data_5O84 # _model_server_result.job_id fTuT2OHMs7956Iv-FepyQA _model_server_result.datetime_utc '2025-02-05 07:53:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o84 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 5O84 # _exptl.entry_id 5O84 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.47 _cell.angle_gamma 90 _cell.entry_id 5O84 _cell.length_a 85.165 _cell.length_b 50.74 _cell.length_c 57.167 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O84 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -21.849207 0 52.826869 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 11 A SER 13 1_555 A N OMT 12 A OMT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale2 A C OMT 12 A OMT 14 1_555 A N TYR 13 A TYR 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale3 A C GLN 44 A GLN 46 1_555 A N MHO 45 A MHO 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MHO 45 A MHO 47 1_555 A N ASN 46 A ASN 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C ILE 62 A ILE 64 1_555 A N OCS 63 A OCS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C OCS 63 A OCS 65 1_555 A N GLU 64 A GLU 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale7 A C PRO 107 A PRO 109 1_555 A N CSO 108 A CSO 110 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C PRO 107 A PRO 109 1_555 A N CSO 108 A CSO 110 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.327 ? covale ? covale9 A C CSO 108 A CSO 110 1_555 A N LYS 109 A LYS 111 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 A C CSO 108 A CSO 110 1_555 A N LYS 109 A LYS 111 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 E MG MG . A MG 304 1_555 J O HOH . A HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc2 E MG MG . A MG 304 1_555 J O HOH . A HOH 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc3 E MG MG . A MG 304 1_555 J O HOH . A HOH 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc4 E MG MG . A MG 304 1_555 J O HOH . A HOH 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc5 E MG MG . A MG 304 1_555 J O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc6 E MG MG . A MG 304 1_555 J O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 103 n n C1 C2 EDO sing 104 n n C1 H11 EDO sing 105 n n C1 H12 EDO sing 106 n n O1 HO1 EDO sing 107 n n C2 O2 EDO sing 108 n n C2 H21 EDO sing 109 n n C2 H22 EDO sing 110 n n O2 HO2 EDO sing 111 n n # _atom_sites.entry_id 5O84 _atom_sites.fract_transf_matrix[1][1] 0.011742 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004857 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01893 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMT A 1 301 1 FMT FMT . C 3 EDO A 1 302 2 EDO EDO . D 4 ACT A 1 303 3 ACT ACT . E 5 MG A 1 304 4 MG MG . F 6 GOL A 1 305 5 GOL GOL . G 3 EDO A 1 306 7 EDO EDO . H 3 EDO A 1 307 8 EDO EDO . I 4 ACT A 1 308 9 ACT ACT . J 7 HOH A 1 401 118 HOH HOH . J 7 HOH A 2 402 77 HOH HOH . J 7 HOH A 3 403 30 HOH HOH . J 7 HOH A 4 404 6 HOH HOH . J 7 HOH A 5 405 82 HOH HOH . J 7 HOH A 6 406 4 HOH HOH . J 7 HOH A 7 407 121 HOH HOH . J 7 HOH A 8 408 108 HOH HOH . J 7 HOH A 9 409 115 HOH HOH . J 7 HOH A 10 410 72 HOH HOH . J 7 HOH A 11 411 61 HOH HOH . J 7 HOH A 12 412 24 HOH HOH . J 7 HOH A 13 413 22 HOH HOH . J 7 HOH A 14 414 12 HOH HOH . J 7 HOH A 15 415 11 HOH HOH . J 7 HOH A 16 416 80 HOH HOH . J 7 HOH A 17 417 55 HOH HOH . J 7 HOH A 18 418 114 HOH HOH . J 7 HOH A 19 419 10 HOH HOH . J 7 HOH A 20 420 8 HOH HOH . J 7 HOH A 21 421 51 HOH HOH . J 7 HOH A 22 422 113 HOH HOH . J 7 HOH A 23 423 120 HOH HOH . J 7 HOH A 24 424 2 HOH HOH . J 7 HOH A 25 425 34 HOH HOH . J 7 HOH A 26 426 116 HOH HOH . J 7 HOH A 27 427 48 HOH HOH . J 7 HOH A 28 428 27 HOH HOH . J 7 HOH A 29 429 101 HOH HOH . J 7 HOH A 30 430 47 HOH HOH . J 7 HOH A 31 431 17 HOH HOH . J 7 HOH A 32 432 14 HOH HOH . J 7 HOH A 33 433 15 HOH HOH . J 7 HOH A 34 434 122 HOH HOH . J 7 HOH A 35 435 56 HOH HOH . J 7 HOH A 36 436 13 HOH HOH . J 7 HOH A 37 437 3 HOH HOH . J 7 HOH A 38 438 25 HOH HOH . J 7 HOH A 39 439 9 HOH HOH . J 7 HOH A 40 440 44 HOH HOH . J 7 HOH A 41 441 109 HOH HOH . J 7 HOH A 42 442 110 HOH HOH . J 7 HOH A 43 443 54 HOH HOH . J 7 HOH A 44 444 102 HOH HOH . J 7 HOH A 45 445 23 HOH HOH . J 7 HOH A 46 446 57 HOH HOH . J 7 HOH A 47 447 37 HOH HOH . J 7 HOH A 48 448 31 HOH HOH . J 7 HOH A 49 449 7 HOH HOH . J 7 HOH A 50 450 112 HOH HOH . J 7 HOH A 51 451 42 HOH HOH . J 7 HOH A 52 452 65 HOH HOH . J 7 HOH A 53 453 58 HOH HOH . J 7 HOH A 54 454 21 HOH HOH . J 7 HOH A 55 455 53 HOH HOH . J 7 HOH A 56 456 29 HOH HOH . J 7 HOH A 57 457 20 HOH HOH . J 7 HOH A 58 458 50 HOH HOH . J 7 HOH A 59 459 70 HOH HOH . J 7 HOH A 60 460 35 HOH HOH . J 7 HOH A 61 461 87 HOH HOH . J 7 HOH A 62 462 1 HOH HOH . J 7 HOH A 63 463 46 HOH HOH . J 7 HOH A 64 464 76 HOH HOH . J 7 HOH A 65 465 111 HOH HOH . J 7 HOH A 66 466 96 HOH HOH . J 7 HOH A 67 467 105 HOH HOH . J 7 HOH A 68 468 75 HOH HOH . J 7 HOH A 69 469 36 HOH HOH . J 7 HOH A 70 470 97 HOH HOH . J 7 HOH A 71 471 38 HOH HOH . J 7 HOH A 72 472 41 HOH HOH . J 7 HOH A 73 473 18 HOH HOH . J 7 HOH A 74 474 64 HOH HOH . J 7 HOH A 75 475 104 HOH HOH . J 7 HOH A 76 476 19 HOH HOH . J 7 HOH A 77 477 83 HOH HOH . J 7 HOH A 78 478 5 HOH HOH . J 7 HOH A 79 479 26 HOH HOH . J 7 HOH A 80 480 16 HOH HOH . J 7 HOH A 81 481 107 HOH HOH . J 7 HOH A 82 482 60 HOH HOH . J 7 HOH A 83 483 52 HOH HOH . J 7 HOH A 84 484 63 HOH HOH . J 7 HOH A 85 485 62 HOH HOH . J 7 HOH A 86 486 93 HOH HOH . J 7 HOH A 87 487 78 HOH HOH . J 7 HOH A 88 488 28 HOH HOH . J 7 HOH A 89 489 89 HOH HOH . J 7 HOH A 90 490 90 HOH HOH . J 7 HOH A 91 491 74 HOH HOH . J 7 HOH A 92 492 69 HOH HOH . J 7 HOH A 93 493 84 HOH HOH . J 7 HOH A 94 494 92 HOH HOH . J 7 HOH A 95 495 100 HOH HOH . J 7 HOH A 96 496 32 HOH HOH . J 7 HOH A 97 497 117 HOH HOH . J 7 HOH A 98 498 88 HOH HOH . J 7 HOH A 99 499 59 HOH HOH . J 7 HOH A 100 500 94 HOH HOH . J 7 HOH A 101 501 73 HOH HOH . J 7 HOH A 102 502 79 HOH HOH . J 7 HOH A 103 503 86 HOH HOH . J 7 HOH A 104 504 67 HOH HOH . J 7 HOH A 105 505 81 HOH HOH . J 7 HOH A 106 506 71 HOH HOH . J 7 HOH A 107 507 40 HOH HOH . J 7 HOH A 108 508 39 HOH HOH . J 7 HOH A 109 509 43 HOH HOH . J 7 HOH A 110 510 49 HOH HOH . J 7 HOH A 111 511 33 HOH HOH . J 7 HOH A 112 512 66 HOH HOH . J 7 HOH A 113 513 103 HOH HOH . J 7 HOH A 114 514 68 HOH HOH . J 7 HOH A 115 515 119 HOH HOH . J 7 HOH A 116 516 95 HOH HOH . J 7 HOH A 117 517 106 HOH HOH . J 7 HOH A 118 518 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . B . G 3 4.209 20.77 25.984 0.45 46.47 ? C1 EDO 306 A 1 HETATM 2 O O1 EDO . B . G 3 5.099 20.118 26.849 0.45 47.03 ? O1 EDO 306 A 1 HETATM 3 C C2 EDO . B . G 3 3.048 21.349 26.79 0.45 46.23 ? C2 EDO 306 A 1 HETATM 4 O O2 EDO . B . G 3 2.308 22.224 25.983 0.45 46.77 ? O2 EDO 306 A 1 HETATM 5 H H11 EDO . B . G 3 3.867 20.136 25.334 0.45 55.76 ? H11 EDO 306 A 1 HETATM 6 H H12 EDO . B . G 3 4.672 21.487 25.523 0.45 55.76 ? H12 EDO 306 A 1 HETATM 7 H HO1 EDO . B . G 3 4.748 20.053 27.62 0.45 56.44 ? HO1 EDO 306 A 1 HETATM 8 H H21 EDO . B . G 3 3.395 21.832 27.556 0.45 55.48 ? H21 EDO 306 A 1 HETATM 9 H H22 EDO . B . G 3 2.475 20.628 27.095 0.45 55.48 ? H22 EDO 306 A 1 HETATM 10 H HO2 EDO . B . G 3 1.919 21.783 25.369 0.45 56.13 ? HO2 EDO 306 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #