data_5O77 # _model_server_result.job_id CM5kyO2JMu7sKQS8ksCPew _model_server_result.datetime_utc '2024-11-12 23:13:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o77 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5O77 # _exptl.entry_id 5O77 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5O77 _cell.length_a 77.312 _cell.length_b 77.312 _cell.length_c 114.044 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O77 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -77.312 0 0 3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -38.656 -66.954156 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 375 n n C C2 TRS sing 376 n n C C3 TRS sing 377 n n C N TRS sing 378 n n C1 O1 TRS sing 379 n n C1 H11 TRS sing 380 n n C1 H12 TRS sing 381 n n C2 O2 TRS sing 382 n n C2 H21 TRS sing 383 n n C2 H22 TRS sing 384 n n C3 O3 TRS sing 385 n n C3 H31 TRS sing 386 n n C3 H32 TRS sing 387 n n N HN1 TRS sing 388 n n N HN2 TRS sing 389 n n N HN3 TRS sing 390 n n O1 HO1 TRS sing 391 n n O2 HO2 TRS sing 392 n n O3 HO3 TRS sing 393 n n # _atom_sites.entry_id 5O77 _atom_sites.fract_transf_matrix[1][1] 0.012935 _atom_sites.fract_transf_matrix[1][2] 0.007468 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014936 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 401 1 TRS TRS . C 2 TRS A 1 402 2 TRS TRS . D 3 C8E A 1 403 1 C8E C8E . E 3 C8E A 1 404 2 C8E C8E . F 4 HOH A 1 501 257 HOH HOH . F 4 HOH A 2 502 240 HOH HOH . F 4 HOH A 3 503 245 HOH HOH . F 4 HOH A 4 504 263 HOH HOH . F 4 HOH A 5 505 288 HOH HOH . F 4 HOH A 6 506 43 HOH HOH . F 4 HOH A 7 507 199 HOH HOH . F 4 HOH A 8 508 131 HOH HOH . F 4 HOH A 9 509 250 HOH HOH . F 4 HOH A 10 510 246 HOH HOH . F 4 HOH A 11 511 58 HOH HOH . F 4 HOH A 12 512 59 HOH HOH . F 4 HOH A 13 513 188 HOH HOH . F 4 HOH A 14 514 300 HOH HOH . F 4 HOH A 15 515 82 HOH HOH . F 4 HOH A 16 516 270 HOH HOH . F 4 HOH A 17 517 279 HOH HOH . F 4 HOH A 18 518 217 HOH HOH . F 4 HOH A 19 519 157 HOH HOH . F 4 HOH A 20 520 91 HOH HOH . F 4 HOH A 21 521 264 HOH HOH . F 4 HOH A 22 522 176 HOH HOH . F 4 HOH A 23 523 242 HOH HOH . F 4 HOH A 24 524 127 HOH HOH . F 4 HOH A 25 525 184 HOH HOH . F 4 HOH A 26 526 40 HOH HOH . F 4 HOH A 27 527 302 HOH HOH . F 4 HOH A 28 528 78 HOH HOH . F 4 HOH A 29 529 256 HOH HOH . F 4 HOH A 30 530 17 HOH HOH . F 4 HOH A 31 531 219 HOH HOH . F 4 HOH A 32 532 3 HOH HOH . F 4 HOH A 33 533 253 HOH HOH . F 4 HOH A 34 534 248 HOH HOH . F 4 HOH A 35 535 4 HOH HOH . F 4 HOH A 36 536 72 HOH HOH . F 4 HOH A 37 537 229 HOH HOH . F 4 HOH A 38 538 292 HOH HOH . F 4 HOH A 39 539 11 HOH HOH . F 4 HOH A 40 540 235 HOH HOH . F 4 HOH A 41 541 160 HOH HOH . F 4 HOH A 42 542 154 HOH HOH . F 4 HOH A 43 543 137 HOH HOH . F 4 HOH A 44 544 41 HOH HOH . F 4 HOH A 45 545 113 HOH HOH . F 4 HOH A 46 546 110 HOH HOH . F 4 HOH A 47 547 122 HOH HOH . F 4 HOH A 48 548 68 HOH HOH . F 4 HOH A 49 549 22 HOH HOH . F 4 HOH A 50 550 50 HOH HOH . F 4 HOH A 51 551 241 HOH HOH . F 4 HOH A 52 552 84 HOH HOH . F 4 HOH A 53 553 249 HOH HOH . F 4 HOH A 54 554 150 HOH HOH . F 4 HOH A 55 555 19 HOH HOH . F 4 HOH A 56 556 52 HOH HOH . F 4 HOH A 57 557 27 HOH HOH . F 4 HOH A 58 558 96 HOH HOH . F 4 HOH A 59 559 197 HOH HOH . F 4 HOH A 60 560 262 HOH HOH . F 4 HOH A 61 561 295 HOH HOH . F 4 HOH A 62 562 281 HOH HOH . F 4 HOH A 63 563 169 HOH HOH . F 4 HOH A 64 564 26 HOH HOH . F 4 HOH A 65 565 6 HOH HOH . F 4 HOH A 66 566 285 HOH HOH . F 4 HOH A 67 567 15 HOH HOH . F 4 HOH A 68 568 45 HOH HOH . F 4 HOH A 69 569 179 HOH HOH . F 4 HOH A 70 570 71 HOH HOH . F 4 HOH A 71 571 37 HOH HOH . F 4 HOH A 72 572 202 HOH HOH . F 4 HOH A 73 573 214 HOH HOH . F 4 HOH A 74 574 178 HOH HOH . F 4 HOH A 75 575 36 HOH HOH . F 4 HOH A 76 576 8 HOH HOH . F 4 HOH A 77 577 135 HOH HOH . F 4 HOH A 78 578 7 HOH HOH . F 4 HOH A 79 579 185 HOH HOH . F 4 HOH A 80 580 104 HOH HOH . F 4 HOH A 81 581 28 HOH HOH . F 4 HOH A 82 582 273 HOH HOH . F 4 HOH A 83 583 124 HOH HOH . F 4 HOH A 84 584 63 HOH HOH . F 4 HOH A 85 585 73 HOH HOH . F 4 HOH A 86 586 86 HOH HOH . F 4 HOH A 87 587 207 HOH HOH . F 4 HOH A 88 588 289 HOH HOH . F 4 HOH A 89 589 294 HOH HOH . F 4 HOH A 90 590 39 HOH HOH . F 4 HOH A 91 591 105 HOH HOH . F 4 HOH A 92 592 60 HOH HOH . F 4 HOH A 93 593 21 HOH HOH . F 4 HOH A 94 594 191 HOH HOH . F 4 HOH A 95 595 284 HOH HOH . F 4 HOH A 96 596 31 HOH HOH . F 4 HOH A 97 597 108 HOH HOH . F 4 HOH A 98 598 118 HOH HOH . F 4 HOH A 99 599 70 HOH HOH . F 4 HOH A 100 600 12 HOH HOH . F 4 HOH A 101 601 275 HOH HOH . F 4 HOH A 102 602 47 HOH HOH . F 4 HOH A 103 603 119 HOH HOH . F 4 HOH A 104 604 143 HOH HOH . F 4 HOH A 105 605 192 HOH HOH . F 4 HOH A 106 606 77 HOH HOH . F 4 HOH A 107 607 44 HOH HOH . F 4 HOH A 108 608 90 HOH HOH . F 4 HOH A 109 609 269 HOH HOH . F 4 HOH A 110 610 23 HOH HOH . F 4 HOH A 111 611 94 HOH HOH . F 4 HOH A 112 612 251 HOH HOH . F 4 HOH A 113 613 255 HOH HOH . F 4 HOH A 114 614 147 HOH HOH . F 4 HOH A 115 615 76 HOH HOH . F 4 HOH A 116 616 53 HOH HOH . F 4 HOH A 117 617 144 HOH HOH . F 4 HOH A 118 618 254 HOH HOH . F 4 HOH A 119 619 109 HOH HOH . F 4 HOH A 120 620 67 HOH HOH . F 4 HOH A 121 621 187 HOH HOH . F 4 HOH A 122 622 114 HOH HOH . F 4 HOH A 123 623 298 HOH HOH . F 4 HOH A 124 624 218 HOH HOH . F 4 HOH A 125 625 46 HOH HOH . F 4 HOH A 126 626 42 HOH HOH . F 4 HOH A 127 627 18 HOH HOH . F 4 HOH A 128 628 98 HOH HOH . F 4 HOH A 129 629 287 HOH HOH . F 4 HOH A 130 630 132 HOH HOH . F 4 HOH A 131 631 212 HOH HOH . F 4 HOH A 132 632 286 HOH HOH . F 4 HOH A 133 633 299 HOH HOH . F 4 HOH A 134 634 211 HOH HOH . F 4 HOH A 135 635 20 HOH HOH . F 4 HOH A 136 636 29 HOH HOH . F 4 HOH A 137 637 271 HOH HOH . F 4 HOH A 138 638 181 HOH HOH . F 4 HOH A 139 639 2 HOH HOH . F 4 HOH A 140 640 79 HOH HOH . F 4 HOH A 141 641 291 HOH HOH . F 4 HOH A 142 642 203 HOH HOH . F 4 HOH A 143 643 283 HOH HOH . F 4 HOH A 144 644 32 HOH HOH . F 4 HOH A 145 645 171 HOH HOH . F 4 HOH A 146 646 268 HOH HOH . F 4 HOH A 147 647 274 HOH HOH . F 4 HOH A 148 648 304 HOH HOH . F 4 HOH A 149 649 115 HOH HOH . F 4 HOH A 150 650 100 HOH HOH . F 4 HOH A 151 651 163 HOH HOH . F 4 HOH A 152 652 85 HOH HOH . F 4 HOH A 153 653 95 HOH HOH . F 4 HOH A 154 654 9 HOH HOH . F 4 HOH A 155 655 54 HOH HOH . F 4 HOH A 156 656 161 HOH HOH . F 4 HOH A 157 657 145 HOH HOH . F 4 HOH A 158 658 65 HOH HOH . F 4 HOH A 159 659 57 HOH HOH . F 4 HOH A 160 660 14 HOH HOH . F 4 HOH A 161 661 297 HOH HOH . F 4 HOH A 162 662 92 HOH HOH . F 4 HOH A 163 663 198 HOH HOH . F 4 HOH A 164 664 224 HOH HOH . F 4 HOH A 165 665 186 HOH HOH . F 4 HOH A 166 666 102 HOH HOH . F 4 HOH A 167 667 162 HOH HOH . F 4 HOH A 168 668 103 HOH HOH . F 4 HOH A 169 669 133 HOH HOH . F 4 HOH A 170 670 238 HOH HOH . F 4 HOH A 171 671 101 HOH HOH . F 4 HOH A 172 672 205 HOH HOH . F 4 HOH A 173 673 239 HOH HOH . F 4 HOH A 174 674 167 HOH HOH . F 4 HOH A 175 675 180 HOH HOH . F 4 HOH A 176 676 168 HOH HOH . F 4 HOH A 177 677 232 HOH HOH . F 4 HOH A 178 678 125 HOH HOH . F 4 HOH A 179 679 75 HOH HOH . F 4 HOH A 180 680 25 HOH HOH . F 4 HOH A 181 681 66 HOH HOH . F 4 HOH A 182 682 303 HOH HOH . F 4 HOH A 183 683 276 HOH HOH . F 4 HOH A 184 684 247 HOH HOH . F 4 HOH A 185 685 153 HOH HOH . F 4 HOH A 186 686 213 HOH HOH . F 4 HOH A 187 687 10 HOH HOH . F 4 HOH A 188 688 196 HOH HOH . F 4 HOH A 189 689 175 HOH HOH . F 4 HOH A 190 690 117 HOH HOH . F 4 HOH A 191 691 266 HOH HOH . F 4 HOH A 192 692 106 HOH HOH . F 4 HOH A 193 693 227 HOH HOH . F 4 HOH A 194 694 61 HOH HOH . F 4 HOH A 195 695 123 HOH HOH . F 4 HOH A 196 696 158 HOH HOH . F 4 HOH A 197 697 69 HOH HOH . F 4 HOH A 198 698 177 HOH HOH . F 4 HOH A 199 699 301 HOH HOH . F 4 HOH A 200 700 24 HOH HOH . F 4 HOH A 201 701 166 HOH HOH . F 4 HOH A 202 702 190 HOH HOH . F 4 HOH A 203 703 146 HOH HOH . F 4 HOH A 204 704 34 HOH HOH . F 4 HOH A 205 705 243 HOH HOH . F 4 HOH A 206 706 120 HOH HOH . F 4 HOH A 207 707 88 HOH HOH . F 4 HOH A 208 708 64 HOH HOH . F 4 HOH A 209 709 296 HOH HOH . F 4 HOH A 210 710 89 HOH HOH . F 4 HOH A 211 711 48 HOH HOH . F 4 HOH A 212 712 260 HOH HOH . F 4 HOH A 213 713 267 HOH HOH . F 4 HOH A 214 714 152 HOH HOH . F 4 HOH A 215 715 13 HOH HOH . F 4 HOH A 216 716 56 HOH HOH . F 4 HOH A 217 717 93 HOH HOH . F 4 HOH A 218 718 136 HOH HOH . F 4 HOH A 219 719 277 HOH HOH . F 4 HOH A 220 720 148 HOH HOH . F 4 HOH A 221 721 55 HOH HOH . F 4 HOH A 222 722 138 HOH HOH . F 4 HOH A 223 723 210 HOH HOH . F 4 HOH A 224 724 225 HOH HOH . F 4 HOH A 225 725 51 HOH HOH . F 4 HOH A 226 726 293 HOH HOH . F 4 HOH A 227 727 30 HOH HOH . F 4 HOH A 228 728 134 HOH HOH . F 4 HOH A 229 729 265 HOH HOH . F 4 HOH A 230 730 121 HOH HOH . F 4 HOH A 231 731 244 HOH HOH . F 4 HOH A 232 732 107 HOH HOH . F 4 HOH A 233 733 195 HOH HOH . F 4 HOH A 234 734 16 HOH HOH . F 4 HOH A 235 735 97 HOH HOH . F 4 HOH A 236 736 49 HOH HOH . F 4 HOH A 237 737 173 HOH HOH . F 4 HOH A 238 738 33 HOH HOH . F 4 HOH A 239 739 38 HOH HOH . F 4 HOH A 240 740 237 HOH HOH . F 4 HOH A 241 741 140 HOH HOH . F 4 HOH A 242 742 221 HOH HOH . F 4 HOH A 243 743 112 HOH HOH . F 4 HOH A 244 744 290 HOH HOH . F 4 HOH A 245 745 83 HOH HOH . F 4 HOH A 246 746 172 HOH HOH . F 4 HOH A 247 747 223 HOH HOH . F 4 HOH A 248 748 111 HOH HOH . F 4 HOH A 249 749 164 HOH HOH . F 4 HOH A 250 750 182 HOH HOH . F 4 HOH A 251 751 236 HOH HOH . F 4 HOH A 252 752 234 HOH HOH . F 4 HOH A 253 753 261 HOH HOH . F 4 HOH A 254 754 81 HOH HOH . F 4 HOH A 255 755 151 HOH HOH . F 4 HOH A 256 756 99 HOH HOH . F 4 HOH A 257 757 139 HOH HOH . F 4 HOH A 258 758 272 HOH HOH . F 4 HOH A 259 759 156 HOH HOH . F 4 HOH A 260 760 231 HOH HOH . F 4 HOH A 261 761 35 HOH HOH . F 4 HOH A 262 762 282 HOH HOH . F 4 HOH A 263 763 126 HOH HOH . F 4 HOH A 264 764 305 HOH HOH . F 4 HOH A 265 765 259 HOH HOH . F 4 HOH A 266 766 116 HOH HOH . F 4 HOH A 267 767 183 HOH HOH . F 4 HOH A 268 768 208 HOH HOH . F 4 HOH A 269 769 128 HOH HOH . F 4 HOH A 270 770 216 HOH HOH . F 4 HOH A 271 771 129 HOH HOH . F 4 HOH A 272 772 142 HOH HOH . F 4 HOH A 273 773 252 HOH HOH . F 4 HOH A 274 774 74 HOH HOH . F 4 HOH A 275 775 280 HOH HOH . F 4 HOH A 276 776 233 HOH HOH . F 4 HOH A 277 777 204 HOH HOH . F 4 HOH A 278 778 258 HOH HOH . F 4 HOH A 279 779 278 HOH HOH . F 4 HOH A 280 780 230 HOH HOH . F 4 HOH A 281 781 165 HOH HOH . F 4 HOH A 282 782 130 HOH HOH . F 4 HOH A 283 783 226 HOH HOH . F 4 HOH A 284 784 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . B 2 -19.212 -26.073 2.86 1 23.33 ? C TRS 401 A 1 HETATM 2 C C1 TRS . . . B 2 -20.056 -24.887 2.442 1 22.07 ? C1 TRS 401 A 1 HETATM 3 C C2 TRS . . . B 2 -19.948 -27.395 2.901 1 25.79 ? C2 TRS 401 A 1 HETATM 4 C C3 TRS . . . B 2 -18.694 -25.737 4.239 1 25.87 ? C3 TRS 401 A 1 HETATM 5 N N TRS . . . B 2 -18.132 -26.2 1.866 1 24.08 ? N TRS 401 A 1 HETATM 6 O O1 TRS . . . B 2 -20.552 -25.057 1.094 1 20.88 ? O1 TRS 401 A 1 HETATM 7 O O2 TRS . . . B 2 -20.393 -27.636 1.584 1 27.97 ? O2 TRS 401 A 1 HETATM 8 O O3 TRS . . . B 2 -17.912 -26.854 4.717 1 25.2 ? O3 TRS 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #