data_5O9P # _model_server_result.job_id lX5rE5e8AM0a8x0NYZHtVg _model_server_result.datetime_utc '2024-10-15 18:22:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o9p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5O9P # _exptl.entry_id 5O9P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5O9P _cell.length_a 50.067 _cell.length_b 70.953 _cell.length_c 150.99 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O9P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 89 A CYS 89 1_555 A SG CYS 118 A CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 231 A CYS 231 1_555 A SG CYS 367 A CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf3 A SG CYS 247 A CYS 247 1_555 A SG CYS 278 A CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 390 A CYS 390 1_555 A SG CYS 442 A CYS 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf5 A SG CYS 392 A CYS 392 1_555 A SG CYS 489 A CYS 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf6 A SG CYS 399 A CYS 399 1_555 A SG CYS 466 A CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf7 A SG CYS 419 A CYS 419 1_555 A SG CYS 424 A CYS 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 174 n n C1 C2 EDO sing 175 n n C1 H11 EDO sing 176 n n C1 H12 EDO sing 177 n n O1 HO1 EDO sing 178 n n C2 O2 EDO sing 179 n n C2 H21 EDO sing 180 n n C2 H22 EDO sing 181 n n O2 HO2 EDO sing 182 n n # _atom_sites.entry_id 5O9P _atom_sites.fract_transf_matrix[1][1] 0.019973 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006623 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9P8 A 1 601 1 9P8 DRG . C 3 EDO A 1 602 1 EDO EDO . D 4 HOH A 1 701 282 HOH HOH . D 4 HOH A 2 702 350 HOH HOH . D 4 HOH A 3 703 242 HOH HOH . D 4 HOH A 4 704 351 HOH HOH . D 4 HOH A 5 705 346 HOH HOH . D 4 HOH A 6 706 147 HOH HOH . D 4 HOH A 7 707 316 HOH HOH . D 4 HOH A 8 708 133 HOH HOH . D 4 HOH A 9 709 211 HOH HOH . D 4 HOH A 10 710 302 HOH HOH . D 4 HOH A 11 711 210 HOH HOH . D 4 HOH A 12 712 248 HOH HOH . D 4 HOH A 13 713 241 HOH HOH . D 4 HOH A 14 714 138 HOH HOH . D 4 HOH A 15 715 57 HOH HOH . D 4 HOH A 16 716 63 HOH HOH . D 4 HOH A 17 717 296 HOH HOH . D 4 HOH A 18 718 48 HOH HOH . D 4 HOH A 19 719 251 HOH HOH . D 4 HOH A 20 720 313 HOH HOH . D 4 HOH A 21 721 285 HOH HOH . D 4 HOH A 22 722 97 HOH HOH . D 4 HOH A 23 723 123 HOH HOH . D 4 HOH A 24 724 116 HOH HOH . D 4 HOH A 25 725 103 HOH HOH . D 4 HOH A 26 726 119 HOH HOH . D 4 HOH A 27 727 81 HOH HOH . D 4 HOH A 28 728 12 HOH HOH . D 4 HOH A 29 729 83 HOH HOH . D 4 HOH A 30 730 5 HOH HOH . D 4 HOH A 31 731 183 HOH HOH . D 4 HOH A 32 732 50 HOH HOH . D 4 HOH A 33 733 213 HOH HOH . D 4 HOH A 34 734 86 HOH HOH . D 4 HOH A 35 735 66 HOH HOH . D 4 HOH A 36 736 9 HOH HOH . D 4 HOH A 37 737 215 HOH HOH . D 4 HOH A 38 738 341 HOH HOH . D 4 HOH A 39 739 338 HOH HOH . D 4 HOH A 40 740 26 HOH HOH . D 4 HOH A 41 741 59 HOH HOH . D 4 HOH A 42 742 118 HOH HOH . D 4 HOH A 43 743 74 HOH HOH . D 4 HOH A 44 744 344 HOH HOH . D 4 HOH A 45 745 41 HOH HOH . D 4 HOH A 46 746 101 HOH HOH . D 4 HOH A 47 747 126 HOH HOH . D 4 HOH A 48 748 174 HOH HOH . D 4 HOH A 49 749 260 HOH HOH . D 4 HOH A 50 750 170 HOH HOH . D 4 HOH A 51 751 18 HOH HOH . D 4 HOH A 52 752 212 HOH HOH . D 4 HOH A 53 753 45 HOH HOH . D 4 HOH A 54 754 267 HOH HOH . D 4 HOH A 55 755 79 HOH HOH . D 4 HOH A 56 756 145 HOH HOH . D 4 HOH A 57 757 255 HOH HOH . D 4 HOH A 58 758 332 HOH HOH . D 4 HOH A 59 759 109 HOH HOH . D 4 HOH A 60 760 73 HOH HOH . D 4 HOH A 61 761 315 HOH HOH . D 4 HOH A 62 762 137 HOH HOH . D 4 HOH A 63 763 124 HOH HOH . D 4 HOH A 64 764 327 HOH HOH . D 4 HOH A 65 765 61 HOH HOH . D 4 HOH A 66 766 85 HOH HOH . D 4 HOH A 67 767 191 HOH HOH . D 4 HOH A 68 768 230 HOH HOH . D 4 HOH A 69 769 244 HOH HOH . D 4 HOH A 70 770 279 HOH HOH . D 4 HOH A 71 771 15 HOH HOH . D 4 HOH A 72 772 19 HOH HOH . D 4 HOH A 73 773 273 HOH HOH . D 4 HOH A 74 774 310 HOH HOH . D 4 HOH A 75 775 131 HOH HOH . D 4 HOH A 76 776 82 HOH HOH . D 4 HOH A 77 777 69 HOH HOH . D 4 HOH A 78 778 65 HOH HOH . D 4 HOH A 79 779 70 HOH HOH . D 4 HOH A 80 780 64 HOH HOH . D 4 HOH A 81 781 245 HOH HOH . D 4 HOH A 82 782 236 HOH HOH . D 4 HOH A 83 783 7 HOH HOH . D 4 HOH A 84 784 106 HOH HOH . D 4 HOH A 85 785 143 HOH HOH . D 4 HOH A 86 786 60 HOH HOH . D 4 HOH A 87 787 148 HOH HOH . D 4 HOH A 88 788 23 HOH HOH . D 4 HOH A 89 789 8 HOH HOH . D 4 HOH A 90 790 205 HOH HOH . D 4 HOH A 91 791 226 HOH HOH . D 4 HOH A 92 792 58 HOH HOH . D 4 HOH A 93 793 322 HOH HOH . D 4 HOH A 94 794 36 HOH HOH . D 4 HOH A 95 795 35 HOH HOH . D 4 HOH A 96 796 105 HOH HOH . D 4 HOH A 97 797 329 HOH HOH . D 4 HOH A 98 798 98 HOH HOH . D 4 HOH A 99 799 33 HOH HOH . D 4 HOH A 100 800 76 HOH HOH . D 4 HOH A 101 801 208 HOH HOH . D 4 HOH A 102 802 214 HOH HOH . D 4 HOH A 103 803 104 HOH HOH . D 4 HOH A 104 804 258 HOH HOH . D 4 HOH A 105 805 184 HOH HOH . D 4 HOH A 106 806 201 HOH HOH . D 4 HOH A 107 807 196 HOH HOH . D 4 HOH A 108 808 130 HOH HOH . D 4 HOH A 109 809 112 HOH HOH . D 4 HOH A 110 810 206 HOH HOH . D 4 HOH A 111 811 89 HOH HOH . D 4 HOH A 112 812 67 HOH HOH . D 4 HOH A 113 813 146 HOH HOH . D 4 HOH A 114 814 110 HOH HOH . D 4 HOH A 115 815 90 HOH HOH . D 4 HOH A 116 816 54 HOH HOH . D 4 HOH A 117 817 199 HOH HOH . D 4 HOH A 118 818 92 HOH HOH . D 4 HOH A 119 819 333 HOH HOH . D 4 HOH A 120 820 4 HOH HOH . D 4 HOH A 121 821 44 HOH HOH . D 4 HOH A 122 822 331 HOH HOH . D 4 HOH A 123 823 314 HOH HOH . D 4 HOH A 124 824 113 HOH HOH . D 4 HOH A 125 825 222 HOH HOH . D 4 HOH A 126 826 91 HOH HOH . D 4 HOH A 127 827 42 HOH HOH . D 4 HOH A 128 828 84 HOH HOH . D 4 HOH A 129 829 203 HOH HOH . D 4 HOH A 130 830 20 HOH HOH . D 4 HOH A 131 831 335 HOH HOH . D 4 HOH A 132 832 343 HOH HOH . D 4 HOH A 133 833 166 HOH HOH . D 4 HOH A 134 834 209 HOH HOH . D 4 HOH A 135 835 6 HOH HOH . D 4 HOH A 136 836 13 HOH HOH . D 4 HOH A 137 837 217 HOH HOH . D 4 HOH A 138 838 172 HOH HOH . D 4 HOH A 139 839 154 HOH HOH . D 4 HOH A 140 840 68 HOH HOH . D 4 HOH A 141 841 39 HOH HOH . D 4 HOH A 142 842 80 HOH HOH . D 4 HOH A 143 843 283 HOH HOH . D 4 HOH A 144 844 62 HOH HOH . D 4 HOH A 145 845 34 HOH HOH . D 4 HOH A 146 846 1 HOH HOH . D 4 HOH A 147 847 37 HOH HOH . D 4 HOH A 148 848 144 HOH HOH . D 4 HOH A 149 849 111 HOH HOH . D 4 HOH A 150 850 178 HOH HOH . D 4 HOH A 151 851 284 HOH HOH . D 4 HOH A 152 852 28 HOH HOH . D 4 HOH A 153 853 95 HOH HOH . D 4 HOH A 154 854 128 HOH HOH . D 4 HOH A 155 855 29 HOH HOH . D 4 HOH A 156 856 88 HOH HOH . D 4 HOH A 157 857 96 HOH HOH . D 4 HOH A 158 858 27 HOH HOH . D 4 HOH A 159 859 142 HOH HOH . D 4 HOH A 160 860 256 HOH HOH . D 4 HOH A 161 861 100 HOH HOH . D 4 HOH A 162 862 132 HOH HOH . D 4 HOH A 163 863 231 HOH HOH . D 4 HOH A 164 864 32 HOH HOH . D 4 HOH A 165 865 221 HOH HOH . D 4 HOH A 166 866 238 HOH HOH . D 4 HOH A 167 867 136 HOH HOH . D 4 HOH A 168 868 129 HOH HOH . D 4 HOH A 169 869 204 HOH HOH . D 4 HOH A 170 870 78 HOH HOH . D 4 HOH A 171 871 269 HOH HOH . D 4 HOH A 172 872 75 HOH HOH . D 4 HOH A 173 873 339 HOH HOH . D 4 HOH A 174 874 223 HOH HOH . D 4 HOH A 175 875 120 HOH HOH . D 4 HOH A 176 876 160 HOH HOH . D 4 HOH A 177 877 345 HOH HOH . D 4 HOH A 178 878 347 HOH HOH . D 4 HOH A 179 879 43 HOH HOH . D 4 HOH A 180 880 56 HOH HOH . D 4 HOH A 181 881 180 HOH HOH . D 4 HOH A 182 882 218 HOH HOH . D 4 HOH A 183 883 189 HOH HOH . D 4 HOH A 184 884 186 HOH HOH . D 4 HOH A 185 885 134 HOH HOH . D 4 HOH A 186 886 330 HOH HOH . D 4 HOH A 187 887 93 HOH HOH . D 4 HOH A 188 888 94 HOH HOH . D 4 HOH A 189 889 121 HOH HOH . D 4 HOH A 190 890 16 HOH HOH . D 4 HOH A 191 891 304 HOH HOH . D 4 HOH A 192 892 286 HOH HOH . D 4 HOH A 193 893 323 HOH HOH . D 4 HOH A 194 894 125 HOH HOH . D 4 HOH A 195 895 72 HOH HOH . D 4 HOH A 196 896 77 HOH HOH . D 4 HOH A 197 897 52 HOH HOH . D 4 HOH A 198 898 122 HOH HOH . D 4 HOH A 199 899 197 HOH HOH . D 4 HOH A 200 900 276 HOH HOH . D 4 HOH A 201 901 46 HOH HOH . D 4 HOH A 202 902 14 HOH HOH . D 4 HOH A 203 903 254 HOH HOH . D 4 HOH A 204 904 179 HOH HOH . D 4 HOH A 205 905 348 HOH HOH . D 4 HOH A 206 906 102 HOH HOH . D 4 HOH A 207 907 188 HOH HOH . D 4 HOH A 208 908 297 HOH HOH . D 4 HOH A 209 909 53 HOH HOH . D 4 HOH A 210 910 108 HOH HOH . D 4 HOH A 211 911 192 HOH HOH . D 4 HOH A 212 912 107 HOH HOH . D 4 HOH A 213 913 281 HOH HOH . D 4 HOH A 214 914 141 HOH HOH . D 4 HOH A 215 915 140 HOH HOH . D 4 HOH A 216 916 263 HOH HOH . D 4 HOH A 217 917 195 HOH HOH . D 4 HOH A 218 918 337 HOH HOH . D 4 HOH A 219 919 51 HOH HOH . D 4 HOH A 220 920 233 HOH HOH . D 4 HOH A 221 921 71 HOH HOH . D 4 HOH A 222 922 280 HOH HOH . D 4 HOH A 223 923 175 HOH HOH . D 4 HOH A 224 924 340 HOH HOH . D 4 HOH A 225 925 220 HOH HOH . D 4 HOH A 226 926 352 HOH HOH . D 4 HOH A 227 927 200 HOH HOH . D 4 HOH A 228 928 250 HOH HOH . D 4 HOH A 229 929 278 HOH HOH . D 4 HOH A 230 930 308 HOH HOH . D 4 HOH A 231 931 169 HOH HOH . D 4 HOH A 232 932 257 HOH HOH . D 4 HOH A 233 933 190 HOH HOH . D 4 HOH A 234 934 149 HOH HOH . D 4 HOH A 235 935 153 HOH HOH . D 4 HOH A 236 936 168 HOH HOH . D 4 HOH A 237 937 167 HOH HOH . D 4 HOH A 238 938 287 HOH HOH . D 4 HOH A 239 939 219 HOH HOH . D 4 HOH A 240 940 239 HOH HOH . D 4 HOH A 241 941 232 HOH HOH . D 4 HOH A 242 942 181 HOH HOH . D 4 HOH A 243 943 336 HOH HOH . D 4 HOH A 244 944 303 HOH HOH . D 4 HOH A 245 945 159 HOH HOH . D 4 HOH A 246 946 253 HOH HOH . D 4 HOH A 247 947 349 HOH HOH . D 4 HOH A 248 948 229 HOH HOH . D 4 HOH A 249 949 294 HOH HOH . D 4 HOH A 250 950 164 HOH HOH . D 4 HOH A 251 951 240 HOH HOH . D 4 HOH A 252 952 162 HOH HOH . D 4 HOH A 253 953 182 HOH HOH . D 4 HOH A 254 954 187 HOH HOH . D 4 HOH A 255 955 261 HOH HOH . D 4 HOH A 256 956 237 HOH HOH . D 4 HOH A 257 957 271 HOH HOH . D 4 HOH A 258 958 163 HOH HOH . D 4 HOH A 259 959 202 HOH HOH . D 4 HOH A 260 960 198 HOH HOH . D 4 HOH A 261 961 176 HOH HOH . D 4 HOH A 262 962 171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 8.504 -17.882 -12.504 1 45.43 ? C1 EDO 602 A 1 HETATM 2 O O1 EDO . . . C 3 9.626 -18.018 -13.38 1 46.9 ? O1 EDO 602 A 1 HETATM 3 C C2 EDO . . . C 3 7.559 -16.829 -13.064 1 44.83 ? C2 EDO 602 A 1 HETATM 4 O O2 EDO . . . C 3 8.087 -16.111 -14.194 1 43.44 ? O2 EDO 602 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #