data_5O8X # _model_server_result.job_id JNh9tUxFpB2vMeaaNoJQsQ _model_server_result.datetime_utc '2025-02-05 16:58:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o8x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 5O8X # _exptl.entry_id 5O8X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 136.989 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CACODYLATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.41 _cell.angle_gamma 90 _cell.entry_id 5O8X _cell.length_a 115.064 _cell.length_b 116.358 _cell.length_c 54.865 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O8X _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 176 A ASP 181 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc2 A OD1 ASP 178 A ASP 183 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc3 A OD1 ASP 180 A ASP 185 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc4 A O HIS 182 A HIS 187 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc5 A OD1 ASP 191 A ASP 196 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc6 A OD2 ASP 191 A ASP 196 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc7 B OD1 ASP 176 B ASP 181 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc8 B OD1 ASP 178 B ASP 183 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc9 B OD1 ASP 180 B ASP 185 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc10 B O HIS 182 B HIS 187 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc11 B OD1 ASP 191 B ASP 196 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc12 B OD2 ASP 191 B ASP 196 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? # _chem_comp.formula 'C2 H6 As O2 -1' _chem_comp.formula_weight 136.989 _chem_comp.id CAC _chem_comp.mon_nstd_flag . _chem_comp.name 'CACODYLATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms dimethylarsinate # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag AS O1 CAC doub 70 n n AS O2 CAC sing 71 n n AS C1 CAC sing 72 n n AS C2 CAC sing 73 n n C1 H11 CAC sing 74 n n C1 H12 CAC sing 75 n n C1 H13 CAC sing 76 n n C2 H21 CAC sing 77 n n C2 H22 CAC sing 78 n n C2 H23 CAC sing 79 n n # _atom_sites.entry_id 5O8X _atom_sites.fract_transf_matrix[1][1] 0.008691 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004701 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020722 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 401 2 CA CA . D 3 CAC A 1 402 1 CAC CAC . E 4 GOL A 1 403 1 GOL GOL . F 2 CA B 1 401 1 CA CA . G 3 CAC B 1 402 2 CAC CAC . H 5 HOH A 1 501 19 HOH HOH . H 5 HOH A 2 502 50 HOH HOH . H 5 HOH A 3 503 73 HOH HOH . H 5 HOH A 4 504 1 HOH HOH . H 5 HOH A 5 505 47 HOH HOH . H 5 HOH A 6 506 58 HOH HOH . H 5 HOH A 7 507 20 HOH HOH . H 5 HOH A 8 508 57 HOH HOH . H 5 HOH A 9 509 61 HOH HOH . H 5 HOH A 10 510 37 HOH HOH . H 5 HOH A 11 511 22 HOH HOH . H 5 HOH A 12 512 30 HOH HOH . H 5 HOH A 13 513 40 HOH HOH . H 5 HOH A 14 514 55 HOH HOH . H 5 HOH A 15 515 11 HOH HOH . H 5 HOH A 16 516 64 HOH HOH . H 5 HOH A 17 517 63 HOH HOH . H 5 HOH A 18 518 15 HOH HOH . H 5 HOH A 19 519 36 HOH HOH . H 5 HOH A 20 520 3 HOH HOH . H 5 HOH A 21 521 59 HOH HOH . H 5 HOH A 22 522 32 HOH HOH . H 5 HOH A 23 523 45 HOH HOH . H 5 HOH A 24 524 14 HOH HOH . H 5 HOH A 25 525 28 HOH HOH . H 5 HOH A 26 526 72 HOH HOH . H 5 HOH A 27 527 27 HOH HOH . H 5 HOH A 28 528 60 HOH HOH . H 5 HOH A 29 529 5 HOH HOH . H 5 HOH A 30 530 51 HOH HOH . H 5 HOH A 31 531 52 HOH HOH . H 5 HOH A 32 532 6 HOH HOH . H 5 HOH A 33 533 62 HOH HOH . H 5 HOH A 34 534 49 HOH HOH . H 5 HOH A 35 535 56 HOH HOH . H 5 HOH A 36 536 65 HOH HOH . H 5 HOH A 37 537 35 HOH HOH . H 5 HOH A 38 538 74 HOH HOH . H 5 HOH A 39 539 53 HOH HOH . H 5 HOH A 40 540 54 HOH HOH . H 5 HOH A 41 541 71 HOH HOH . I 5 HOH B 1 501 18 HOH HOH . I 5 HOH B 2 502 42 HOH HOH . I 5 HOH B 3 503 8 HOH HOH . I 5 HOH B 4 504 23 HOH HOH . I 5 HOH B 5 505 4 HOH HOH . I 5 HOH B 6 506 24 HOH HOH . I 5 HOH B 7 507 33 HOH HOH . I 5 HOH B 8 508 7 HOH HOH . I 5 HOH B 9 509 26 HOH HOH . I 5 HOH B 10 510 21 HOH HOH . I 5 HOH B 11 511 2 HOH HOH . I 5 HOH B 12 512 13 HOH HOH . I 5 HOH B 13 513 68 HOH HOH . I 5 HOH B 14 514 17 HOH HOH . I 5 HOH B 15 515 29 HOH HOH . I 5 HOH B 16 516 67 HOH HOH . I 5 HOH B 17 517 31 HOH HOH . I 5 HOH B 18 518 34 HOH HOH . I 5 HOH B 19 519 12 HOH HOH . I 5 HOH B 20 520 25 HOH HOH . I 5 HOH B 21 521 16 HOH HOH . I 5 HOH B 22 522 41 HOH HOH . I 5 HOH B 23 523 10 HOH HOH . I 5 HOH B 24 524 9 HOH HOH . I 5 HOH B 25 525 48 HOH HOH . I 5 HOH B 26 526 38 HOH HOH . I 5 HOH B 27 527 70 HOH HOH . I 5 HOH B 28 528 46 HOH HOH . I 5 HOH B 29 529 43 HOH HOH . I 5 HOH B 30 530 66 HOH HOH . I 5 HOH B 31 531 44 HOH HOH . I 5 HOH B 32 532 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 AS AS CAC . . . G 3 -45.769 -19.411 3.766 1 62.35 ? AS CAC 402 B 1 HETATM 2 O O1 CAC . . . G 3 -47.326 -19.455 4.345 1 50.68 ? O1 CAC 402 B 1 HETATM 3 O O2 CAC . . . G 3 -45.734 -18.672 2.28 1 81.84 ? O2 CAC 402 B 1 HETATM 4 C C1 CAC . . . G 3 -44.705 -18.342 4.918 1 55.84 ? C1 CAC 402 B 1 HETATM 5 C C2 CAC . . . G 3 -45.037 -21.164 3.659 1 46.85 ? C2 CAC 402 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 5 #