data_5O94
#
_model_server_result.job_id            SaMUc199-oItGdPXXLDXMg 
_model_server_result.datetime_utc      '2024-11-04 23:29:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5o94 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":102}' 
#
_entry.id    5O94 
#
_exptl.entry_id    5O94 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5O94 
_cell.length_a            54.178 
_cell.length_b            54.178 
_cell.length_c            81.077 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5O94 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 23 A HIS 28 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
metalc ? metalc2 A OE2 GLU 47 A GLU 52 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc3 A NE2 HIS 50 A HIS 55 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc4 A OXT GLU 56 A GLU 61 1_555 B ZN ZN . A ZN 101 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? 
metalc ? metalc5 A OE1 GLU 56 A GLU 61 1_555 D NA NA . A NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? 
metalc ? metalc6 D NA NA . A NA 103 1_555 M O HOH . A HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 220 n n 
C1 H11 MPD sing 221 n n 
C1 H12 MPD sing 222 n n 
C1 H13 MPD sing 223 n n 
C2 O2 MPD sing 224 n n 
C2 CM MPD sing 225 n n 
C2 C3 MPD sing 226 n n 
O2 HO2 MPD sing 227 n n 
CM HM1 MPD sing 228 n n 
CM HM2 MPD sing 229 n n 
CM HM3 MPD sing 230 n n 
C3 C4 MPD sing 231 n n 
C3 H31 MPD sing 232 n n 
C3 H32 MPD sing 233 n n 
C4 O4 MPD sing 234 n n 
C4 C5 MPD sing 235 n n 
C4 H4 MPD sing 236 n n 
O4 HO4 MPD sing 237 n n 
C5 H51 MPD sing 238 n n 
C5 H52 MPD sing 239 n n 
C5 H53 MPD sing 240 n n 
#
_atom_sites.entry_id                     5O94 
_atom_sites.fract_transf_matrix[1][1]    0.018458 
_atom_sites.fract_transf_matrix[1][2]    0.010657 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021313 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012334 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 101 1 ZN ZN . 
C 3 MPD A 1 102 4 MPD MPD . 
D 4 NA A 1 103 2 NA NA . 
E 5 SO4 A 1 104 1 SO4 SO4 . 
F 5 SO4 A 1 105 5 SO4 SO4 . 
G 5 SO4 A 1 106 6 SO4 SO4 . 
H 6 EDO A 1 107 1 EDO EDO . 
I 6 EDO A 1 108 2 EDO EDO . 
J 6 EDO A 1 109 3 EDO EDO . 
K 7 GOL A 1 110 1 GOL GOL . 
L 7 GOL A 1 111 2 GOL GOL . 
M 8 HOH A 1 201 36 HOH HOH . 
M 8 HOH A 2 202 20 HOH HOH . 
M 8 HOH A 3 203 10 HOH HOH . 
M 8 HOH A 4 204 21 HOH HOH . 
M 8 HOH A 5 205 18 HOH HOH . 
M 8 HOH A 6 206 5 HOH HOH . 
M 8 HOH A 7 207 34 HOH HOH . 
M 8 HOH A 8 208 1 HOH HOH . 
M 8 HOH A 9 209 31 HOH HOH . 
M 8 HOH A 10 210 3 HOH HOH . 
M 8 HOH A 11 211 2 HOH HOH . 
M 8 HOH A 12 212 8 HOH HOH . 
M 8 HOH A 13 213 8 HOH HOH . 
M 8 HOH A 14 214 28 HOH HOH . 
M 8 HOH A 15 215 26 HOH HOH . 
M 8 HOH A 16 216 32 HOH HOH . 
M 8 HOH A 17 217 9 HOH HOH . 
M 8 HOH A 18 218 33 HOH HOH . 
M 8 HOH A 19 219 13 HOH HOH . 
M 8 HOH A 20 220 7 HOH HOH . 
M 8 HOH A 21 221 11 HOH HOH . 
M 8 HOH A 22 222 6 HOH HOH . 
M 8 HOH A 23 223 14 HOH HOH . 
M 8 HOH A 24 224 16 HOH HOH . 
M 8 HOH A 25 225 19 HOH HOH . 
M 8 HOH A 26 226 13 HOH HOH . 
M 8 HOH A 27 227 10 HOH HOH . 
M 8 HOH A 28 228 15 HOH HOH . 
M 8 HOH A 29 229 17 HOH HOH . 
M 8 HOH A 30 230 38 HOH HOH . 
M 8 HOH A 31 231 12 HOH HOH . 
M 8 HOH A 32 232 37 HOH HOH . 
M 8 HOH A 33 233 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . C 3 -30.748 1.796 3.16 1 80.71 ? C1 MPD 102 A 1 
HETATM 2 C C2 MPD . . . C 3 -30.844 2.569 1.845 1 81.86 ? C2 MPD 102 A 1 
HETATM 3 O O2 MPD . . . C 3 -29.537 2.608 1.257 1 80.57 ? O2 MPD 102 A 1 
HETATM 4 C CM MPD . . . C 3 -31.792 1.847 0.898 1 81.97 ? CM MPD 102 A 1 
HETATM 5 C C3 MPD . . . C 3 -31.33 4.002 2.129 1 83.64 ? C3 MPD 102 A 1 
HETATM 6 C C4 MPD . . . C 3 -31.381 4.958 0.924 1 83.56 ? C4 MPD 102 A 1 
HETATM 7 O O4 MPD . . . C 3 -30.458 4.571 -0.093 1 85.87 ? O4 MPD 102 A 1 
HETATM 8 C C5 MPD . . . C 3 -32.776 5.041 0.312 1 86.62 ? C5 MPD 102 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
#