data_5O83 # _model_server_result.job_id k5ILdzquQC5BJKPAL1LiHQ _model_server_result.datetime_utc '2025-03-04 14:47:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o83 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 5O83 # _exptl.entry_id 5O83 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.457 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Leniolisib _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.89 _cell.angle_gamma 90 _cell.entry_id 5O83 _cell.length_a 142.12 _cell.length_b 63.99 _cell.length_c 116.54 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O83 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H25 F3 N6 O2' _chem_comp.formula_weight 450.457 _chem_comp.id 9NQ _chem_comp.mon_nstd_flag . _chem_comp.name Leniolisib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C8 9NQ doub 1 n y N3 C9 9NQ sing 2 n y C8 N2 9NQ sing 3 n y C11 C10 9NQ sing 4 n n C11 N4 9NQ sing 5 n n C10 C9 9NQ sing 6 n n C9 C13 9NQ doub 7 n y N2 C7 9NQ doub 8 n y C13 C7 9NQ sing 9 n y C13 C12 9NQ sing 10 n n C7 N1 9NQ sing 11 n n N4 C12 9NQ sing 12 n n N4 C14 9NQ sing 13 n n C15 C14 9NQ doub 14 n y C15 N5 9NQ sing 15 n y N1 C5 9NQ sing 16 n n C5 C4 9NQ sing 17 n n C5 C6 9NQ sing 18 n n C14 C19 9NQ sing 19 n y N5 C16 9NQ doub 20 n y C4 C3 9NQ sing 21 n n C6 N 9NQ sing 22 n n C16 O1 9NQ sing 23 n n C16 C18 9NQ sing 24 n y C19 C18 9NQ doub 25 n y C17 O1 9NQ sing 26 n n C3 N 9NQ sing 27 n n C18 C20 9NQ sing 28 n n N C2 9NQ sing 29 n n C2 C1 9NQ sing 30 n n C2 O 9NQ doub 31 n n C20 F1 9NQ sing 32 n n C20 F 9NQ sing 33 n n C20 F2 9NQ sing 34 n n C1 C 9NQ sing 35 n n C1 H1 9NQ sing 36 n n C1 H2 9NQ sing 37 n n C3 H3 9NQ sing 38 n n C3 H4 9NQ sing 39 n n C11 H5 9NQ sing 40 n n C11 H6 9NQ sing 41 n n C12 H7 9NQ sing 42 n n C12 H8 9NQ sing 43 n n C15 H9 9NQ sing 44 n n C17 H10 9NQ sing 45 n n C17 H11 9NQ sing 46 n n C17 H12 9NQ sing 47 n n C19 H13 9NQ sing 48 n n C10 H14 9NQ sing 49 n n C10 H15 9NQ sing 50 n n C8 H16 9NQ sing 51 n n N1 H17 9NQ sing 52 n n C5 H18 9NQ sing 53 n n C4 H19 9NQ sing 54 n n C4 H20 9NQ sing 55 n n C6 H21 9NQ sing 56 n n C6 H22 9NQ sing 57 n n C H23 9NQ sing 58 n n C H24 9NQ sing 59 n n C H25 9NQ sing 60 n n # _atom_sites.entry_id 5O83 _atom_sites.fract_transf_matrix[1][1] 0.007036 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00161 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015627 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9NQ A 1 1101 1 9NQ LI1 . C 3 HOH A 1 1201 53 HOH HOH . C 3 HOH A 2 1202 52 HOH HOH . C 3 HOH A 3 1203 42 HOH HOH . C 3 HOH A 4 1204 1 HOH HOH . C 3 HOH A 5 1205 41 HOH HOH . C 3 HOH A 6 1206 55 HOH HOH . C 3 HOH A 7 1207 43 HOH HOH . C 3 HOH A 8 1208 46 HOH HOH . C 3 HOH A 9 1209 37 HOH HOH . C 3 HOH A 10 1210 31 HOH HOH . C 3 HOH A 11 1211 17 HOH HOH . C 3 HOH A 12 1212 18 HOH HOH . C 3 HOH A 13 1213 40 HOH HOH . C 3 HOH A 14 1214 13 HOH HOH . C 3 HOH A 15 1215 54 HOH HOH . C 3 HOH A 16 1216 45 HOH HOH . C 3 HOH A 17 1217 27 HOH HOH . C 3 HOH A 18 1218 29 HOH HOH . C 3 HOH A 19 1219 48 HOH HOH . C 3 HOH A 20 1220 19 HOH HOH . C 3 HOH A 21 1221 7 HOH HOH . C 3 HOH A 22 1222 16 HOH HOH . C 3 HOH A 23 1223 49 HOH HOH . C 3 HOH A 24 1224 26 HOH HOH . C 3 HOH A 25 1225 33 HOH HOH . C 3 HOH A 26 1226 47 HOH HOH . C 3 HOH A 27 1227 3 HOH HOH . C 3 HOH A 28 1228 51 HOH HOH . C 3 HOH A 29 1229 12 HOH HOH . C 3 HOH A 30 1230 44 HOH HOH . C 3 HOH A 31 1231 2 HOH HOH . C 3 HOH A 32 1232 50 HOH HOH . C 3 HOH A 33 1233 10 HOH HOH . C 3 HOH A 34 1234 20 HOH HOH . C 3 HOH A 35 1235 38 HOH HOH . C 3 HOH A 36 1236 28 HOH HOH . C 3 HOH A 37 1237 36 HOH HOH . C 3 HOH A 38 1238 23 HOH HOH . C 3 HOH A 39 1239 32 HOH HOH . C 3 HOH A 40 1240 34 HOH HOH . C 3 HOH A 41 1241 4 HOH HOH . C 3 HOH A 42 1242 25 HOH HOH . C 3 HOH A 43 1243 24 HOH HOH . C 3 HOH A 44 1244 21 HOH HOH . C 3 HOH A 45 1245 9 HOH HOH . C 3 HOH A 46 1246 15 HOH HOH . C 3 HOH A 47 1247 22 HOH HOH . C 3 HOH A 48 1248 8 HOH HOH . C 3 HOH A 49 1249 30 HOH HOH . C 3 HOH A 50 1250 6 HOH HOH . C 3 HOH A 51 1251 14 HOH HOH . C 3 HOH A 52 1252 35 HOH HOH . C 3 HOH A 53 1253 5 HOH HOH . C 3 HOH A 54 1254 11 HOH HOH . C 3 HOH A 55 1255 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9NQ . . . B 2 2.021 -33.97 -20.493 1 31.37 ? C1 9NQ 1101 A 1 HETATM 2 C C2 9NQ . . . B 2 3.377 -34.623 -20.664 1 33.29 ? C2 9NQ 1101 A 1 HETATM 3 C C3 9NQ . . . B 2 5.226 -35.284 -22.16 1 30.64 ? C3 9NQ 1101 A 1 HETATM 4 O O1 9NQ . . . B 2 13.235 -29.554 -22.022 1 40.83 ? O1 9NQ 1101 A 1 HETATM 5 C C11 9NQ . . . B 2 8.275 -29.111 -25.877 1 34.5 ? C11 9NQ 1101 A 1 HETATM 6 C C12 9NQ . . . B 2 7.64 -31.121 -24.434 1 33.5 ? C12 9NQ 1101 A 1 HETATM 7 C C13 9NQ . . . B 2 6.236 -30.891 -24.943 1 33.12 ? C13 9NQ 1101 A 1 HETATM 8 C C14 9NQ . . . B 2 9.726 -29.836 -24.027 1 33.4 ? C14 9NQ 1101 A 1 HETATM 9 C C15 9NQ . . . B 2 10.882 -29.376 -24.654 1 34.72 ? C15 9NQ 1101 A 1 HETATM 10 C C16 9NQ . . . B 2 12.094 -29.613 -22.741 1 38.45 ? C16 9NQ 1101 A 1 HETATM 11 C C17 9NQ . . . B 2 14.395 -29.02 -22.658 1 42.23 ? C17 9NQ 1101 A 1 HETATM 12 C C18 9NQ . . . B 2 11 -30.068 -21.989 1 39.85 ? C18 9NQ 1101 A 1 HETATM 13 C C19 9NQ . . . B 2 9.798 -30.185 -22.678 1 36.52 ? C19 9NQ 1101 A 1 HETATM 14 C C20 9NQ . . . B 2 10.983 -30.355 -20.512 1 43.87 ? C20 9NQ 1101 A 1 HETATM 15 F F2 9NQ . . . B 2 11.708 -29.488 -19.824 1 44.55 ? F2 9NQ 1101 A 1 HETATM 16 F F 9NQ . . . B 2 9.765 -30.279 -19.984 1 45.1 ? F 9NQ 1101 A 1 HETATM 17 F F1 9NQ . . . B 2 11.455 -31.564 -20.222 1 45.04 ? F1 9NQ 1101 A 1 HETATM 18 N N5 9NQ . . . B 2 12.057 -29.27 -24.019 1 36.48 ? N5 9NQ 1101 A 1 HETATM 19 N N4 9NQ . . . B 2 8.554 -30.005 -24.746 1 32.66 ? N4 9NQ 1101 A 1 HETATM 20 C C10 9NQ . . . B 2 6.851 -28.598 -25.825 1 34.41 ? C10 9NQ 1101 A 1 HETATM 21 C C9 9NQ . . . B 2 5.872 -29.723 -25.633 1 34.43 ? C9 9NQ 1101 A 1 HETATM 22 N N3 9NQ . . . B 2 4.652 -29.532 -26.16 1 35.69 ? N3 9NQ 1101 A 1 HETATM 23 C C8 9NQ . . . B 2 3.772 -30.52 -25.977 1 34.66 ? C8 9NQ 1101 A 1 HETATM 24 N N2 9NQ . . . B 2 3.953 -31.686 -25.351 1 33.85 ? N2 9NQ 1101 A 1 HETATM 25 C C7 9NQ . . . B 2 5.194 -31.874 -24.845 1 32.95 ? C7 9NQ 1101 A 1 HETATM 26 N N1 9NQ . . . B 2 5.46 -33.079 -24.277 1 31.67 ? N1 9NQ 1101 A 1 HETATM 27 C C5 9NQ . . . B 2 4.522 -34.195 -24.14 1 31.13 ? C5 9NQ 1101 A 1 HETATM 28 C C4 9NQ . . . B 2 5.226 -35.448 -23.669 1 30.97 ? C4 9NQ 1101 A 1 HETATM 29 C C6 9NQ . . . B 2 3.409 -34.011 -23.113 1 31.02 ? C6 9NQ 1101 A 1 HETATM 30 N N 9NQ . . . B 2 3.937 -34.636 -21.896 1 31.7 ? N 9NQ 1101 A 1 HETATM 31 O O 9NQ . . . B 2 3.946 -35.11 -19.698 1 35.9 ? O 9NQ 1101 A 1 HETATM 32 C C 9NQ . . . B 2 1.849 -33.319 -19.157 1 31.56 ? C 9NQ 1101 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #