data_5O7X # _model_server_result.job_id CLYQt9a_aB3hgNgqngZEdA _model_server_result.datetime_utc '2025-01-05 01:34:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o7x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":1001}' # _entry.id 5O7X # _exptl.entry_id 5O7X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 30 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.02 _cell.angle_beta 90.01 _cell.angle_gamma 59.98 _cell.entry_id 5O7X _cell.length_a 109.07 _cell.length_b 109.14 _cell.length_c 385.64 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O7X _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 PISA trimeric 3 software_defined_assembly 3 PISA trimeric 3 software_defined_assembly 4 PISA trimeric 3 software_defined_assembly 5 PISA trimeric 3 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,S,T,U,V,W,X 1 1 D,E,F,Y,Z,AA,BA,CA,DA 2 1 G,H,I,EA,FA,GA,HA,IA,JA 3 1 J,K,L,KA,LA,MA,NA,OA,PA 4 1 M,N,O,QA,RA,SA,TA,UA,VA 5 1 P,Q,R,WA,XA,YA,ZA,AB,BB 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 S N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 W N N ? 4 Y N N ? 4 Z N N ? 4 AA N N ? 4 BA N N ? 4 DA N N ? 4 EA N N ? 4 FA N N ? 4 GA N N ? 4 IA N N ? 4 JA N N ? 4 KA N N ? 4 LA N N ? 4 MA N N ? 4 OA N N ? 4 PA N N ? 4 QA N N ? 4 RA N N ? 4 SA N N ? 4 TA N N ? 4 VA N N ? 4 WA N N ? 4 XA N N ? 4 YA N N ? 4 ZA N N ? 4 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 392 A GLU 392 1_555 X MG MG . A MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? metalc ? metalc2 J OE1 GLU 392 J GLU 392 1_555 NA MG MG . J MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc3 P OE1 GLU 392 P GLU 392 1_555 BB MG MG . P MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 288 n n S O2 SO4 doub 289 n n S O3 SO4 sing 290 n n S O4 SO4 sing 291 n n # _atom_sites.entry_id 5O7X _atom_sites.fract_transf_matrix[1][1] 0.009168 _atom_sites.fract_transf_matrix[1][2] -0.005299 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010583 _atom_sites.fract_transf_matrix[2][3] 0.000004 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002593 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 4 SO4 A 1 1001 1001 SO4 SO4 . T 4 SO4 A 1 1002 1002 SO4 SO4 . U 4 SO4 A 1 1003 1003 SO4 SO4 . V 4 SO4 A 1 1004 1004 SO4 SO4 . W 4 SO4 A 1 1005 1005 SO4 SO4 . X 5 MG A 1 1006 1006 MG MG . Y 4 SO4 D 1 1001 1001 SO4 SO4 . Z 4 SO4 D 1 1002 1002 SO4 SO4 . AA 4 SO4 D 1 1003 1003 SO4 SO4 . BA 4 SO4 D 1 1004 1005 SO4 SO4 . CA 5 MG D 1 1005 1006 MG MG . DA 4 SO4 F 1 601 1004 SO4 SO4 . EA 4 SO4 G 1 901 1002 SO4 SO4 . FA 4 SO4 G 1 902 1003 SO4 SO4 . GA 4 SO4 G 1 903 1005 SO4 SO4 . HA 5 MG G 1 904 1006 MG MG . IA 4 SO4 H 1 1001 1001 SO4 SO4 . JA 4 SO4 I 1 601 1004 SO4 SO4 . KA 4 SO4 J 1 1001 1001 SO4 SO4 . LA 4 SO4 J 1 1002 1003 SO4 SO4 . MA 4 SO4 J 1 1003 1005 SO4 SO4 . NA 5 MG J 1 1004 1006 MG MG . OA 4 SO4 K 1 601 1002 SO4 SO4 . PA 4 SO4 L 1 601 1004 SO4 SO4 . QA 4 SO4 M 1 1001 1001 SO4 SO4 . RA 4 SO4 M 1 1002 1002 SO4 SO4 . SA 4 SO4 M 1 1003 1003 SO4 SO4 . TA 4 SO4 M 1 1004 1005 SO4 SO4 . UA 5 MG M 1 1005 1006 MG MG . VA 4 SO4 O 1 601 1004 SO4 SO4 . WA 4 SO4 P 1 1001 1001 SO4 SO4 . XA 4 SO4 P 1 1002 1002 SO4 SO4 . YA 4 SO4 P 1 1003 1003 SO4 SO4 . ZA 4 SO4 P 1 1004 1004 SO4 SO4 . AB 4 SO4 P 1 1005 1005 SO4 SO4 . BB 5 MG P 1 1006 1006 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . Y 4 -34.369 1.856 67.125 1 108.59 ? S SO4 1001 D 1 HETATM 2 O O1 SO4 . . . Y 4 -34.231 0.583 66.402 1 106.46 ? O1 SO4 1001 D 1 HETATM 3 O O2 SO4 . . . Y 4 -35.045 2.842 66.273 1 110.51 ? O2 SO4 1001 D 1 HETATM 4 O O3 SO4 . . . Y 4 -33.051 2.375 67.472 1 111.15 ? O3 SO4 1001 D 1 HETATM 5 O O4 SO4 . . . Y 4 -35.116 1.678 68.369 1 94.87 ? O4 SO4 1001 D 1 # _model_server_stats.io_time_ms 131 _model_server_stats.parse_time_ms 56 _model_server_stats.create_model_time_ms 432 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 5 #