data_5O8N
#
_model_server_result.job_id            UeTBnkuy4yoStvP5YwS-9Q 
_model_server_result.datetime_utc      '2024-11-01 02:35:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5o8n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":411}' 
#
_entry.id    5O8N 
#
_exptl.entry_id    5O8N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5O8N 
_cell.length_a            93.552 
_cell.length_b            93.552 
_cell.length_c            129.753 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5O8N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 57 A ASP 57 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? 
metalc ? metalc2 A OD2 ASP 57 A ASP 57 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc3 A OD1 ASP 59 A ASP 59 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc4 A O GLN 61 A GLN 61 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc5 A OD2 ASP 138 A ASP 138 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc6 A NE2 HIS 146 A HIS 146 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc7 A OE1 GLU 166 A GLU 166 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? 
metalc ? metalc8 A OE1 GLU 177 A GLU 177 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? 
metalc ? metalc9 A OE2 GLU 177 A GLU 177 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? 
metalc ? metalc10 A OE2 GLU 177 A GLU 177 1_555 N CA CA . A CA 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.198 ? 
metalc ? metalc11 A O ASN 183 A ASN 183 1_555 N CA CA . A CA 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? 
metalc ? metalc12 A OD1 ASP 185 A ASP 185 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? 
metalc ? metalc13 A OD2 ASP 185 A ASP 185 1_555 N CA CA . A CA 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.065 ? 
metalc ? metalc14 A O GLU 187 A GLU 187 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc15 A OE1 GLU 190 A GLU 190 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? 
metalc ? metalc16 A OE2 GLU 190 A GLU 190 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
metalc ? metalc17 A OE2 GLU 190 A GLU 190 1_555 N CA CA . A CA 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? 
metalc ? metalc18 A O TYR 193 A TYR 193 1_555 M CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc19 A O THR 194 A THR 194 1_555 M CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc20 A OG1 THR 194 A THR 194 1_555 M CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc21 A O ILE 197 A ILE 197 1_555 M CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc22 A OD1 ASP 200 A ASP 200 1_555 M CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? 
metalc ? metalc23 B CA CA . A CA 401 1_555 O O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc24 C CA CA . A CA 402 1_555 O O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? 
metalc ? metalc25 C CA CA . A CA 402 1_555 O O HOH . A HOH 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc26 C CA CA . A CA 402 1_555 O O HOH . A HOH 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc27 J NA NA . A NA 409 1_555 O O HOH . A HOH 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.006 ? 
metalc ? metalc28 L NA NA . A NA 411 1_555 O O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc29 L NA NA . A NA 411 1_555 O O HOH . A HOH 557 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc30 M CA CA . A CA 412 1_555 O O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? 
metalc ? metalc31 M CA CA . A CA 412 1_555 O O HOH . A HOH 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5O8N 
_atom_sites.fract_transf_matrix[1][1]    0.010689 
_atom_sites.fract_transf_matrix[1][2]    0.006171 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012343 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007707 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 401 401 CA CA . 
C 2 CA A 1 402 403 CA CA . 
D 3 ZN A 1 403 1 ZN ZN . 
E 4 CL A 1 404 1 CL CL . 
F 4 CL A 1 405 3 CL CL . 
G 4 CL A 1 406 6 CL CL . 
H 5 NA A 1 407 1 NA NA . 
I 5 NA A 1 408 2 NA NA . 
J 5 NA A 1 409 3 NA NA . 
K 5 NA A 1 410 4 NA NA . 
L 5 NA A 1 411 5 NA NA . 
M 2 CA A 1 412 1 CA CA . 
N 2 CA A 1 413 2 CA CA . 
O 6 HOH A 1 501 78 HOH HOH . 
O 6 HOH A 2 502 65 HOH HOH . 
O 6 HOH A 3 503 58 HOH HOH . 
O 6 HOH A 4 504 15 HOH HOH . 
O 6 HOH A 5 505 91 HOH HOH . 
O 6 HOH A 6 506 12 HOH HOH . 
O 6 HOH A 7 507 47 HOH HOH . 
O 6 HOH A 8 508 70 HOH HOH . 
O 6 HOH A 9 509 3 HOH HOH . 
O 6 HOH A 10 510 4 HOH HOH . 
O 6 HOH A 11 511 11 HOH HOH . 
O 6 HOH A 12 512 20 HOH HOH . 
O 6 HOH A 13 513 19 HOH HOH . 
O 6 HOH A 14 514 45 HOH HOH . 
O 6 HOH A 15 515 94 HOH HOH . 
O 6 HOH A 16 516 10 HOH HOH . 
O 6 HOH A 17 517 31 HOH HOH . 
O 6 HOH A 18 518 5 HOH HOH . 
O 6 HOH A 19 519 73 HOH HOH . 
O 6 HOH A 20 520 34 HOH HOH . 
O 6 HOH A 21 521 23 HOH HOH . 
O 6 HOH A 22 522 28 HOH HOH . 
O 6 HOH A 23 523 108 HOH HOH . 
O 6 HOH A 24 524 2 HOH HOH . 
O 6 HOH A 25 525 16 HOH HOH . 
O 6 HOH A 26 526 82 HOH HOH . 
O 6 HOH A 27 527 7 HOH HOH . 
O 6 HOH A 28 528 18 HOH HOH . 
O 6 HOH A 29 529 42 HOH HOH . 
O 6 HOH A 30 530 81 HOH HOH . 
O 6 HOH A 31 531 75 HOH HOH . 
O 6 HOH A 32 532 98 HOH HOH . 
O 6 HOH A 33 533 29 HOH HOH . 
O 6 HOH A 34 534 46 HOH HOH . 
O 6 HOH A 35 535 26 HOH HOH . 
O 6 HOH A 36 536 40 HOH HOH . 
O 6 HOH A 37 537 109 HOH HOH . 
O 6 HOH A 38 538 33 HOH HOH . 
O 6 HOH A 39 539 1 HOH HOH . 
O 6 HOH A 40 540 25 HOH HOH . 
O 6 HOH A 41 541 17 HOH HOH . 
O 6 HOH A 42 542 49 HOH HOH . 
O 6 HOH A 43 543 6 HOH HOH . 
O 6 HOH A 44 544 66 HOH HOH . 
O 6 HOH A 45 545 43 HOH HOH . 
O 6 HOH A 46 546 51 HOH HOH . 
O 6 HOH A 47 547 36 HOH HOH . 
O 6 HOH A 48 548 21 HOH HOH . 
O 6 HOH A 49 549 76 HOH HOH . 
O 6 HOH A 50 550 32 HOH HOH . 
O 6 HOH A 51 551 38 HOH HOH . 
O 6 HOH A 52 552 80 HOH HOH . 
O 6 HOH A 53 553 99 HOH HOH . 
O 6 HOH A 54 554 30 HOH HOH . 
O 6 HOH A 55 555 14 HOH HOH . 
O 6 HOH A 56 556 69 HOH HOH . 
O 6 HOH A 57 557 37 HOH HOH . 
O 6 HOH A 58 558 71 HOH HOH . 
O 6 HOH A 59 559 54 HOH HOH . 
O 6 HOH A 60 560 8 HOH HOH . 
O 6 HOH A 61 561 35 HOH HOH . 
O 6 HOH A 62 562 100 HOH HOH . 
O 6 HOH A 63 563 13 HOH HOH . 
O 6 HOH A 64 564 22 HOH HOH . 
O 6 HOH A 65 565 9 HOH HOH . 
O 6 HOH A 66 566 56 HOH HOH . 
O 6 HOH A 67 567 60 HOH HOH . 
O 6 HOH A 68 568 44 HOH HOH . 
O 6 HOH A 69 569 97 HOH HOH . 
O 6 HOH A 70 570 24 HOH HOH . 
O 6 HOH A 71 571 102 HOH HOH . 
O 6 HOH A 72 572 57 HOH HOH . 
O 6 HOH A 73 573 50 HOH HOH . 
O 6 HOH A 74 574 67 HOH HOH . 
O 6 HOH A 75 575 64 HOH HOH . 
O 6 HOH A 76 576 93 HOH HOH . 
O 6 HOH A 77 577 27 HOH HOH . 
O 6 HOH A 78 578 101 HOH HOH . 
O 6 HOH A 79 579 95 HOH HOH . 
O 6 HOH A 80 580 77 HOH HOH . 
O 6 HOH A 81 581 87 HOH HOH . 
O 6 HOH A 82 582 59 HOH HOH . 
O 6 HOH A 83 583 52 HOH HOH . 
O 6 HOH A 84 584 39 HOH HOH . 
O 6 HOH A 85 585 89 HOH HOH . 
O 6 HOH A 86 586 55 HOH HOH . 
O 6 HOH A 87 587 104 HOH HOH . 
O 6 HOH A 88 588 79 HOH HOH . 
O 6 HOH A 89 589 68 HOH HOH . 
O 6 HOH A 90 590 74 HOH HOH . 
O 6 HOH A 91 591 53 HOH HOH . 
O 6 HOH A 92 592 41 HOH HOH . 
O 6 HOH A 93 593 61 HOH HOH . 
O 6 HOH A 94 594 48 HOH HOH . 
O 6 HOH A 95 595 110 HOH HOH . 
O 6 HOH A 96 596 106 HOH HOH . 
O 6 HOH A 97 597 103 HOH HOH . 
O 6 HOH A 98 598 63 HOH HOH . 
O 6 HOH A 99 599 84 HOH HOH . 
O 6 HOH A 100 600 105 HOH HOH . 
O 6 HOH A 101 601 111 HOH HOH . 
O 6 HOH A 102 602 107 HOH HOH . 
O 6 HOH A 103 603 90 HOH HOH . 
O 6 HOH A 104 604 62 HOH HOH . 
O 6 HOH A 105 605 83 HOH HOH . 
O 6 HOH A 106 606 72 HOH HOH . 
O 6 HOH A 107 607 85 HOH HOH . 
O 6 HOH A 108 608 96 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         L 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               -4.504 
_atom_site.Cartn_y               -7.8 
_atom_site.Cartn_z               21.625 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        85.18 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           411 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#