data_5O6X
#
_model_server_result.job_id            1Z5wnbaPsG6Fet_rilbHGw 
_model_server_result.datetime_utc      '2024-11-15 00:22:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5o6x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    5O6X 
#
_exptl.entry_id    5O6X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5O6X 
_cell.length_a            91.132 
_cell.length_b            91.132 
_cell.length_c            133.345 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5O6X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 91.132 0 
3 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 6_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 91.132 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLU 52 A GLU 50 1_555 C NA NA . A NA 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc2 A O GLU 52 A GLU 50 1_555 C NA NA . A NA 302 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc3 A O LEU 55 A LEU 53 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc4 A O ALA 58 A ALA 56 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc5 C NA NA . A NA 302 1_555 F O HOH . A HOH 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc6 C NA NA . A NA 302 1_555 F O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? 
metalc ? metalc7 C NA NA . A NA 302 1_555 F O HOH . A HOH 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5O6X 
_atom_sites.fract_transf_matrix[1][1]    0.010973 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010973 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007499 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAD A 1 301 1 NAD NAD . 
C 3 NA A 1 302 1 NA NA . 
D 4 BGC A 1 303 1 BGC XXX . 
E 5 9MK A 1 304 1 9MK EK7 . 
F 6 HOH A 1 401 197 HOH HOH . 
F 6 HOH A 2 402 168 HOH HOH . 
F 6 HOH A 3 403 56 HOH HOH . 
F 6 HOH A 4 404 38 HOH HOH . 
F 6 HOH A 5 405 395 HOH HOH . 
F 6 HOH A 6 406 244 HOH HOH . 
F 6 HOH A 7 407 199 HOH HOH . 
F 6 HOH A 8 408 327 HOH HOH . 
F 6 HOH A 9 409 349 HOH HOH . 
F 6 HOH A 10 410 49 HOH HOH . 
F 6 HOH A 11 411 385 HOH HOH . 
F 6 HOH A 12 412 20 HOH HOH . 
F 6 HOH A 13 413 403 HOH HOH . 
F 6 HOH A 14 414 162 HOH HOH . 
F 6 HOH A 15 415 129 HOH HOH . 
F 6 HOH A 16 416 208 HOH HOH . 
F 6 HOH A 17 417 9 HOH HOH . 
F 6 HOH A 18 418 238 HOH HOH . 
F 6 HOH A 19 419 352 HOH HOH . 
F 6 HOH A 20 420 295 HOH HOH . 
F 6 HOH A 21 421 406 HOH HOH . 
F 6 HOH A 22 422 16 HOH HOH . 
F 6 HOH A 23 423 8 HOH HOH . 
F 6 HOH A 24 424 312 HOH HOH . 
F 6 HOH A 25 425 61 HOH HOH . 
F 6 HOH A 26 426 105 HOH HOH . 
F 6 HOH A 27 427 47 HOH HOH . 
F 6 HOH A 28 428 74 HOH HOH . 
F 6 HOH A 29 429 57 HOH HOH . 
F 6 HOH A 30 430 4 HOH HOH . 
F 6 HOH A 31 431 364 HOH HOH . 
F 6 HOH A 32 432 83 HOH HOH . 
F 6 HOH A 33 433 285 HOH HOH . 
F 6 HOH A 34 434 23 HOH HOH . 
F 6 HOH A 35 435 29 HOH HOH . 
F 6 HOH A 36 436 173 HOH HOH . 
F 6 HOH A 37 437 5 HOH HOH . 
F 6 HOH A 38 438 77 HOH HOH . 
F 6 HOH A 39 439 389 HOH HOH . 
F 6 HOH A 40 440 50 HOH HOH . 
F 6 HOH A 41 441 32 HOH HOH . 
F 6 HOH A 42 442 150 HOH HOH . 
F 6 HOH A 43 443 79 HOH HOH . 
F 6 HOH A 44 444 111 HOH HOH . 
F 6 HOH A 45 445 7 HOH HOH . 
F 6 HOH A 46 446 108 HOH HOH . 
F 6 HOH A 47 447 291 HOH HOH . 
F 6 HOH A 48 448 78 HOH HOH . 
F 6 HOH A 49 449 96 HOH HOH . 
F 6 HOH A 50 450 435 HOH HOH . 
F 6 HOH A 51 451 19 HOH HOH . 
F 6 HOH A 52 452 75 HOH HOH . 
F 6 HOH A 53 453 350 HOH HOH . 
F 6 HOH A 54 454 48 HOH HOH . 
F 6 HOH A 55 455 13 HOH HOH . 
F 6 HOH A 56 456 178 HOH HOH . 
F 6 HOH A 57 457 45 HOH HOH . 
F 6 HOH A 58 458 60 HOH HOH . 
F 6 HOH A 59 459 126 HOH HOH . 
F 6 HOH A 60 460 153 HOH HOH . 
F 6 HOH A 61 461 53 HOH HOH . 
F 6 HOH A 62 462 41 HOH HOH . 
F 6 HOH A 63 463 214 HOH HOH . 
F 6 HOH A 64 464 159 HOH HOH . 
F 6 HOH A 65 465 103 HOH HOH . 
F 6 HOH A 66 466 154 HOH HOH . 
F 6 HOH A 67 467 404 HOH HOH . 
F 6 HOH A 68 468 339 HOH HOH . 
F 6 HOH A 69 469 181 HOH HOH . 
F 6 HOH A 70 470 273 HOH HOH . 
F 6 HOH A 71 471 334 HOH HOH . 
F 6 HOH A 72 472 99 HOH HOH . 
F 6 HOH A 73 473 81 HOH HOH . 
F 6 HOH A 74 474 217 HOH HOH . 
F 6 HOH A 75 475 145 HOH HOH . 
F 6 HOH A 76 476 134 HOH HOH . 
F 6 HOH A 77 477 175 HOH HOH . 
F 6 HOH A 78 478 172 HOH HOH . 
F 6 HOH A 79 479 24 HOH HOH . 
F 6 HOH A 80 480 294 HOH HOH . 
F 6 HOH A 81 481 30 HOH HOH . 
F 6 HOH A 82 482 36 HOH HOH . 
F 6 HOH A 83 483 223 HOH HOH . 
F 6 HOH A 84 484 15 HOH HOH . 
F 6 HOH A 85 485 54 HOH HOH . 
F 6 HOH A 86 486 114 HOH HOH . 
F 6 HOH A 87 487 149 HOH HOH . 
F 6 HOH A 88 488 133 HOH HOH . 
F 6 HOH A 89 489 180 HOH HOH . 
F 6 HOH A 90 490 65 HOH HOH . 
F 6 HOH A 91 491 63 HOH HOH . 
F 6 HOH A 92 492 34 HOH HOH . 
F 6 HOH A 93 493 128 HOH HOH . 
F 6 HOH A 94 494 100 HOH HOH . 
F 6 HOH A 95 495 51 HOH HOH . 
F 6 HOH A 96 496 341 HOH HOH . 
F 6 HOH A 97 497 158 HOH HOH . 
F 6 HOH A 98 498 288 HOH HOH . 
F 6 HOH A 99 499 66 HOH HOH . 
F 6 HOH A 100 500 94 HOH HOH . 
F 6 HOH A 101 501 6 HOH HOH . 
F 6 HOH A 102 502 156 HOH HOH . 
F 6 HOH A 103 503 326 HOH HOH . 
F 6 HOH A 104 504 33 HOH HOH . 
F 6 HOH A 105 505 222 HOH HOH . 
F 6 HOH A 106 506 354 HOH HOH . 
F 6 HOH A 107 507 123 HOH HOH . 
F 6 HOH A 108 508 18 HOH HOH . 
F 6 HOH A 109 509 218 HOH HOH . 
F 6 HOH A 110 510 22 HOH HOH . 
F 6 HOH A 111 511 206 HOH HOH . 
F 6 HOH A 112 512 286 HOH HOH . 
F 6 HOH A 113 513 169 HOH HOH . 
F 6 HOH A 114 514 309 HOH HOH . 
F 6 HOH A 115 515 62 HOH HOH . 
F 6 HOH A 116 516 340 HOH HOH . 
F 6 HOH A 117 517 184 HOH HOH . 
F 6 HOH A 118 518 287 HOH HOH . 
F 6 HOH A 119 519 119 HOH HOH . 
F 6 HOH A 120 520 127 HOH HOH . 
F 6 HOH A 121 521 202 HOH HOH . 
F 6 HOH A 122 522 307 HOH HOH . 
F 6 HOH A 123 523 21 HOH HOH . 
F 6 HOH A 124 524 58 HOH HOH . 
F 6 HOH A 125 525 43 HOH HOH . 
F 6 HOH A 126 526 330 HOH HOH . 
F 6 HOH A 127 527 97 HOH HOH . 
F 6 HOH A 128 528 12 HOH HOH . 
F 6 HOH A 129 529 284 HOH HOH . 
F 6 HOH A 130 530 70 HOH HOH . 
F 6 HOH A 131 531 164 HOH HOH . 
F 6 HOH A 132 532 87 HOH HOH . 
F 6 HOH A 133 533 10 HOH HOH . 
F 6 HOH A 134 534 342 HOH HOH . 
F 6 HOH A 135 535 355 HOH HOH . 
F 6 HOH A 136 536 193 HOH HOH . 
F 6 HOH A 137 537 28 HOH HOH . 
F 6 HOH A 138 538 39 HOH HOH . 
F 6 HOH A 139 539 35 HOH HOH . 
F 6 HOH A 140 540 296 HOH HOH . 
F 6 HOH A 141 541 386 HOH HOH . 
F 6 HOH A 142 542 144 HOH HOH . 
F 6 HOH A 143 543 335 HOH HOH . 
F 6 HOH A 144 544 44 HOH HOH . 
F 6 HOH A 145 545 26 HOH HOH . 
F 6 HOH A 146 546 11 HOH HOH . 
F 6 HOH A 147 547 408 HOH HOH . 
F 6 HOH A 148 548 59 HOH HOH . 
F 6 HOH A 149 549 25 HOH HOH . 
F 6 HOH A 150 550 42 HOH HOH . 
F 6 HOH A 151 551 157 HOH HOH . 
F 6 HOH A 152 552 116 HOH HOH . 
F 6 HOH A 153 553 416 HOH HOH . 
F 6 HOH A 154 554 92 HOH HOH . 
F 6 HOH A 155 555 440 HOH HOH . 
F 6 HOH A 156 556 242 HOH HOH . 
F 6 HOH A 157 557 293 HOH HOH . 
F 6 HOH A 158 558 76 HOH HOH . 
F 6 HOH A 159 559 290 HOH HOH . 
F 6 HOH A 160 560 344 HOH HOH . 
F 6 HOH A 161 561 174 HOH HOH . 
F 6 HOH A 162 562 120 HOH HOH . 
F 6 HOH A 163 563 387 HOH HOH . 
F 6 HOH A 164 564 328 HOH HOH . 
F 6 HOH A 165 565 366 HOH HOH . 
F 6 HOH A 166 566 148 HOH HOH . 
F 6 HOH A 167 567 37 HOH HOH . 
F 6 HOH A 168 568 348 HOH HOH . 
F 6 HOH A 169 569 398 HOH HOH . 
F 6 HOH A 170 570 113 HOH HOH . 
F 6 HOH A 171 571 69 HOH HOH . 
F 6 HOH A 172 572 324 HOH HOH . 
F 6 HOH A 173 573 301 HOH HOH . 
F 6 HOH A 174 574 343 HOH HOH . 
F 6 HOH A 175 575 107 HOH HOH . 
F 6 HOH A 176 576 234 HOH HOH . 
F 6 HOH A 177 577 380 HOH HOH . 
F 6 HOH A 178 578 263 HOH HOH . 
F 6 HOH A 179 579 17 HOH HOH . 
F 6 HOH A 180 580 90 HOH HOH . 
F 6 HOH A 181 581 72 HOH HOH . 
F 6 HOH A 182 582 303 HOH HOH . 
F 6 HOH A 183 583 436 HOH HOH . 
F 6 HOH A 184 584 317 HOH HOH . 
F 6 HOH A 185 585 298 HOH HOH . 
F 6 HOH A 186 586 160 HOH HOH . 
F 6 HOH A 187 587 388 HOH HOH . 
F 6 HOH A 188 588 170 HOH HOH . 
F 6 HOH A 189 589 376 HOH HOH . 
F 6 HOH A 190 590 321 HOH HOH . 
F 6 HOH A 191 591 198 HOH HOH . 
F 6 HOH A 192 592 138 HOH HOH . 
F 6 HOH A 193 593 383 HOH HOH . 
F 6 HOH A 194 594 132 HOH HOH . 
F 6 HOH A 195 595 122 HOH HOH . 
F 6 HOH A 196 596 52 HOH HOH . 
F 6 HOH A 197 597 121 HOH HOH . 
F 6 HOH A 198 598 311 HOH HOH . 
F 6 HOH A 199 599 194 HOH HOH . 
F 6 HOH A 200 600 189 HOH HOH . 
F 6 HOH A 201 601 68 HOH HOH . 
F 6 HOH A 202 602 379 HOH HOH . 
F 6 HOH A 203 603 292 HOH HOH . 
F 6 HOH A 204 604 95 HOH HOH . 
F 6 HOH A 205 605 71 HOH HOH . 
F 6 HOH A 206 606 392 HOH HOH . 
F 6 HOH A 207 607 367 HOH HOH . 
F 6 HOH A 208 608 308 HOH HOH . 
F 6 HOH A 209 609 40 HOH HOH . 
F 6 HOH A 210 610 131 HOH HOH . 
F 6 HOH A 211 611 430 HOH HOH . 
F 6 HOH A 212 612 67 HOH HOH . 
F 6 HOH A 213 613 141 HOH HOH . 
F 6 HOH A 214 614 425 HOH HOH . 
F 6 HOH A 215 615 300 HOH HOH . 
F 6 HOH A 216 616 91 HOH HOH . 
F 6 HOH A 217 617 429 HOH HOH . 
F 6 HOH A 218 618 319 HOH HOH . 
F 6 HOH A 219 619 137 HOH HOH . 
F 6 HOH A 220 620 415 HOH HOH . 
F 6 HOH A 221 621 439 HOH HOH . 
F 6 HOH A 222 622 163 HOH HOH . 
F 6 HOH A 223 623 143 HOH HOH . 
F 6 HOH A 224 624 136 HOH HOH . 
F 6 HOH A 225 625 402 HOH HOH . 
F 6 HOH A 226 626 237 HOH HOH . 
F 6 HOH A 227 627 320 HOH HOH . 
F 6 HOH A 228 628 331 HOH HOH . 
F 6 HOH A 229 629 171 HOH HOH . 
F 6 HOH A 230 630 64 HOH HOH . 
F 6 HOH A 231 631 322 HOH HOH . 
F 6 HOH A 232 632 315 HOH HOH . 
F 6 HOH A 233 633 337 HOH HOH . 
F 6 HOH A 234 634 361 HOH HOH . 
F 6 HOH A 235 635 146 HOH HOH . 
F 6 HOH A 236 636 438 HOH HOH . 
F 6 HOH A 237 637 305 HOH HOH . 
F 6 HOH A 238 638 142 HOH HOH . 
F 6 HOH A 239 639 89 HOH HOH . 
F 6 HOH A 240 640 318 HOH HOH . 
F 6 HOH A 241 641 195 HOH HOH . 
F 6 HOH A 242 642 333 HOH HOH . 
F 6 HOH A 243 643 336 HOH HOH . 
F 6 HOH A 244 644 332 HOH HOH . 
F 6 HOH A 245 645 27 HOH HOH . 
F 6 HOH A 246 646 371 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -34.799 
_atom_site.Cartn_y               40.767 
_atom_site.Cartn_z               -21.041 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        21.21 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#