data_5O8Z
#
_model_server_result.job_id            XstMfNgryxJiGOr6oc-1Ig 
_model_server_result.datetime_utc      '2024-11-14 09:39:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5o8z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    5O8Z 
#
_exptl.entry_id    5O8Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              66.007 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BERYLLIUM TRIFLUORIDE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         62.6 
_cell.angle_beta          81.61 
_cell.angle_gamma         79.66 
_cell.entry_id            5O8Z 
_cell.length_a            37.392 
_cell.length_b            54.266 
_cell.length_c            54.986 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5O8Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 11 A ASP 11 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc2 A OD1 ASP 56 A ASP 56 1_555 C BE BEF . A BEF 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? 
metalc ? metalc3 A OD2 ASP 56 A ASP 56 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc4 A O SER 58 A SER 58 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc5 D MG MG . A MG 302 1_555 G O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc6 D MG MG . A MG 302 1_555 G O HOH . A HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? 
metalc ? metalc7 B OD1 ASP 11 B ASP 11 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc8 B OD1 ASP 56 B ASP 56 1_555 E BE BEF . B BEF 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? 
metalc ? metalc9 B OD2 ASP 56 B ASP 56 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc10 B O SER 58 B SER 58 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc11 F MG MG . B MG 302 1_555 H O HOH . B HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc12 F MG MG . B MG 302 1_555 H O HOH . B HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
#
_chem_comp.formula           'Be F3 -1' 
_chem_comp.formula_weight    66.007 
_chem_comp.id                BEF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BERYLLIUM TRIFLUORIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
BE F1 BEF sing 70 n n 
BE F2 BEF sing 71 n n 
BE F3 BEF sing 72 n n 
#
_atom_sites.entry_id                     5O8Z 
_atom_sites.fract_transf_matrix[1][1]    0.026744 
_atom_sites.fract_transf_matrix[1][2]    -0.004881 
_atom_sites.fract_transf_matrix[1][3]    -0.001974 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018732 
_atom_sites.fract_transf_matrix[2][3]    -0.009334 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020539 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BEF A 1 301 10 BEF BFD . 
D 3 MG A 1 302 10 MG MG . 
E 2 BEF B 1 301 2 BEF BFD . 
F 3 MG B 1 302 2 MG MG . 
G 4 HOH A 1 401 7 HOH HOH . 
G 4 HOH A 2 402 102 HOH HOH . 
G 4 HOH A 3 403 99 HOH HOH . 
G 4 HOH A 4 404 120 HOH HOH . 
G 4 HOH A 5 405 27 HOH HOH . 
G 4 HOH A 6 406 32 HOH HOH . 
G 4 HOH A 7 407 40 HOH HOH . 
G 4 HOH A 8 408 103 HOH HOH . 
G 4 HOH A 9 409 125 HOH HOH . 
G 4 HOH A 10 410 105 HOH HOH . 
G 4 HOH A 11 411 53 HOH HOH . 
G 4 HOH A 12 412 24 HOH HOH . 
G 4 HOH A 13 413 121 HOH HOH . 
G 4 HOH A 14 414 130 HOH HOH . 
G 4 HOH A 15 415 43 HOH HOH . 
G 4 HOH A 16 416 67 HOH HOH . 
G 4 HOH A 17 417 3 HOH HOH . 
G 4 HOH A 18 418 22 HOH HOH . 
G 4 HOH A 19 419 133 HOH HOH . 
G 4 HOH A 20 420 5 HOH HOH . 
G 4 HOH A 21 421 76 HOH HOH . 
G 4 HOH A 22 422 2 HOH HOH . 
G 4 HOH A 23 423 6 HOH HOH . 
G 4 HOH A 24 424 78 HOH HOH . 
G 4 HOH A 25 425 128 HOH HOH . 
G 4 HOH A 26 426 143 HOH HOH . 
G 4 HOH A 27 427 142 HOH HOH . 
G 4 HOH A 28 428 23 HOH HOH . 
G 4 HOH A 29 429 1 HOH HOH . 
G 4 HOH A 30 430 100 HOH HOH . 
G 4 HOH A 31 431 129 HOH HOH . 
G 4 HOH A 32 432 126 HOH HOH . 
G 4 HOH A 33 433 80 HOH HOH . 
G 4 HOH A 34 434 101 HOH HOH . 
G 4 HOH A 35 435 132 HOH HOH . 
G 4 HOH A 36 436 134 HOH HOH . 
G 4 HOH A 37 437 122 HOH HOH . 
G 4 HOH A 38 438 131 HOH HOH . 
H 4 HOH B 1 401 28 HOH HOH . 
H 4 HOH B 2 402 139 HOH HOH . 
H 4 HOH B 3 403 113 HOH HOH . 
H 4 HOH B 4 404 114 HOH HOH . 
H 4 HOH B 5 405 106 HOH HOH . 
H 4 HOH B 6 406 115 HOH HOH . 
H 4 HOH B 7 407 138 HOH HOH . 
H 4 HOH B 8 408 12 HOH HOH . 
H 4 HOH B 9 409 68 HOH HOH . 
H 4 HOH B 10 410 144 HOH HOH . 
H 4 HOH B 11 411 124 HOH HOH . 
H 4 HOH B 12 412 112 HOH HOH . 
H 4 HOH B 13 413 117 HOH HOH . 
H 4 HOH B 14 414 147 HOH HOH . 
H 4 HOH B 15 415 145 HOH HOH . 
H 4 HOH B 16 416 37 HOH HOH . 
H 4 HOH B 17 417 11 HOH HOH . 
H 4 HOH B 18 418 104 HOH HOH . 
H 4 HOH B 19 419 15 HOH HOH . 
H 4 HOH B 20 420 10 HOH HOH . 
H 4 HOH B 21 421 140 HOH HOH . 
H 4 HOH B 22 422 110 HOH HOH . 
H 4 HOH B 23 423 96 HOH HOH . 
H 4 HOH B 24 424 20 HOH HOH . 
H 4 HOH B 25 425 146 HOH HOH . 
H 4 HOH B 26 426 94 HOH HOH . 
H 4 HOH B 27 427 35 HOH HOH . 
H 4 HOH B 28 428 92 HOH HOH . 
H 4 HOH B 29 429 14 HOH HOH . 
H 4 HOH B 30 430 111 HOH HOH . 
H 4 HOH B 31 431 135 HOH HOH . 
H 4 HOH B 32 432 93 HOH HOH . 
H 4 HOH B 33 433 16 HOH HOH . 
H 4 HOH B 34 434 18 HOH HOH . 
H 4 HOH B 35 435 148 HOH HOH . 
H 4 HOH B 36 436 109 HOH HOH . 
H 4 HOH B 37 437 149 HOH HOH . 
H 4 HOH B 38 438 86 HOH HOH . 
H 4 HOH B 39 439 49 HOH HOH . 
H 4 HOH B 40 440 137 HOH HOH . 
H 4 HOH B 41 441 119 HOH HOH . 
H 4 HOH B 42 442 118 HOH HOH . 
H 4 HOH B 43 443 141 HOH HOH . 
H 4 HOH B 44 444 59 HOH HOH . 
H 4 HOH B 45 445 127 HOH HOH . 
H 4 HOH B 46 446 108 HOH HOH . 
H 4 HOH B 47 447 123 HOH HOH . 
H 4 HOH B 48 448 95 HOH HOH . 
H 4 HOH B 49 449 136 HOH HOH . 
H 4 HOH B 50 450 69 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 BE BE BEF . . . E 2 -13.29 2.83 15.998 1 27.59 ? BE BEF 301 B 1 
HETATM 2 F F1 BEF . . . E 2 -14.056 3.567 14.957 1 27.39 ? F1 BEF 301 B 1 
HETATM 3 F F2 BEF . . . E 2 -13.518 3.508 17.307 1 28.13 ? F2 BEF 301 B 1 
HETATM 4 F F3 BEF . . . E 2 -11.833 2.6 15.787 1 26.76 ? F3 BEF 301 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#