data_5O90 # _model_server_result.job_id CRBKu-vd59D4QMhc16G1-w _model_server_result.datetime_utc '2025-07-31 18:56:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o90 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5O90 # _exptl.entry_id 5O90 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 338.382 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-FLUOROPHENYL)-1-(4-PIPERIDINYL)-5-(2-AMINO-4-PYRIMIDINYL)-IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.09 _cell.angle_gamma 90 _cell.entry_id 5O90 _cell.length_a 45.92 _cell.length_b 73.58 _cell.length_c 58.97 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O90 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H19 F N6' _chem_comp.formula_weight 338.382 _chem_comp.id SB4 _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-FLUOROPHENYL)-1-(4-PIPERIDINYL)-5-(2-AMINO-4-PYRIMIDINYL)-IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SB220025 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA1 CA2 SB4 sing 277 n n CA1 CA6 SB4 sing 278 n n CA1 H11 SB4 sing 279 n n CA1 H12 SB4 sing 280 n n CA2 NA3 SB4 sing 281 n n CA2 H21 SB4 sing 282 n n CA2 H22 SB4 sing 283 n n NA3 CA4 SB4 sing 284 n n NA3 HN3 SB4 sing 285 n n CA4 CA5 SB4 sing 286 n n CA4 H41 SB4 sing 287 n n CA4 H42 SB4 sing 288 n n CA5 CA6 SB4 sing 289 n n CA5 H51 SB4 sing 290 n n CA5 H52 SB4 sing 291 n n CA6 ND1 SB4 sing 292 n n CA6 H6 SB4 sing 293 n n CB1 CB2 SB4 doub 294 n y CB1 CB6 SB4 sing 295 n y CB1 HB1 SB4 sing 296 n n CB2 CB3 SB4 sing 297 n y CB2 HB2 SB4 sing 298 n n CB3 CB4 SB4 doub 299 n y CB3 FB7 SB4 sing 300 n n CB4 CB5 SB4 sing 301 n y CB4 HB4 SB4 sing 302 n n CB5 CB6 SB4 doub 303 n y CB5 HB5 SB4 sing 304 n n CB6 CD4 SB4 sing 305 n y CC1 CC2 SB4 sing 306 n y CC1 CC6 SB4 doub 307 n y CC1 HC1 SB4 sing 308 n n CC2 NC3 SB4 doub 309 n y CC2 CD5 SB4 sing 310 n y NC3 CC4 SB4 sing 311 n y CC4 NC5 SB4 doub 312 n y CC4 NC7 SB4 sing 313 n n NC5 CC6 SB4 sing 314 n y CC6 HC6 SB4 sing 315 n n NC7 HN71 SB4 sing 316 n n NC7 HN72 SB4 sing 317 n n ND1 CD2 SB4 sing 318 n y ND1 CD5 SB4 sing 319 n y CD2 ND3 SB4 doub 320 n y CD2 H2 SB4 sing 321 n n ND3 CD4 SB4 sing 322 n y CD4 CD5 SB4 doub 323 n y # _atom_sites.entry_id 5O90 _atom_sites.fract_transf_matrix[1][1] 0.021777 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000414 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013591 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SB4 A 1 401 401 SB4 SB4 . D 4 HOH A 1 501 2 HOH HOH . D 4 HOH A 2 502 1 HOH HOH . D 4 HOH A 3 503 10 HOH HOH . D 4 HOH A 4 504 9 HOH HOH . D 4 HOH A 5 505 4 HOH HOH . D 4 HOH A 6 506 3 HOH HOH . D 4 HOH A 7 507 11 HOH HOH . E 4 HOH B 1 501 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA1 SB4 . . . C 3 -23.821 5.699 -27.146 1 64.67 ? CA1 SB4 401 A 1 HETATM 2 C CA2 SB4 . . . C 3 -24.415 6.479 -25.954 1 76.14 ? CA2 SB4 401 A 1 HETATM 3 N NA3 SB4 . . . C 3 -23.884 6.076 -24.592 1 63.23 ? NA3 SB4 401 A 1 HETATM 4 C CA4 SB4 . . . C 3 -22.383 6.119 -24.525 1 60.58 ? CA4 SB4 401 A 1 HETATM 5 C CA5 SB4 . . . C 3 -21.808 6.469 -25.916 1 62.26 ? CA5 SB4 401 A 1 HETATM 6 C CA6 SB4 . . . C 3 -22.339 5.512 -26.95 1 61.34 ? CA6 SB4 401 A 1 HETATM 7 C CB1 SB4 . . . C 3 -21.299 4.296 -32.15 1 64.42 ? CB1 SB4 401 A 1 HETATM 8 C CB2 SB4 . . . C 3 -21.034 3.725 -33.389 1 62.34 ? CB2 SB4 401 A 1 HETATM 9 C CB3 SB4 . . . C 3 -19.804 3.953 -33.973 1 60.73 ? CB3 SB4 401 A 1 HETATM 10 C CB4 SB4 . . . C 3 -18.848 4.728 -33.33 1 68.64 ? CB4 SB4 401 A 1 HETATM 11 C CB5 SB4 . . . C 3 -19.13 5.287 -32.085 1 63.99 ? CB5 SB4 401 A 1 HETATM 12 C CB6 SB4 . . . C 3 -20.349 5.053 -31.478 1 65.15 ? CB6 SB4 401 A 1 HETATM 13 F FB7 SB4 . . . C 3 -19.528 3.412 -35.173 1 58.15 ? FB7 SB4 401 A 1 HETATM 14 C CC1 SB4 . . . C 3 -20.97 2.468 -29.649 1 63.81 ? CC1 SB4 401 A 1 HETATM 15 C CC2 SB4 . . . C 3 -21.794 3.453 -29.168 1 65.46 ? CC2 SB4 401 A 1 HETATM 16 N NC3 SB4 . . . C 3 -22.853 3.024 -28.478 1 67.41 ? NC3 SB4 401 A 1 HETATM 17 C CC4 SB4 . . . C 3 -23.117 1.7 -28.309 1 63.57 ? CC4 SB4 401 A 1 HETATM 18 N NC5 SB4 . . . C 3 -22.297 0.745 -28.836 1 62.21 ? NC5 SB4 401 A 1 HETATM 19 C CC6 SB4 . . . C 3 -21.227 1.136 -29.495 1 57.96 ? CC6 SB4 401 A 1 HETATM 20 N NC7 SB4 . . . C 3 -24.304 1.32 -27.558 1 62.13 ? NC7 SB4 401 A 1 HETATM 21 N ND1 SB4 . . . C 3 -21.662 5.734 -28.267 1 68.13 ? ND1 SB4 401 A 1 HETATM 22 C CD2 SB4 . . . C 3 -21.177 6.927 -28.641 1 62.31 ? CD2 SB4 401 A 1 HETATM 23 N ND3 SB4 . . . C 3 -20.64 6.791 -29.845 1 66.17 ? ND3 SB4 401 A 1 HETATM 24 C CD4 SB4 . . . C 3 -20.799 5.523 -30.238 1 71.37 ? CD4 SB4 401 A 1 HETATM 25 C CD5 SB4 . . . C 3 -21.475 4.832 -29.234 1 65.9 ? CD5 SB4 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #