 HOH A 28 428 32 HOH HOH . 
D 4 HOH A 29 429 6 HOH HOH . 
D 4 HOH A 30 430 57 HOH HOH . 
D 4 HOH A 31 431 75 HOH HOH . 
D 4 HOH A 32 432 74 HOH HOH . 
D 4 HOH A 33 433 78 HOH HOH . 
D 4 HOH A 34 434 24 HOH HOH . 
D 4 HOH A 35 435 15 HOH HOH . 
D 4 HOH A 36 436 1 HOH HOH . 
D 4 HOH A 37 437 40 HOH HOH . 
D 4 HOH A 38 438 41 HOH HOH . 
D 4 HOH A 39 439 37 HOH HOH . 
D 4 HOH A 40 440 62 HOH HOH . 
D 4 HOH A 41 441 64 HOH HOH . 
D 4 HOH A 42 442 34 HOH HOH . 
D 4 HOH A 43 443 45 HOH HOH . 
D 4 HOH A 44 444 70 HOH HOH . 
D 4 HOH A 45 445 14 HOH HOH . 
D 4 HOH A 46 446 52 HOH HOH . 
D 4 HOH A 47 447 33 HOH HOH . 
D 4 HOH A 48 448 49 HOH HOH . 
D 4 HOH A 49 449 3 HOH HOH . 
D 4 HOH A 50 450 4 HOH HOH . 
D 4 HOH A 51 451 17 HOH HOH . 
D 4 HOH A 52 452 35 HOH HOH . 
D 4 HOH A 53 453 65 HOH HOH . 
D 4 HOH A 54 454 48 HOH HOH . 
D 4 HOH A 55 455 66 HOH HOH . 
D 4 HOH A 56 456 22 HOH HOH . 
D 4 HOH A 57 457 20 HOH HOH . 
D 4 HOH A 58 458 53 HOH HOH . 
D 4 HOH A 59 459 16 HOH HOH . 
D 4 HOH A 60 460 26 HOH HOH . 
D 4 HOH A 61 461 21 HOH HOH . 
D 4 HOH A 62 462 72 HOH HOH . 
D 4 HOH A 63 463 19 HOH HOH . 
D 4 HOH A 64 464 61 HOH HOH . 
D 4 HOH A 65 465 68 HOH HOH . 
D 4 HOH A 66 466 5 HOH HOH . 
D 4 HOH A 67 467 77 HOH HOH . 
D 4 HOH A 68 468 47 HOH HOH . 
D 4 HOH A 69 469 55 HOH HOH . 
D 4 HOH A 70 470 54 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P B16 . . . B 2 -14.437 -6.587 3.188 1 30.31 ? P B16 301 A 1 
HETATM 2 P P' B16 . . . B 2 -13.523 -7.477 11.011 1 25.29 ? P' B16 301 A 1 
HETATM 3 C C1 B16 . . . B 2 -13.335 -5.928 8.877 1 26.36 ? C1 B16 301 A 1 
HETATM 4 O O1 B16 . . . B 2 -13.074 -7.189 9.466 1 28.66 ? O1 B16 301 A 1 
HETATM 5 C C2 B16 . . . B 2 -12.011 -5.196 8.827 1 26.83 ? C2 B16 301 A 1 
HETATM 6 O O2 B16 . . . B 2 -11.672 -4.874 10.156 1 23.94 ? O2 B16 301 A 1 
HETATM 7 C C3 B16 . . . B 2 -12.118 -3.886 7.983 1 27.36 ? C3 B16 301 A 1 
HETATM 8 O O3 B16 . . . B 2 -10.844 -3.198 7.966 1 28.34 ? O3 B16 301 A 1 
HETATM 9 C C4 B16 . . . B 2 -12.667 -4.167 6.572 1 26.55 ? C4 B16 301 A 1 
HETATM 10 O O4 B16 . . . B 2 -12.924 -2.918 5.887 1 28.92 ? O4 B16 301 A 1 
HETATM 11 C C5 B16 . . . B 2 -13.984 -4.916 6.732 1 27.82 ? C5 B16 301 A 1 
HETATM 12 O O5 B16 . . . B 2 -13.832 -6.147 7.569 1 28.66 ? O5 B16 301 A 1 
HETATM 13 C C6 B16 . . . B 2 -14.746 -5.188 5.407 1 29.18 ? C6 B16 301 A 1 
HETATM 14 O O6 B16 . . . B 2 -14.336 -6.386 4.794 1 28.7 ? O6 B16 301 A 1 
HETATM 15 O O1P B16 . . . B 2 -13.584 -7.935 3.069 1 28.16 ? O1P B16 301 A 1 
HETATM 16 O O2P B16 . . . B 2 -15.858 -7.11 2.858 1 26.16 ? O2P B16 301 A 1 
HETATM 17 O O3P B16 . . . B 2 -13.927 -5.434 2.384 1 25.89 ? O3P B16 301 A 1 
HETATM 18 O O1X B16 . . . B 2 -12.414 -6.799 11.933 1 22.13 ? O1X B16 301 A 1 
HETATM 19 O O2X B16 . . . B 2 -13.482 -8.964 11.251 1 31.23 ? O2X B16 301 A 1 
HETATM 20 O O3X B16 . . . B 2 -14.995 -6.889 11.302 1 22.72 ? O3X B16 301 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           450 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           20 
#