data_5O72
#
_model_server_result.job_id            5vf3QARrRax_yjk6NT16bQ 
_model_server_result.datetime_utc      '2024-12-25 05:24:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5o72 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    5O72 
#
_exptl.entry_id    5O72 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5O72 
_cell.length_a            92.151 
_cell.length_b            92.151 
_cell.length_c            133.191 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5O72 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 92.151 0 
3 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 6_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 92.151 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 257 A CYS 255 1_555 A SG CYS 257 A CYS 255 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc1 A O GLU 52 A GLU 50 1_555 B NA NA . A NA 301 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc2 A O GLU 52 A GLU 50 1_555 B NA NA . A NA 301 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc3 A O LEU 55 A LEU 53 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc4 A O ALA 58 A ALA 56 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc5 B NA NA . A NA 301 1_555 E O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? 
metalc ? metalc6 B NA NA . A NA 301 1_555 E O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc7 B NA NA . A NA 301 1_555 E O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5O72 
_atom_sites.fract_transf_matrix[1][1]    0.010852 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010852 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007508 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 301 1 NA NA . 
C 3 NAD A 1 302 1 NAD NAD . 
D 4 9MH A 1 303 1 9MH M11 . 
E 5 HOH A 1 401 257 HOH HOH . 
E 5 HOH A 2 402 321 HOH HOH . 
E 5 HOH A 3 403 269 HOH HOH . 
E 5 HOH A 4 404 99 HOH HOH . 
E 5 HOH A 5 405 329 HOH HOH . 
E 5 HOH A 6 406 314 HOH HOH . 
E 5 HOH A 7 407 261 HOH HOH . 
E 5 HOH A 8 408 347 HOH HOH . 
E 5 HOH A 9 409 338 HOH HOH . 
E 5 HOH A 10 410 339 HOH HOH . 
E 5 HOH A 11 411 56 HOH HOH . 
E 5 HOH A 12 412 65 HOH HOH . 
E 5 HOH A 13 413 299 HOH HOH . 
E 5 HOH A 14 414 94 HOH HOH . 
E 5 HOH A 15 415 369 HOH HOH . 
E 5 HOH A 16 416 53 HOH HOH . 
E 5 HOH A 17 417 13 HOH HOH . 
E 5 HOH A 18 418 20 HOH HOH . 
E 5 HOH A 19 419 41 HOH HOH . 
E 5 HOH A 20 420 4 HOH HOH . 
E 5 HOH A 21 421 279 HOH HOH . 
E 5 HOH A 22 422 267 HOH HOH . 
E 5 HOH A 23 423 9 HOH HOH . 
E 5 HOH A 24 424 256 HOH HOH . 
E 5 HOH A 25 425 5 HOH HOH . 
E 5 HOH A 26 426 344 HOH HOH . 
E 5 HOH A 27 427 77 HOH HOH . 
E 5 HOH A 28 428 36 HOH HOH . 
E 5 HOH A 29 429 153 HOH HOH . 
E 5 HOH A 30 430 49 HOH HOH . 
E 5 HOH A 31 431 254 HOH HOH . 
E 5 HOH A 32 432 61 HOH HOH . 
E 5 HOH A 33 433 259 HOH HOH . 
E 5 HOH A 34 434 54 HOH HOH . 
E 5 HOH A 35 435 23 HOH HOH . 
E 5 HOH A 36 436 16 HOH HOH . 
E 5 HOH A 37 437 45 HOH HOH . 
E 5 HOH A 38 438 322 HOH HOH . 
E 5 HOH A 39 439 342 HOH HOH . 
E 5 HOH A 40 440 51 HOH HOH . 
E 5 HOH A 41 441 30 HOH HOH . 
E 5 HOH A 42 442 238 HOH HOH . 
E 5 HOH A 43 443 280 HOH HOH . 
E 5 HOH A 44 444 47 HOH HOH . 
E 5 HOH A 45 445 330 HOH HOH . 
E 5 HOH A 46 446 78 HOH HOH . 
E 5 HOH A 47 447 24 HOH HOH . 
E 5 HOH A 48 448 285 HOH HOH . 
E 5 HOH A 49 449 368 HOH HOH . 
E 5 HOH A 50 450 145 HOH HOH . 
E 5 HOH A 51 451 19 HOH HOH . 
E 5 HOH A 52 452 7 HOH HOH . 
E 5 HOH A 53 453 294 HOH HOH . 
E 5 HOH A 54 454 8 HOH HOH . 
E 5 HOH A 55 455 284 HOH HOH . 
E 5 HOH A 56 456 244 HOH HOH . 
E 5 HOH A 57 457 353 HOH HOH . 
E 5 HOH A 58 458 241 HOH HOH . 
E 5 HOH A 59 459 290 HOH HOH . 
E 5 HOH A 60 460 184 HOH HOH . 
E 5 HOH A 61 461 364 HOH HOH . 
E 5 HOH A 62 462 178 HOH HOH . 
E 5 HOH A 63 463 310 HOH HOH . 
E 5 HOH A 64 464 34 HOH HOH . 
E 5 HOH A 65 465 242 HOH HOH . 
E 5 HOH A 66 466 60 HOH HOH . 
E 5 HOH A 67 467 105 HOH HOH . 
E 5 HOH A 68 468 66 HOH HOH . 
E 5 HOH A 69 469 253 HOH HOH . 
E 5 HOH A 70 470 208 HOH HOH . 
E 5 HOH A 71 471 245 HOH HOH . 
E 5 HOH A 72 472 6 HOH HOH . 
E 5 HOH A 73 473 18 HOH HOH . 
E 5 HOH A 74 474 15 HOH HOH . 
E 5 HOH A 75 475 12 HOH HOH . 
E 5 HOH A 76 476 300 HOH HOH . 
E 5 HOH A 77 477 296 HOH HOH . 
E 5 HOH A 78 478 22 HOH HOH . 
E 5 HOH A 79 479 43 HOH HOH . 
E 5 HOH A 80 480 217 HOH HOH . 
E 5 HOH A 81 481 38 HOH HOH . 
E 5 HOH A 82 482 270 HOH HOH . 
E 5 HOH A 83 483 374 HOH HOH . 
E 5 HOH A 84 484 298 HOH HOH . 
E 5 HOH A 85 485 35 HOH HOH . 
E 5 HOH A 86 486 252 HOH HOH . 
E 5 HOH A 87 487 50 HOH HOH . 
E 5 HOH A 88 488 128 HOH HOH . 
E 5 HOH A 89 489 28 HOH HOH . 
E 5 HOH A 90 490 315 HOH HOH . 
E 5 HOH A 91 491 303 HOH HOH . 
E 5 HOH A 92 492 25 HOH HOH . 
E 5 HOH A 93 493 365 HOH HOH . 
E 5 HOH A 94 494 62 HOH HOH . 
E 5 HOH A 95 495 277 HOH HOH . 
E 5 HOH A 96 496 282 HOH HOH . 
E 5 HOH A 97 497 317 HOH HOH . 
E 5 HOH A 98 498 58 HOH HOH . 
E 5 HOH A 99 499 246 HOH HOH . 
E 5 HOH A 100 500 327 HOH HOH . 
E 5 HOH A 101 501 370 HOH HOH . 
E 5 HOH A 102 502 309 HOH HOH . 
E 5 HOH A 103 503 255 HOH HOH . 
E 5 HOH A 104 504 343 HOH HOH . 
E 5 HOH A 105 505 48 HOH HOH . 
E 5 HOH A 106 506 287 HOH HOH . 
E 5 HOH A 107 507 116 HOH HOH . 
E 5 HOH A 108 508 273 HOH HOH . 
E 5 HOH A 109 509 288 HOH HOH . 
E 5 HOH A 110 510 286 HOH HOH . 
E 5 HOH A 111 511 258 HOH HOH . 
E 5 HOH A 112 512 248 HOH HOH . 
E 5 HOH A 113 513 26 HOH HOH . 
E 5 HOH A 114 514 295 HOH HOH . 
E 5 HOH A 115 515 37 HOH HOH . 
E 5 HOH A 116 516 274 HOH HOH . 
E 5 HOH A 117 517 335 HOH HOH . 
E 5 HOH A 118 518 361 HOH HOH . 
E 5 HOH A 119 519 39 HOH HOH . 
E 5 HOH A 120 520 371 HOH HOH . 
E 5 HOH A 121 521 29 HOH HOH . 
E 5 HOH A 122 522 42 HOH HOH . 
E 5 HOH A 123 523 235 HOH HOH . 
E 5 HOH A 124 524 293 HOH HOH . 
E 5 HOH A 125 525 11 HOH HOH . 
E 5 HOH A 126 526 350 HOH HOH . 
E 5 HOH A 127 527 120 HOH HOH . 
E 5 HOH A 128 528 307 HOH HOH . 
E 5 HOH A 129 529 306 HOH HOH . 
E 5 HOH A 130 530 240 HOH HOH . 
E 5 HOH A 131 531 266 HOH HOH . 
E 5 HOH A 132 532 236 HOH HOH . 
E 5 HOH A 133 533 250 HOH HOH . 
E 5 HOH A 134 534 148 HOH HOH . 
E 5 HOH A 135 535 359 HOH HOH . 
E 5 HOH A 136 536 278 HOH HOH . 
E 5 HOH A 137 537 360 HOH HOH . 
E 5 HOH A 138 538 127 HOH HOH . 
E 5 HOH A 139 539 352 HOH HOH . 
E 5 HOH A 140 540 323 HOH HOH . 
E 5 HOH A 141 541 275 HOH HOH . 
E 5 HOH A 142 542 324 HOH HOH . 
E 5 HOH A 143 543 237 HOH HOH . 
E 5 HOH A 144 544 69 HOH HOH . 
E 5 HOH A 145 545 345 HOH HOH . 
E 5 HOH A 146 546 17 HOH HOH . 
E 5 HOH A 147 547 302 HOH HOH . 
E 5 HOH A 148 548 70 HOH HOH . 
E 5 HOH A 149 549 363 HOH HOH . 
E 5 HOH A 150 550 234 HOH HOH . 
E 5 HOH A 151 551 59 HOH HOH . 
E 5 HOH A 152 552 304 HOH HOH . 
E 5 HOH A 153 553 113 HOH HOH . 
E 5 HOH A 154 554 247 HOH HOH . 
E 5 HOH A 155 555 44 HOH HOH . 
E 5 HOH A 156 556 90 HOH HOH . 
E 5 HOH A 157 557 289 HOH HOH . 
E 5 HOH A 158 558 305 HOH HOH . 
E 5 HOH A 159 559 349 HOH HOH . 
E 5 HOH A 160 560 72 HOH HOH . 
E 5 HOH A 161 561 291 HOH HOH . 
E 5 HOH A 162 562 132 HOH HOH . 
E 5 HOH A 163 563 292 HOH HOH . 
E 5 HOH A 164 564 249 HOH HOH . 
E 5 HOH A 165 565 367 HOH HOH . 
E 5 HOH A 166 566 71 HOH HOH . 
E 5 HOH A 167 567 52 HOH HOH . 
E 5 HOH A 168 568 283 HOH HOH . 
E 5 HOH A 169 569 271 HOH HOH . 
E 5 HOH A 170 570 68 HOH HOH . 
E 5 HOH A 171 571 312 HOH HOH . 
E 5 HOH A 172 572 320 HOH HOH . 
E 5 HOH A 173 573 138 HOH HOH . 
E 5 HOH A 174 574 357 HOH HOH . 
E 5 HOH A 175 575 141 HOH HOH . 
E 5 HOH A 176 576 332 HOH HOH . 
E 5 HOH A 177 577 268 HOH HOH . 
E 5 HOH A 178 578 373 HOH HOH . 
E 5 HOH A 179 579 243 HOH HOH . 
E 5 HOH A 180 580 40 HOH HOH . 
E 5 HOH A 181 581 308 HOH HOH . 
E 5 HOH A 182 582 313 HOH HOH . 
E 5 HOH A 183 583 67 HOH HOH . 
E 5 HOH A 184 584 163 HOH HOH . 
E 5 HOH A 185 585 251 HOH HOH . 
E 5 HOH A 186 586 325 HOH HOH . 
E 5 HOH A 187 587 137 HOH HOH . 
E 5 HOH A 188 588 316 HOH HOH . 
E 5 HOH A 189 589 239 HOH HOH . 
E 5 HOH A 190 590 328 HOH HOH . 
E 5 HOH A 191 591 351 HOH HOH . 
E 5 HOH A 192 592 326 HOH HOH . 
E 5 HOH A 193 593 318 HOH HOH . 
E 5 HOH A 194 594 333 HOH HOH . 
E 5 HOH A 195 595 319 HOH HOH . 
E 5 HOH A 196 596 260 HOH HOH . 
E 5 HOH A 197 597 331 HOH HOH . 
E 5 HOH A 198 598 362 HOH HOH . 
E 5 HOH A 199 599 366 HOH HOH . 
E 5 HOH A 200 600 263 HOH HOH . 
E 5 HOH A 201 601 340 HOH HOH . 
E 5 HOH A 202 602 27 HOH HOH . 
E 5 HOH A 203 603 334 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -35.213 
_atom_site.Cartn_y               41.211 
_atom_site.Cartn_z               -20.833 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        23.64 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           1 
#