data_5O94 # _model_server_result.job_id 3EAN6R12LlVjTRgfJNci-w _model_server_result.datetime_utc '2024-11-04 23:28:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o94 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":110}' # _entry.id 5O94 # _exptl.entry_id 5O94 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5O94 _cell.length_a 54.178 _cell.length_b 54.178 _cell.length_c 81.077 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O94 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 K N N ? 7 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 23 A HIS 28 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc2 A OE2 GLU 47 A GLU 52 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc3 A NE2 HIS 50 A HIS 55 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc4 A OXT GLU 56 A GLU 61 1_555 B ZN ZN . A ZN 101 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc5 A OE1 GLU 56 A GLU 61 1_555 D NA NA . A NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? metalc ? metalc6 D NA NA . A NA 103 1_555 M O HOH . A HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 99 n n C1 C2 GOL sing 100 n n C1 H11 GOL sing 101 n n C1 H12 GOL sing 102 n n O1 HO1 GOL sing 103 n n C2 O2 GOL sing 104 n n C2 C3 GOL sing 105 n n C2 H2 GOL sing 106 n n O2 HO2 GOL sing 107 n n C3 O3 GOL sing 108 n n C3 H31 GOL sing 109 n n C3 H32 GOL sing 110 n n O3 HO3 GOL sing 111 n n # _atom_sites.entry_id 5O94 _atom_sites.fract_transf_matrix[1][1] 0.018458 _atom_sites.fract_transf_matrix[1][2] 0.010657 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012334 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 101 1 ZN ZN . C 3 MPD A 1 102 4 MPD MPD . D 4 NA A 1 103 2 NA NA . E 5 SO4 A 1 104 1 SO4 SO4 . F 5 SO4 A 1 105 5 SO4 SO4 . G 5 SO4 A 1 106 6 SO4 SO4 . H 6 EDO A 1 107 1 EDO EDO . I 6 EDO A 1 108 2 EDO EDO . J 6 EDO A 1 109 3 EDO EDO . K 7 GOL A 1 110 1 GOL GOL . L 7 GOL A 1 111 2 GOL GOL . M 8 HOH A 1 201 36 HOH HOH . M 8 HOH A 2 202 20 HOH HOH . M 8 HOH A 3 203 10 HOH HOH . M 8 HOH A 4 204 21 HOH HOH . M 8 HOH A 5 205 18 HOH HOH . M 8 HOH A 6 206 5 HOH HOH . M 8 HOH A 7 207 34 HOH HOH . M 8 HOH A 8 208 1 HOH HOH . M 8 HOH A 9 209 31 HOH HOH . M 8 HOH A 10 210 3 HOH HOH . M 8 HOH A 11 211 2 HOH HOH . M 8 HOH A 12 212 8 HOH HOH . M 8 HOH A 13 213 8 HOH HOH . M 8 HOH A 14 214 28 HOH HOH . M 8 HOH A 15 215 26 HOH HOH . M 8 HOH A 16 216 32 HOH HOH . M 8 HOH A 17 217 9 HOH HOH . M 8 HOH A 18 218 33 HOH HOH . M 8 HOH A 19 219 13 HOH HOH . M 8 HOH A 20 220 7 HOH HOH . M 8 HOH A 21 221 11 HOH HOH . M 8 HOH A 22 222 6 HOH HOH . M 8 HOH A 23 223 14 HOH HOH . M 8 HOH A 24 224 16 HOH HOH . M 8 HOH A 25 225 19 HOH HOH . M 8 HOH A 26 226 13 HOH HOH . M 8 HOH A 27 227 10 HOH HOH . M 8 HOH A 28 228 15 HOH HOH . M 8 HOH A 29 229 17 HOH HOH . M 8 HOH A 30 230 38 HOH HOH . M 8 HOH A 31 231 12 HOH HOH . M 8 HOH A 32 232 37 HOH HOH . M 8 HOH A 33 233 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 7 -18.418 8.755 -0.307 1 70.06 ? C1 GOL 110 A 1 HETATM 2 O O1 GOL . . . K 7 -19.22 7.914 -1.206 1 61.56 ? O1 GOL 110 A 1 HETATM 3 C C2 GOL . . . K 7 -18.884 10.228 -0.307 1 66.45 ? C2 GOL 110 A 1 HETATM 4 O O2 GOL . . . K 7 -20.291 10.291 -0.399 1 68.89 ? O2 GOL 110 A 1 HETATM 5 C C3 GOL . . . K 7 -18.448 10.997 0.944 1 66.93 ? C3 GOL 110 A 1 HETATM 6 O O3 GOL . . . K 7 -18.641 12.462 0.766 1 61.04 ? O3 GOL 110 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #