data_5O9O # _model_server_result.job_id J7I8iYPKfq2Sf63JC0WH0g _model_server_result.datetime_utc '2024-11-09 02:09:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o9o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5O9O # _exptl.entry_id 5O9O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5O9O _cell.length_a 50.196 _cell.length_b 70.714 _cell.length_c 151.167 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O9O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 89 A CYS 89 1_555 A SG CYS 118 A CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 231 A CYS 231 1_555 A SG CYS 367 A CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 A SG CYS 247 A CYS 247 1_555 A SG CYS 278 A CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? disulf ? disulf4 A SG CYS 390 A CYS 390 1_555 A SG CYS 442 A CYS 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 392 A CYS 392 1_555 A SG CYS 489 A CYS 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf6 A SG CYS 399 A CYS 399 1_555 A SG CYS 466 A CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf7 A SG CYS 419 A CYS 419 1_555 A SG CYS 424 A CYS 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 182 n n C1 C2 EDO sing 183 n n C1 H11 EDO sing 184 n n C1 H12 EDO sing 185 n n O1 HO1 EDO sing 186 n n C2 O2 EDO sing 187 n n C2 H21 EDO sing 188 n n C2 H22 EDO sing 189 n n O2 HO2 EDO sing 190 n n # _atom_sites.entry_id 5O9O _atom_sites.fract_transf_matrix[1][1] 0.019922 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006615 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9PB A 1 601 1 9PB DRG . C 3 EDO A 1 602 1 EDO EDO . D 3 EDO A 1 603 2 EDO EDO . E 3 EDO A 1 604 3 EDO EDO . F 3 EDO A 1 605 4 EDO EDO . G 3 EDO A 1 606 5 EDO EDO . H 4 HOH A 1 701 185 HOH HOH . H 4 HOH A 2 702 177 HOH HOH . H 4 HOH A 3 703 350 HOH HOH . H 4 HOH A 4 704 126 HOH HOH . H 4 HOH A 5 705 268 HOH HOH . H 4 HOH A 6 706 273 HOH HOH . H 4 HOH A 7 707 205 HOH HOH . H 4 HOH A 8 708 101 HOH HOH . H 4 HOH A 9 709 197 HOH HOH . H 4 HOH A 10 710 250 HOH HOH . H 4 HOH A 11 711 82 HOH HOH . H 4 HOH A 12 712 46 HOH HOH . H 4 HOH A 13 713 56 HOH HOH . H 4 HOH A 14 714 332 HOH HOH . H 4 HOH A 15 715 287 HOH HOH . H 4 HOH A 16 716 97 HOH HOH . H 4 HOH A 17 717 357 HOH HOH . H 4 HOH A 18 718 212 HOH HOH . H 4 HOH A 19 719 2 HOH HOH . H 4 HOH A 20 720 182 HOH HOH . H 4 HOH A 21 721 191 HOH HOH . H 4 HOH A 22 722 330 HOH HOH . H 4 HOH A 23 723 225 HOH HOH . H 4 HOH A 24 724 20 HOH HOH . H 4 HOH A 25 725 223 HOH HOH . H 4 HOH A 26 726 59 HOH HOH . H 4 HOH A 27 727 253 HOH HOH . H 4 HOH A 28 728 111 HOH HOH . H 4 HOH A 29 729 18 HOH HOH . H 4 HOH A 30 730 344 HOH HOH . H 4 HOH A 31 731 210 HOH HOH . H 4 HOH A 32 732 236 HOH HOH . H 4 HOH A 33 733 329 HOH HOH . H 4 HOH A 34 734 166 HOH HOH . H 4 HOH A 35 735 76 HOH HOH . H 4 HOH A 36 736 120 HOH HOH . H 4 HOH A 37 737 68 HOH HOH . H 4 HOH A 38 738 331 HOH HOH . H 4 HOH A 39 739 102 HOH HOH . H 4 HOH A 40 740 219 HOH HOH . H 4 HOH A 41 741 278 HOH HOH . H 4 HOH A 42 742 196 HOH HOH . H 4 HOH A 43 743 17 HOH HOH . H 4 HOH A 44 744 10 HOH HOH . H 4 HOH A 45 745 50 HOH HOH . H 4 HOH A 46 746 349 HOH HOH . H 4 HOH A 47 747 6 HOH HOH . H 4 HOH A 48 748 55 HOH HOH . H 4 HOH A 49 749 110 HOH HOH . H 4 HOH A 50 750 296 HOH HOH . H 4 HOH A 51 751 127 HOH HOH . H 4 HOH A 52 752 21 HOH HOH . H 4 HOH A 53 753 125 HOH HOH . H 4 HOH A 54 754 94 HOH HOH . H 4 HOH A 55 755 73 HOH HOH . H 4 HOH A 56 756 301 HOH HOH . H 4 HOH A 57 757 104 HOH HOH . H 4 HOH A 58 758 62 HOH HOH . H 4 HOH A 59 759 156 HOH HOH . H 4 HOH A 60 760 137 HOH HOH . H 4 HOH A 61 761 92 HOH HOH . H 4 HOH A 62 762 221 HOH HOH . H 4 HOH A 63 763 32 HOH HOH . H 4 HOH A 64 764 172 HOH HOH . H 4 HOH A 65 765 122 HOH HOH . H 4 HOH A 66 766 9 HOH HOH . H 4 HOH A 67 767 150 HOH HOH . H 4 HOH A 68 768 48 HOH HOH . H 4 HOH A 69 769 313 HOH HOH . H 4 HOH A 70 770 151 HOH HOH . H 4 HOH A 71 771 274 HOH HOH . H 4 HOH A 72 772 214 HOH HOH . H 4 HOH A 73 773 195 HOH HOH . H 4 HOH A 74 774 77 HOH HOH . H 4 HOH A 75 775 24 HOH HOH . H 4 HOH A 76 776 87 HOH HOH . H 4 HOH A 77 777 240 HOH HOH . H 4 HOH A 78 778 160 HOH HOH . H 4 HOH A 79 779 198 HOH HOH . H 4 HOH A 80 780 26 HOH HOH . H 4 HOH A 81 781 132 HOH HOH . H 4 HOH A 82 782 333 HOH HOH . H 4 HOH A 83 783 74 HOH HOH . H 4 HOH A 84 784 35 HOH HOH . H 4 HOH A 85 785 206 HOH HOH . H 4 HOH A 86 786 53 HOH HOH . H 4 HOH A 87 787 264 HOH HOH . H 4 HOH A 88 788 348 HOH HOH . H 4 HOH A 89 789 114 HOH HOH . H 4 HOH A 90 790 45 HOH HOH . H 4 HOH A 91 791 34 HOH HOH . H 4 HOH A 92 792 54 HOH HOH . H 4 HOH A 93 793 199 HOH HOH . H 4 HOH A 94 794 14 HOH HOH . H 4 HOH A 95 795 49 HOH HOH . H 4 HOH A 96 796 29 HOH HOH . H 4 HOH A 97 797 19 HOH HOH . H 4 HOH A 98 798 269 HOH HOH . H 4 HOH A 99 799 86 HOH HOH . H 4 HOH A 100 800 1 HOH HOH . H 4 HOH A 101 801 75 HOH HOH . H 4 HOH A 102 802 157 HOH HOH . H 4 HOH A 103 803 187 HOH HOH . H 4 HOH A 104 804 83 HOH HOH . H 4 HOH A 105 805 238 HOH HOH . H 4 HOH A 106 806 96 HOH HOH . H 4 HOH A 107 807 44 HOH HOH . H 4 HOH A 108 808 80 HOH HOH . H 4 HOH A 109 809 263 HOH HOH . H 4 HOH A 110 810 99 HOH HOH . H 4 HOH A 111 811 88 HOH HOH . H 4 HOH A 112 812 174 HOH HOH . H 4 HOH A 113 813 202 HOH HOH . H 4 HOH A 114 814 124 HOH HOH . H 4 HOH A 115 815 272 HOH HOH . H 4 HOH A 116 816 304 HOH HOH . H 4 HOH A 117 817 81 HOH HOH . H 4 HOH A 118 818 100 HOH HOH . H 4 HOH A 119 819 336 HOH HOH . H 4 HOH A 120 820 103 HOH HOH . H 4 HOH A 121 821 109 HOH HOH . H 4 HOH A 122 822 36 HOH HOH . H 4 HOH A 123 823 249 HOH HOH . H 4 HOH A 124 824 165 HOH HOH . H 4 HOH A 125 825 98 HOH HOH . H 4 HOH A 126 826 52 HOH HOH . H 4 HOH A 127 827 51 HOH HOH . H 4 HOH A 128 828 43 HOH HOH . H 4 HOH A 129 829 67 HOH HOH . H 4 HOH A 130 830 30 HOH HOH . H 4 HOH A 131 831 149 HOH HOH . H 4 HOH A 132 832 164 HOH HOH . H 4 HOH A 133 833 337 HOH HOH . H 4 HOH A 134 834 334 HOH HOH . H 4 HOH A 135 835 345 HOH HOH . H 4 HOH A 136 836 335 HOH HOH . H 4 HOH A 137 837 251 HOH HOH . H 4 HOH A 138 838 70 HOH HOH . H 4 HOH A 139 839 115 HOH HOH . H 4 HOH A 140 840 16 HOH HOH . H 4 HOH A 141 841 112 HOH HOH . H 4 HOH A 142 842 79 HOH HOH . H 4 HOH A 143 843 42 HOH HOH . H 4 HOH A 144 844 116 HOH HOH . H 4 HOH A 145 845 65 HOH HOH . H 4 HOH A 146 846 235 HOH HOH . H 4 HOH A 147 847 286 HOH HOH . H 4 HOH A 148 848 322 HOH HOH . H 4 HOH A 149 849 257 HOH HOH . H 4 HOH A 150 850 95 HOH HOH . H 4 HOH A 151 851 167 HOH HOH . H 4 HOH A 152 852 343 HOH HOH . H 4 HOH A 153 853 38 HOH HOH . H 4 HOH A 154 854 222 HOH HOH . H 4 HOH A 155 855 260 HOH HOH . H 4 HOH A 156 856 163 HOH HOH . H 4 HOH A 157 857 230 HOH HOH . H 4 HOH A 158 858 155 HOH HOH . H 4 HOH A 159 859 107 HOH HOH . H 4 HOH A 160 860 57 HOH HOH . H 4 HOH A 161 861 106 HOH HOH . H 4 HOH A 162 862 105 HOH HOH . H 4 HOH A 163 863 91 HOH HOH . H 4 HOH A 164 864 338 HOH HOH . H 4 HOH A 165 865 25 HOH HOH . H 4 HOH A 166 866 201 HOH HOH . H 4 HOH A 167 867 231 HOH HOH . H 4 HOH A 168 868 162 HOH HOH . H 4 HOH A 169 869 27 HOH HOH . H 4 HOH A 170 870 190 HOH HOH . H 4 HOH A 171 871 72 HOH HOH . H 4 HOH A 172 872 208 HOH HOH . H 4 HOH A 173 873 159 HOH HOH . H 4 HOH A 174 874 259 HOH HOH . H 4 HOH A 175 875 146 HOH HOH . H 4 HOH A 176 876 184 HOH HOH . H 4 HOH A 177 877 37 HOH HOH . H 4 HOH A 178 878 93 HOH HOH . H 4 HOH A 179 879 130 HOH HOH . H 4 HOH A 180 880 176 HOH HOH . H 4 HOH A 181 881 347 HOH HOH . H 4 HOH A 182 882 108 HOH HOH . H 4 HOH A 183 883 200 HOH HOH . H 4 HOH A 184 884 58 HOH HOH . H 4 HOH A 185 885 71 HOH HOH . H 4 HOH A 186 886 84 HOH HOH . H 4 HOH A 187 887 90 HOH HOH . H 4 HOH A 188 888 64 HOH HOH . H 4 HOH A 189 889 299 HOH HOH . H 4 HOH A 190 890 216 HOH HOH . H 4 HOH A 191 891 179 HOH HOH . H 4 HOH A 192 892 85 HOH HOH . H 4 HOH A 193 893 346 HOH HOH . H 4 HOH A 194 894 245 HOH HOH . H 4 HOH A 195 895 128 HOH HOH . H 4 HOH A 196 896 339 HOH HOH . H 4 HOH A 197 897 175 HOH HOH . H 4 HOH A 198 898 192 HOH HOH . H 4 HOH A 199 899 153 HOH HOH . H 4 HOH A 200 900 252 HOH HOH . H 4 HOH A 201 901 309 HOH HOH . H 4 HOH A 202 902 312 HOH HOH . H 4 HOH A 203 903 228 HOH HOH . H 4 HOH A 204 904 117 HOH HOH . H 4 HOH A 205 905 186 HOH HOH . H 4 HOH A 206 906 215 HOH HOH . H 4 HOH A 207 907 224 HOH HOH . H 4 HOH A 208 908 145 HOH HOH . H 4 HOH A 209 909 258 HOH HOH . H 4 HOH A 210 910 267 HOH HOH . H 4 HOH A 211 911 178 HOH HOH . H 4 HOH A 212 912 226 HOH HOH . H 4 HOH A 213 913 352 HOH HOH . H 4 HOH A 214 914 254 HOH HOH . H 4 HOH A 215 915 229 HOH HOH . H 4 HOH A 216 916 169 HOH HOH . H 4 HOH A 217 917 351 HOH HOH . H 4 HOH A 218 918 271 HOH HOH . H 4 HOH A 219 919 173 HOH HOH . H 4 HOH A 220 920 279 HOH HOH . H 4 HOH A 221 921 144 HOH HOH . H 4 HOH A 222 922 342 HOH HOH . H 4 HOH A 223 923 170 HOH HOH . H 4 HOH A 224 924 356 HOH HOH . H 4 HOH A 225 925 241 HOH HOH . H 4 HOH A 226 926 283 HOH HOH . H 4 HOH A 227 927 355 HOH HOH . H 4 HOH A 228 928 142 HOH HOH . H 4 HOH A 229 929 140 HOH HOH . H 4 HOH A 230 930 161 HOH HOH . H 4 HOH A 231 931 358 HOH HOH . H 4 HOH A 232 932 220 HOH HOH . H 4 HOH A 233 933 270 HOH HOH . H 4 HOH A 234 934 141 HOH HOH . H 4 HOH A 235 935 213 HOH HOH . H 4 HOH A 236 936 148 HOH HOH . H 4 HOH A 237 937 143 HOH HOH . H 4 HOH A 238 938 242 HOH HOH . H 4 HOH A 239 939 265 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 7.854 13.096 19.481 1 68.39 ? C1 EDO 602 A 1 HETATM 2 O O1 EDO . . . C 3 6.757 12.561 18.763 1 71.12 ? O1 EDO 602 A 1 HETATM 3 C C2 EDO . . . C 3 9.141 12.68 18.807 1 63.78 ? C2 EDO 602 A 1 HETATM 4 O O2 EDO . . . C 3 10.219 13.324 19.471 1 66.46 ? O2 EDO 602 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #