data_5O8R # _model_server_result.job_id pF97X-Gd9EA7tVI4DDkzsw _model_server_result.datetime_utc '2024-12-04 17:38:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o8r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 5O8R # _exptl.entry_id 5O8R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5O8R _cell.length_a 163.937 _cell.length_b 163.937 _cell.length_c 166.73 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O8R _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1,4 B,E,F,H 1 2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_554 y+1/2,-x+1/2,z-1/4 0 1 0 -1 0 0 0 0 1 81.9685 81.9685 -41.6825 3 'crystal symmetry operation' 6_555 x+1/2,-y+1/2,-z+3/4 1 0 0 0 -1 0 0 0 -1 81.9685 81.9685 125.0475 4 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 163.937 163.937 83.365 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 5O8R _atom_sites.fract_transf_matrix[1][1] 0.0061 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0061 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005998 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 501 1 FAD FAD . D 3 NAP A 1 502 2 NAP NAP . E 2 FAD B 1 501 1 FAD FAD . F 3 NAP B 1 502 2 NAP NAP . G 4 HOH A 1 601 71 HOH HOH . G 4 HOH A 2 602 50 HOH HOH . G 4 HOH A 3 603 29 HOH HOH . G 4 HOH A 4 604 20 HOH HOH . G 4 HOH A 5 605 57 HOH HOH . G 4 HOH A 6 606 15 HOH HOH . G 4 HOH A 7 607 52 HOH HOH . G 4 HOH A 8 608 59 HOH HOH . G 4 HOH A 9 609 10 HOH HOH . G 4 HOH A 10 610 40 HOH HOH . G 4 HOH A 11 611 55 HOH HOH . G 4 HOH A 12 612 33 HOH HOH . G 4 HOH A 13 613 14 HOH HOH . G 4 HOH A 14 614 68 HOH HOH . G 4 HOH A 15 615 22 HOH HOH . G 4 HOH A 16 616 53 HOH HOH . G 4 HOH A 17 617 4 HOH HOH . G 4 HOH A 18 618 58 HOH HOH . G 4 HOH A 19 619 9 HOH HOH . G 4 HOH A 20 620 69 HOH HOH . G 4 HOH A 21 621 77 HOH HOH . G 4 HOH A 22 622 45 HOH HOH . G 4 HOH A 23 623 17 HOH HOH . G 4 HOH A 24 624 27 HOH HOH . G 4 HOH A 25 625 90 HOH HOH . G 4 HOH A 26 626 25 HOH HOH . G 4 HOH A 27 627 46 HOH HOH . G 4 HOH A 28 628 26 HOH HOH . G 4 HOH A 29 629 8 HOH HOH . G 4 HOH A 30 630 78 HOH HOH . G 4 HOH A 31 631 18 HOH HOH . G 4 HOH A 32 632 79 HOH HOH . G 4 HOH A 33 633 5 HOH HOH . G 4 HOH A 34 634 80 HOH HOH . G 4 HOH A 35 635 24 HOH HOH . G 4 HOH A 36 636 94 HOH HOH . G 4 HOH A 37 637 87 HOH HOH . G 4 HOH A 38 638 6 HOH HOH . G 4 HOH A 39 639 11 HOH HOH . G 4 HOH A 40 640 31 HOH HOH . G 4 HOH A 41 641 44 HOH HOH . G 4 HOH A 42 642 89 HOH HOH . G 4 HOH A 43 643 43 HOH HOH . H 4 HOH B 1 601 60 HOH HOH . H 4 HOH B 2 602 92 HOH HOH . H 4 HOH B 3 603 37 HOH HOH . H 4 HOH B 4 604 39 HOH HOH . H 4 HOH B 5 605 81 HOH HOH . H 4 HOH B 6 606 38 HOH HOH . H 4 HOH B 7 607 97 HOH HOH . H 4 HOH B 8 608 47 HOH HOH . H 4 HOH B 9 609 56 HOH HOH . H 4 HOH B 10 610 48 HOH HOH . H 4 HOH B 11 611 54 HOH HOH . H 4 HOH B 12 612 35 HOH HOH . H 4 HOH B 13 613 34 HOH HOH . H 4 HOH B 14 614 36 HOH HOH . H 4 HOH B 15 615 96 HOH HOH . H 4 HOH B 16 616 49 HOH HOH . H 4 HOH B 17 617 91 HOH HOH . H 4 HOH B 18 618 19 HOH HOH . H 4 HOH B 19 619 12 HOH HOH . H 4 HOH B 20 620 21 HOH HOH . H 4 HOH B 21 621 93 HOH HOH . H 4 HOH B 22 622 85 HOH HOH . H 4 HOH B 23 623 41 HOH HOH . H 4 HOH B 24 624 51 HOH HOH . H 4 HOH B 25 625 72 HOH HOH . H 4 HOH B 26 626 16 HOH HOH . H 4 HOH B 27 627 95 HOH HOH . H 4 HOH B 28 628 23 HOH HOH . H 4 HOH B 29 629 7 HOH HOH . H 4 HOH B 30 630 66 HOH HOH . H 4 HOH B 31 631 30 HOH HOH . H 4 HOH B 32 632 13 HOH HOH . H 4 HOH B 33 633 84 HOH HOH . H 4 HOH B 34 634 32 HOH HOH . H 4 HOH B 35 635 42 HOH HOH . H 4 HOH B 36 636 2 HOH HOH . H 4 HOH B 37 637 3 HOH HOH . H 4 HOH B 38 638 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 2 81.443 50.291 64.119 0.9 60.72 ? PA FAD 501 B 1 HETATM 2 O O1A FAD . . . E 2 81.226 50.649 65.595 0.9 53.11 ? O1A FAD 501 B 1 HETATM 3 O O2A FAD . . . E 2 81.61 51.43 63.129 0.9 58.79 ? O2A FAD 501 B 1 HETATM 4 O O5B FAD . . . E 2 82.723 49.288 64.092 0.9 70.74 ? O5B FAD 501 B 1 HETATM 5 C C5B FAD . . . E 2 83.707 49.292 63.028 0.9 72.33 ? C5B FAD 501 B 1 HETATM 6 C C4B FAD . . . E 2 85.14 49.519 63.511 0.9 67.16 ? C4B FAD 501 B 1 HETATM 7 O O4B FAD . . . E 2 86.034 49.076 62.502 0.9 62.21 ? O4B FAD 501 B 1 HETATM 8 C C3B FAD . . . E 2 85.522 50.996 63.759 0.9 66.95 ? C3B FAD 501 B 1 HETATM 9 O O3B FAD . . . E 2 86.396 50.846 64.892 0.9 58.75 ? O3B FAD 501 B 1 HETATM 10 C C2B FAD . . . E 2 86.102 51.575 62.428 0.9 62.14 ? C2B FAD 501 B 1 HETATM 11 O O2B FAD . . . E 2 86.736 52.933 62.461 0.9 41.93 ? O2B FAD 501 B 1 HETATM 12 C C1B FAD . . . E 2 86.847 50.218 62.111 0.9 63.74 ? C1B FAD 501 B 1 HETATM 13 N N9A FAD . . . E 2 87.318 49.957 60.718 0.9 65.28 ? N9A FAD 501 B 1 HETATM 14 C C8A FAD . . . E 2 86.792 50.351 59.534 0.9 59.71 ? C8A FAD 501 B 1 HETATM 15 N N7A FAD . . . E 2 87.575 49.903 58.522 0.9 54.79 ? N7A FAD 501 B 1 HETATM 16 C C5A FAD . . . E 2 88.599 49.227 59.048 0.9 56.71 ? C5A FAD 501 B 1 HETATM 17 C C6A FAD . . . E 2 89.799 48.547 58.563 0.9 61.74 ? C6A FAD 501 B 1 HETATM 18 N N6A FAD . . . E 2 90.067 48.455 57.269 0.9 68.92 ? N6A FAD 501 B 1 HETATM 19 N N1A FAD . . . E 2 90.63 47.971 59.439 0.9 68.37 ? N1A FAD 501 B 1 HETATM 20 C C2A FAD . . . E 2 90.416 48.003 60.759 0.9 62.41 ? C2A FAD 501 B 1 HETATM 21 N N3A FAD . . . E 2 89.36 48.631 61.293 0.9 59 ? N3A FAD 501 B 1 HETATM 22 C C4A FAD . . . E 2 88.435 49.248 60.497 0.9 61.42 ? C4A FAD 501 B 1 HETATM 23 N N1 FAD . . . E 2 71.311 49.812 67.585 0.9 150.09 ? N1 FAD 501 B 1 HETATM 24 C C2 FAD . . . E 2 70.611 49.338 68.673 0.9 140.81 ? C2 FAD 501 B 1 HETATM 25 O O2 FAD . . . E 2 70.077 48.207 68.597 0.9 117.98 ? O2 FAD 501 B 1 HETATM 26 N N3 FAD . . . E 2 70.478 50.033 69.833 0.9 138.9 ? N3 FAD 501 B 1 HETATM 27 C C4 FAD . . . E 2 71.025 51.258 69.995 0.9 138.94 ? C4 FAD 501 B 1 HETATM 28 O O4 FAD . . . E 2 70.865 51.87 71.075 0.9 109.53 ? O4 FAD 501 B 1 HETATM 29 C C4X FAD . . . E 2 71.809 51.859 68.863 0.9 144.61 ? C4X FAD 501 B 1 HETATM 30 N N5 FAD . . . E 2 72.4 53.082 68.985 0.9 132.48 ? N5 FAD 501 B 1 HETATM 31 C C5X FAD . . . E 2 73.102 53.617 67.931 0.9 169.57 ? C5X FAD 501 B 1 HETATM 32 C C6 FAD . . . E 2 73.711 54.889 67.993 0.9 168.06 ? C6 FAD 501 B 1 HETATM 33 C C7 FAD . . . E 2 74.435 55.44 66.905 0.9 163.27 ? C7 FAD 501 B 1 HETATM 34 C C7M FAD . . . E 2 75.03 56.803 67.032 0.9 158.58 ? C7M FAD 501 B 1 HETATM 35 C C8 FAD . . . E 2 74.588 54.682 65.637 0.9 162.07 ? C8 FAD 501 B 1 HETATM 36 C C8M FAD . . . E 2 75.31 55.096 64.374 0.9 149.08 ? C8M FAD 501 B 1 HETATM 37 C C9 FAD . . . E 2 73.979 53.462 65.596 0.9 187.58 ? C9 FAD 501 B 1 HETATM 38 C C9A FAD . . . E 2 73.258 52.856 66.638 0.9 189.78 ? C9A FAD 501 B 1 HETATM 39 N N10 FAD . . . E 2 72.669 51.563 66.461 0.9 168.75 ? N10 FAD 501 B 1 HETATM 40 C C10 FAD . . . E 2 71.929 51.035 67.589 0.9 157.77 ? C10 FAD 501 B 1 HETATM 41 C C1' FAD . . . E 2 72.918 50.852 65.164 0.9 143.65 ? C1' FAD 501 B 1 HETATM 42 C C2' FAD . . . E 2 74.444 50.402 65.02 0.9 132.5 ? C2' FAD 501 B 1 HETATM 43 O O2' FAD . . . E 2 75.011 50.091 66.315 0.9 114.55 ? O2' FAD 501 B 1 HETATM 44 C C3' FAD . . . E 2 75.474 51.357 64.308 0.9 120.37 ? C3' FAD 501 B 1 HETATM 45 O O3' FAD . . . E 2 74.883 51.903 63.098 0.9 106.59 ? O3' FAD 501 B 1 HETATM 46 C C4' FAD . . . E 2 76.846 50.836 63.862 0.9 111.23 ? C4' FAD 501 B 1 HETATM 47 O O4' FAD . . . E 2 76.651 49.753 62.941 0.9 124.16 ? O4' FAD 501 B 1 HETATM 48 C C5' FAD . . . E 2 77.807 50.423 64.976 0.9 86.14 ? C5' FAD 501 B 1 HETATM 49 O O5' FAD . . . E 2 78.212 49.047 64.818 0.9 75.85 ? O5' FAD 501 B 1 HETATM 50 P P FAD . . . E 2 79.191 48.286 63.742 0.9 60.93 ? P FAD 501 B 1 HETATM 51 O O1P FAD . . . E 2 79.764 47.118 64.518 0.9 47.21 ? O1P FAD 501 B 1 HETATM 52 O O2P FAD . . . E 2 78.46 47.995 62.437 0.9 53.49 ? O2P FAD 501 B 1 HETATM 53 O O3P FAD . . . E 2 80.323 49.385 63.319 0.9 61.49 ? O3P FAD 501 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #