data_5O7X
#
_model_server_result.job_id            --MDJTB04GUlYz3xfKfJ-A 
_model_server_result.datetime_utc      '2025-01-05 01:46:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5o7x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"UA","auth_seq_id":1005}' 
#
_entry.id    5O7X 
#
_exptl.entry_id    5O7X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90.02 
_cell.angle_beta          90.01 
_cell.angle_gamma         59.98 
_cell.entry_id            5O7X 
_cell.length_a            109.07 
_cell.length_b            109.14 
_cell.length_c            385.64 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5O7X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 software_defined_assembly 1 
PISA trimeric 3 software_defined_assembly 2 
PISA trimeric 3 software_defined_assembly 3 
PISA trimeric 3 software_defined_assembly 4 
PISA trimeric 3 software_defined_assembly 5 
PISA trimeric 3 software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,S,T,U,V,W,X 1 1 
D,E,F,Y,Z,AA,BA,CA,DA 2 1 
G,H,I,EA,FA,GA,HA,IA,JA 3 1 
J,K,L,KA,LA,MA,NA,OA,PA 4 1 
M,N,O,QA,RA,SA,TA,UA,VA 5 1 
P,Q,R,WA,XA,YA,ZA,AB,BB 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 X N N 
? 5 CA N N 
? 5 HA N N 
? 5 NA N N 
? 5 UA N N 
? 5 BB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 392 A GLU 392 1_555 X MG MG . A MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? 
metalc ? metalc2 J OE1 GLU 392 J GLU 392 1_555 NA MG MG . J MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? 
metalc ? metalc3 P OE1 GLU 392 P GLU 392 1_555 BB MG MG . P MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5O7X 
_atom_sites.fract_transf_matrix[1][1]    0.009168 
_atom_sites.fract_transf_matrix[1][2]    -0.005299 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010583 
_atom_sites.fract_transf_matrix[2][3]    0.000004 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002593 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 4 SO4 A 1 1001 1001 SO4 SO4 . 
T 4 SO4 A 1 1002 1002 SO4 SO4 . 
U 4 SO4 A 1 1003 1003 SO4 SO4 . 
V 4 SO4 A 1 1004 1004 SO4 SO4 . 
W 4 SO4 A 1 1005 1005 SO4 SO4 . 
X 5 MG A 1 1006 1006 MG MG . 
Y 4 SO4 D 1 1001 1001 SO4 SO4 . 
Z 4 SO4 D 1 1002 1002 SO4 SO4 . 
AA 4 SO4 D 1 1003 1003 SO4 SO4 . 
BA 4 SO4 D 1 1004 1005 SO4 SO4 . 
CA 5 MG D 1 1005 1006 MG MG . 
DA 4 SO4 F 1 601 1004 SO4 SO4 . 
EA 4 SO4 G 1 901 1002 SO4 SO4 . 
FA 4 SO4 G 1 902 1003 SO4 SO4 . 
GA 4 SO4 G 1 903 1005 SO4 SO4 . 
HA 5 MG G 1 904 1006 MG MG . 
IA 4 SO4 H 1 1001 1001 SO4 SO4 . 
JA 4 SO4 I 1 601 1004 SO4 SO4 . 
KA 4 SO4 J 1 1001 1001 SO4 SO4 . 
LA 4 SO4 J 1 1002 1003 SO4 SO4 . 
MA 4 SO4 J 1 1003 1005 SO4 SO4 . 
NA 5 MG J 1 1004 1006 MG MG . 
OA 4 SO4 K 1 601 1002 SO4 SO4 . 
PA 4 SO4 L 1 601 1004 SO4 SO4 . 
QA 4 SO4 M 1 1001 1001 SO4 SO4 . 
RA 4 SO4 M 1 1002 1002 SO4 SO4 . 
SA 4 SO4 M 1 1003 1003 SO4 SO4 . 
TA 4 SO4 M 1 1004 1005 SO4 SO4 . 
UA 5 MG M 1 1005 1006 MG MG . 
VA 4 SO4 O 1 601 1004 SO4 SO4 . 
WA 4 SO4 P 1 1001 1001 SO4 SO4 . 
XA 4 SO4 P 1 1002 1002 SO4 SO4 . 
YA 4 SO4 P 1 1003 1003 SO4 SO4 . 
ZA 4 SO4 P 1 1004 1004 SO4 SO4 . 
AB 4 SO4 P 1 1005 1005 SO4 SO4 . 
BB 5 MG P 1 1006 1006 MG MG . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         UA 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               -47.416 
_atom_site.Cartn_y               89.06 
_atom_site.Cartn_z               -205.32 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        108.68 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           1005 
_atom_site.auth_asym_id          M 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              100 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    306 
_model_server_stats.query_time_ms           242 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#