data_5O9S
#
_model_server_result.job_id            eXa48p4E9h9yyCfqkRCkgw 
_model_server_result.datetime_utc      '2024-11-22 22:01:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5o9s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":101}' 
#
_entry.id    5O9S 
#
_exptl.entry_id    5O9S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     'Myristoylated peptide' 
_entity.formula_weight              228.371 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MYRISTIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5O9S 
_cell.length_a            58.022 
_cell.length_b            80.252 
_cell.length_c            178.147 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5O9S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,L,N 1 1 
B,D,H,I,J,K,M,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 L N N 
? 5 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C N GLY 1 C GLY 2 1_555 L C1 MYR . C MYR 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 D N GLY 1 D GLY 2 1_555 M C1 MYR . D MYR 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
#
_chem_comp.formula           'C14 H28 O2' 
_chem_comp.formula_weight    228.371 
_chem_comp.id                MYR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MYRISTIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 MYR doub 250 n n 
C1 O2 MYR sing 251 n n 
C1 C2 MYR sing 252 n n 
O2 HO2 MYR sing 253 n n 
C2 C3 MYR sing 254 n n 
C2 H21 MYR sing 255 n n 
C2 H22 MYR sing 256 n n 
C3 C4 MYR sing 257 n n 
C3 H31 MYR sing 258 n n 
C3 H32 MYR sing 259 n n 
C4 C5 MYR sing 260 n n 
C4 H41 MYR sing 261 n n 
C4 H42 MYR sing 262 n n 
C5 C6 MYR sing 263 n n 
C5 H51 MYR sing 264 n n 
C5 H52 MYR sing 265 n n 
C6 C7 MYR sing 266 n n 
C6 H61 MYR sing 267 n n 
C6 H62 MYR sing 268 n n 
C7 C8 MYR sing 269 n n 
C7 H71 MYR sing 270 n n 
C7 H72 MYR sing 271 n n 
C8 C9 MYR sing 272 n n 
C8 H81 MYR sing 273 n n 
C8 H82 MYR sing 274 n n 
C9 C10 MYR sing 275 n n 
C9 H91 MYR sing 276 n n 
C9 H92 MYR sing 277 n n 
C10 C11 MYR sing 278 n n 
C10 H101 MYR sing 279 n n 
C10 H102 MYR sing 280 n n 
C11 C12 MYR sing 281 n n 
C11 H111 MYR sing 282 n n 
C11 H112 MYR sing 283 n n 
C12 C13 MYR sing 284 n n 
C12 H121 MYR sing 285 n n 
C12 H122 MYR sing 286 n n 
C13 C14 MYR sing 287 n n 
C13 H131 MYR sing 288 n n 
C13 H132 MYR sing 289 n n 
C14 H141 MYR sing 290 n n 
C14 H142 MYR sing 291 n n 
C14 H143 MYR sing 292 n n 
#
_atom_sites.entry_id                     5O9S 
_atom_sites.fract_transf_matrix[1][1]    0.017235 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012461 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005613 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 501 3 GOL GOL . 
F 4 CL A 1 502 4 CL CL . 
G 3 GOL A 1 503 181 GOL GOL . 
H 3 GOL B 1 501 1 GOL GOL . 
I 4 CL B 1 502 5 CL CL . 
J 4 CL B 1 503 6 CL CL . 
K 3 GOL B 1 504 182 GOL GOL . 
L 5 MYR C 1 101 2 MYR GLM . 
M 5 MYR D 1 101 2 MYR GLM . 
N 6 HOH A 1 601 129 HOH HOH . 
N 6 HOH A 2 602 130 HOH HOH . 
N 6 HOH A 3 603 39 HOH HOH . 
N 6 HOH A 4 604 96 HOH HOH . 
N 6 HOH A 5 605 106 HOH HOH . 
N 6 HOH A 6 606 72 HOH HOH . 
N 6 HOH A 7 607 33 HOH HOH . 
N 6 HOH A 8 608 115 HOH HOH . 
N 6 HOH A 9 609 69 HOH HOH . 
N 6 HOH A 10 610 111 HOH HOH . 
N 6 HOH A 11 611 176 HOH HOH . 
N 6 HOH A 12 612 82 HOH HOH . 
N 6 HOH A 13 613 92 HOH HOH . 
N 6 HOH A 14 614 67 HOH HOH . 
N 6 HOH A 15 615 107 HOH HOH . 
N 6 HOH A 16 616 32 HOH HOH . 
N 6 HOH A 17 617 97 HOH HOH . 
N 6 HOH A 18 618 25 HOH HOH . 
N 6 HOH A 19 619 95 HOH HOH . 
N 6 HOH A 20 620 60 HOH HOH . 
N 6 HOH A 21 621 27 HOH HOH . 
N 6 HOH A 22 622 57 HOH HOH . 
N 6 HOH A 23 623 41 HOH HOH . 
N 6 HOH A 24 624 10 HOH HOH . 
N 6 HOH A 25 625 81 HOH HOH . 
N 6 HOH A 26 626 9 HOH HOH . 
N 6 HOH A 27 627 156 HOH HOH . 
N 6 HOH A 28 628 8 HOH HOH . 
N 6 HOH A 29 629 38 HOH HOH . 
N 6 HOH A 30 630 36 HOH HOH . 
N 6 HOH A 31 631 18 HOH HOH . 
N 6 HOH A 32 632 20 HOH HOH . 
N 6 HOH A 33 633 66 HOH HOH . 
N 6 HOH A 34 634 11 HOH HOH . 
N 6 HOH A 35 635 17 HOH HOH . 
N 6 HOH A 36 636 102 HOH HOH . 
N 6 HOH A 37 637 16 HOH HOH . 
N 6 HOH A 38 638 174 HOH HOH . 
N 6 HOH A 39 639 161 HOH HOH . 
N 6 HOH A 40 640 119 HOH HOH . 
N 6 HOH A 41 641 47 HOH HOH . 
N 6 HOH A 42 642 145 HOH HOH . 
N 6 HOH A 43 643 113 HOH HOH . 
N 6 HOH A 44 644 53 HOH HOH . 
N 6 HOH A 45 645 7 HOH HOH . 
N 6 HOH A 46 646 76 HOH HOH . 
N 6 HOH A 47 647 158 HOH HOH . 
N 6 HOH A 48 648 23 HOH HOH . 
N 6 HOH A 49 649 157 HOH HOH . 
N 6 HOH A 50 650 87 HOH HOH . 
N 6 HOH A 51 651 50 HOH HOH . 
N 6 HOH A 52 652 93 HOH HOH . 
N 6 HOH A 53 653 159 HOH HOH . 
N 6 HOH A 54 654 86 HOH HOH . 
N 6 HOH A 55 655 42 HOH HOH . 
N 6 HOH A 56 656 160 HOH HOH . 
N 6 HOH A 57 657 136 HOH HOH . 
N 6 HOH A 58 658 90 HOH HOH . 
N 6 HOH A 59 659 35 HOH HOH . 
N 6 HOH A 60 660 137 HOH HOH . 
N 6 HOH A 61 661 40 HOH HOH . 
N 6 HOH A 62 662 84 HOH HOH . 
N 6 HOH A 63 663 68 HOH HOH . 
N 6 HOH A 64 664 94 HOH HOH . 
N 6 HOH A 65 665 139 HOH HOH . 
N 6 HOH A 66 666 110 HOH HOH . 
N 6 HOH A 67 667 121 HOH HOH . 
N 6 HOH A 68 668 132 HOH HOH . 
N 6 HOH A 69 669 175 HOH HOH . 
N 6 HOH A 70 670 140 HOH HOH . 
N 6 HOH A 71 671 88 HOH HOH . 
N 6 HOH A 72 672 135 HOH HOH . 
N 6 HOH A 73 673 170 HOH HOH . 
N 6 HOH A 74 674 154 HOH HOH . 
N 6 HOH A 75 675 163 HOH HOH . 
N 6 HOH A 76 676 21 HOH HOH . 
N 6 HOH A 77 677 83 HOH HOH . 
N 6 HOH A 78 678 149 HOH HOH . 
N 6 HOH A 79 679 141 HOH HOH . 
N 6 HOH A 80 680 148 HOH HOH . 
N 6 HOH A 81 681 167 HOH HOH . 
N 6 HOH A 82 682 142 HOH HOH . 
N 6 HOH A 83 683 78 HOH HOH . 
N 6 HOH A 84 684 143 HOH HOH . 
N 6 HOH A 85 685 168 HOH HOH . 
N 6 HOH A 86 686 173 HOH HOH . 
N 6 HOH A 87 687 128 HOH HOH . 
N 6 HOH A 88 688 133 HOH HOH . 
O 6 HOH B 1 601 114 HOH HOH . 
O 6 HOH B 2 602 19 HOH HOH . 
O 6 HOH B 3 603 120 HOH HOH . 
O 6 HOH B 4 604 29 HOH HOH . 
O 6 HOH B 5 605 103 HOH HOH . 
O 6 HOH B 6 606 24 HOH HOH . 
O 6 HOH B 7 607 164 HOH HOH . 
O 6 HOH B 8 608 52 HOH HOH . 
O 6 HOH B 9 609 146 HOH HOH . 
O 6 HOH B 10 610 58 HOH HOH . 
O 6 HOH B 11 611 85 HOH HOH . 
O 6 HOH B 12 612 169 HOH HOH . 
O 6 HOH B 13 613 22 HOH HOH . 
O 6 HOH B 14 614 109 HOH HOH . 
O 6 HOH B 15 615 51 HOH HOH . 
O 6 HOH B 16 616 46 HOH HOH . 
O 6 HOH B 17 617 31 HOH HOH . 
O 6 HOH B 18 618 13 HOH HOH . 
O 6 HOH B 19 619 62 HOH HOH . 
O 6 HOH B 20 620 70 HOH HOH . 
O 6 HOH B 21 621 61 HOH HOH . 
O 6 HOH B 22 622 116 HOH HOH . 
O 6 HOH B 23 623 105 HOH HOH . 
O 6 HOH B 24 624 126 HOH HOH . 
O 6 HOH B 25 625 12 HOH HOH . 
O 6 HOH B 26 626 123 HOH HOH . 
O 6 HOH B 27 627 171 HOH HOH . 
O 6 HOH B 28 628 71 HOH HOH . 
O 6 HOH B 29 629 73 HOH HOH . 
O 6 HOH B 30 630 153 HOH HOH . 
O 6 HOH B 31 631 37 HOH HOH . 
O 6 HOH B 32 632 101 HOH HOH . 
O 6 HOH B 33 633 49 HOH HOH . 
O 6 HOH B 34 634 59 HOH HOH . 
O 6 HOH B 35 635 147 HOH HOH . 
O 6 HOH B 36 636 48 HOH HOH . 
O 6 HOH B 37 637 14 HOH HOH . 
O 6 HOH B 38 638 152 HOH HOH . 
O 6 HOH B 39 639 56 HOH HOH . 
O 6 HOH B 40 640 65 HOH HOH . 
O 6 HOH B 41 641 15 HOH HOH . 
O 6 HOH B 42 642 63 HOH HOH . 
O 6 HOH B 43 643 75 HOH HOH . 
O 6 HOH B 44 644 98 HOH HOH . 
O 6 HOH B 45 645 55 HOH HOH . 
O 6 HOH B 46 646 43 HOH HOH . 
O 6 HOH B 47 647 64 HOH HOH . 
O 6 HOH B 48 648 108 HOH HOH . 
O 6 HOH B 49 649 30 HOH HOH . 
O 6 HOH B 50 650 104 HOH HOH . 
O 6 HOH B 51 651 165 HOH HOH . 
O 6 HOH B 52 652 131 HOH HOH . 
O 6 HOH B 53 653 117 HOH HOH . 
O 6 HOH B 54 654 28 HOH HOH . 
O 6 HOH B 55 655 79 HOH HOH . 
O 6 HOH B 56 656 127 HOH HOH . 
O 6 HOH B 57 657 122 HOH HOH . 
O 6 HOH B 58 658 91 HOH HOH . 
O 6 HOH B 59 659 162 HOH HOH . 
O 6 HOH B 60 660 45 HOH HOH . 
O 6 HOH B 61 661 155 HOH HOH . 
O 6 HOH B 62 662 134 HOH HOH . 
O 6 HOH B 63 663 99 HOH HOH . 
O 6 HOH B 64 664 124 HOH HOH . 
O 6 HOH B 65 665 118 HOH HOH . 
O 6 HOH B 66 666 125 HOH HOH . 
O 6 HOH B 67 667 112 HOH HOH . 
O 6 HOH B 68 668 54 HOH HOH . 
O 6 HOH B 69 669 26 HOH HOH . 
O 6 HOH B 70 670 179 HOH HOH . 
O 6 HOH B 71 671 34 HOH HOH . 
O 6 HOH B 72 672 144 HOH HOH . 
O 6 HOH B 73 673 151 HOH HOH . 
O 6 HOH B 74 674 80 HOH HOH . 
O 6 HOH B 75 675 44 HOH HOH . 
O 6 HOH B 76 676 166 HOH HOH . 
O 6 HOH B 77 677 74 HOH HOH . 
O 6 HOH B 78 678 89 HOH HOH . 
O 6 HOH B 79 679 77 HOH HOH . 
O 6 HOH B 80 680 150 HOH HOH . 
O 6 HOH B 81 681 138 HOH HOH . 
O 6 HOH B 82 682 180 HOH HOH . 
O 6 HOH B 83 683 178 HOH HOH . 
O 6 HOH B 84 684 100 HOH HOH . 
O 6 HOH B 85 685 172 HOH HOH . 
P 6 HOH D 1 201 177 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MYR . . . M 5 -17.38 -18.891 77.501 1 16.9 ? C1 MYR 101 D 1 
HETATM 2 O O1 MYR . . . M 5 -17.79 -17.741 77.346 1 15.05 ? O1 MYR 101 D 1 
HETATM 3 C C2 MYR . . . M 5 -18.099 -20.099 76.887 1 20.19 ? C2 MYR 101 D 1 
HETATM 4 C C3 MYR . . . M 5 -19.615 -19.878 76.822 1 17.69 ? C3 MYR 101 D 1 
HETATM 5 C C4 MYR . . . M 5 -20.277 -21.143 76.259 1 16.95 ? C4 MYR 101 D 1 
HETATM 6 C C5 MYR . . . M 5 -21.706 -20.837 75.799 1 17.53 ? C5 MYR 101 D 1 
HETATM 7 C C6 MYR . . . M 5 -22.274 -22.045 75.048 1 16.52 ? C6 MYR 101 D 1 
HETATM 8 C C7 MYR . . . M 5 -21.831 -22.009 73.58 1 13.88 ? C7 MYR 101 D 1 
HETATM 9 C C8 MYR . . . M 5 -22.323 -23.278 72.879 1 13.9 ? C8 MYR 101 D 1 
HETATM 10 C C9 MYR . . . M 5 -21.977 -23.226 71.39 1 11.06 ? C9 MYR 101 D 1 
HETATM 11 C C10 MYR . . . M 5 -22.846 -22.178 70.693 1 11.7 ? C10 MYR 101 D 1 
HETATM 12 C C11 MYR . . . M 5 -22.569 -22.192 69.187 1 12.55 ? C11 MYR 101 D 1 
HETATM 13 C C12 MYR . . . M 5 -22.777 -23.6 68.618 1 11.16 ? C12 MYR 101 D 1 
HETATM 14 C C13 MYR . . . M 5 -22.836 -23.519 67.088 1 12.73 ? C13 MYR 101 D 1 
HETATM 15 C C14 MYR . . . M 5 -22.546 -24.887 66.469 1 9.82 ? C14 MYR 101 D 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#