data_5O9S # _model_server_result.job_id znbptDjzFIU_eh_E-74dfw _model_server_result.datetime_utc '2024-11-22 22:30:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5o9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":503}' # _entry.id 5O9S # _exptl.entry_id 5O9S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5O9S _cell.length_a 58.022 _cell.length_b 80.252 _cell.length_c 178.147 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O9S _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,L,N 1 1 B,D,H,I,J,K,M,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 H N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C N GLY 1 C GLY 2 1_555 L C1 MYR . C MYR 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 D N GLY 1 D GLY 2 1_555 M C1 MYR . D MYR 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5O9S _atom_sites.fract_transf_matrix[1][1] 0.017235 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012461 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 501 3 GOL GOL . F 4 CL A 1 502 4 CL CL . G 3 GOL A 1 503 181 GOL GOL . H 3 GOL B 1 501 1 GOL GOL . I 4 CL B 1 502 5 CL CL . J 4 CL B 1 503 6 CL CL . K 3 GOL B 1 504 182 GOL GOL . L 5 MYR C 1 101 2 MYR GLM . M 5 MYR D 1 101 2 MYR GLM . N 6 HOH A 1 601 129 HOH HOH . N 6 HOH A 2 602 130 HOH HOH . N 6 HOH A 3 603 39 HOH HOH . N 6 HOH A 4 604 96 HOH HOH . N 6 HOH A 5 605 106 HOH HOH . N 6 HOH A 6 606 72 HOH HOH . N 6 HOH A 7 607 33 HOH HOH . N 6 HOH A 8 608 115 HOH HOH . N 6 HOH A 9 609 69 HOH HOH . N 6 HOH A 10 610 111 HOH HOH . N 6 HOH A 11 611 176 HOH HOH . N 6 HOH A 12 612 82 HOH HOH . N 6 HOH A 13 613 92 HOH HOH . N 6 HOH A 14 614 67 HOH HOH . N 6 HOH A 15 615 107 HOH HOH . N 6 HOH A 16 616 32 HOH HOH . N 6 HOH A 17 617 97 HOH HOH . N 6 HOH A 18 618 25 HOH HOH . N 6 HOH A 19 619 95 HOH HOH . N 6 HOH A 20 620 60 HOH HOH . N 6 HOH A 21 621 27 HOH HOH . N 6 HOH A 22 622 57 HOH HOH . N 6 HOH A 23 623 41 HOH HOH . N 6 HOH A 24 624 10 HOH HOH . N 6 HOH A 25 625 81 HOH HOH . N 6 HOH A 26 626 9 HOH HOH . N 6 HOH A 27 627 156 HOH HOH . N 6 HOH A 28 628 8 HOH HOH . N 6 HOH A 29 629 38 HOH HOH . N 6 HOH A 30 630 36 HOH HOH . N 6 HOH A 31 631 18 HOH HOH . N 6 HOH A 32 632 20 HOH HOH . N 6 HOH A 33 633 66 HOH HOH . N 6 HOH A 34 634 11 HOH HOH . N 6 HOH A 35 635 17 HOH HOH . N 6 HOH A 36 636 102 HOH HOH . N 6 HOH A 37 637 16 HOH HOH . N 6 HOH A 38 638 174 HOH HOH . N 6 HOH A 39 639 161 HOH HOH . N 6 HOH A 40 640 119 HOH HOH . N 6 HOH A 41 641 47 HOH HOH . N 6 HOH A 42 642 145 HOH HOH . N 6 HOH A 43 643 113 HOH HOH . N 6 HOH A 44 644 53 HOH HOH . N 6 HOH A 45 645 7 HOH HOH . N 6 HOH A 46 646 76 HOH HOH . N 6 HOH A 47 647 158 HOH HOH . N 6 HOH A 48 648 23 HOH HOH . N 6 HOH A 49 649 157 HOH HOH . N 6 HOH A 50 650 87 HOH HOH . N 6 HOH A 51 651 50 HOH HOH . N 6 HOH A 52 652 93 HOH HOH . N 6 HOH A 53 653 159 HOH HOH . N 6 HOH A 54 654 86 HOH HOH . N 6 HOH A 55 655 42 HOH HOH . N 6 HOH A 56 656 160 HOH HOH . N 6 HOH A 57 657 136 HOH HOH . N 6 HOH A 58 658 90 HOH HOH . N 6 HOH A 59 659 35 HOH HOH . N 6 HOH A 60 660 137 HOH HOH . N 6 HOH A 61 661 40 HOH HOH . N 6 HOH A 62 662 84 HOH HOH . N 6 HOH A 63 663 68 HOH HOH . N 6 HOH A 64 664 94 HOH HOH . N 6 HOH A 65 665 139 HOH HOH . N 6 HOH A 66 666 110 HOH HOH . N 6 HOH A 67 667 121 HOH HOH . N 6 HOH A 68 668 132 HOH HOH . N 6 HOH A 69 669 175 HOH HOH . N 6 HOH A 70 670 140 HOH HOH . N 6 HOH A 71 671 88 HOH HOH . N 6 HOH A 72 672 135 HOH HOH . N 6 HOH A 73 673 170 HOH HOH . N 6 HOH A 74 674 154 HOH HOH . N 6 HOH A 75 675 163 HOH HOH . N 6 HOH A 76 676 21 HOH HOH . N 6 HOH A 77 677 83 HOH HOH . N 6 HOH A 78 678 149 HOH HOH . N 6 HOH A 79 679 141 HOH HOH . N 6 HOH A 80 680 148 HOH HOH . N 6 HOH A 81 681 167 HOH HOH . N 6 HOH A 82 682 142 HOH HOH . N 6 HOH A 83 683 78 HOH HOH . N 6 HOH A 84 684 143 HOH HOH . N 6 HOH A 85 685 168 HOH HOH . N 6 HOH A 86 686 173 HOH HOH . N 6 HOH A 87 687 128 HOH HOH . N 6 HOH A 88 688 133 HOH HOH . O 6 HOH B 1 601 114 HOH HOH . O 6 HOH B 2 602 19 HOH HOH . O 6 HOH B 3 603 120 HOH HOH . O 6 HOH B 4 604 29 HOH HOH . O 6 HOH B 5 605 103 HOH HOH . O 6 HOH B 6 606 24 HOH HOH . O 6 HOH B 7 607 164 HOH HOH . O 6 HOH B 8 608 52 HOH HOH . O 6 HOH B 9 609 146 HOH HOH . O 6 HOH B 10 610 58 HOH HOH . O 6 HOH B 11 611 85 HOH HOH . O 6 HOH B 12 612 169 HOH HOH . O 6 HOH B 13 613 22 HOH HOH . O 6 HOH B 14 614 109 HOH HOH . O 6 HOH B 15 615 51 HOH HOH . O 6 HOH B 16 616 46 HOH HOH . O 6 HOH B 17 617 31 HOH HOH . O 6 HOH B 18 618 13 HOH HOH . O 6 HOH B 19 619 62 HOH HOH . O 6 HOH B 20 620 70 HOH HOH . O 6 HOH B 21 621 61 HOH HOH . O 6 HOH B 22 622 116 HOH HOH . O 6 HOH B 23 623 105 HOH HOH . O 6 HOH B 24 624 126 HOH HOH . O 6 HOH B 25 625 12 HOH HOH . O 6 HOH B 26 626 123 HOH HOH . O 6 HOH B 27 627 171 HOH HOH . O 6 HOH B 28 628 71 HOH HOH . O 6 HOH B 29 629 73 HOH HOH . O 6 HOH B 30 630 153 HOH HOH . O 6 HOH B 31 631 37 HOH HOH . O 6 HOH B 32 632 101 HOH HOH . O 6 HOH B 33 633 49 HOH HOH . O 6 HOH B 34 634 59 HOH HOH . O 6 HOH B 35 635 147 HOH HOH . O 6 HOH B 36 636 48 HOH HOH . O 6 HOH B 37 637 14 HOH HOH . O 6 HOH B 38 638 152 HOH HOH . O 6 HOH B 39 639 56 HOH HOH . O 6 HOH B 40 640 65 HOH HOH . O 6 HOH B 41 641 15 HOH HOH . O 6 HOH B 42 642 63 HOH HOH . O 6 HOH B 43 643 75 HOH HOH . O 6 HOH B 44 644 98 HOH HOH . O 6 HOH B 45 645 55 HOH HOH . O 6 HOH B 46 646 43 HOH HOH . O 6 HOH B 47 647 64 HOH HOH . O 6 HOH B 48 648 108 HOH HOH . O 6 HOH B 49 649 30 HOH HOH . O 6 HOH B 50 650 104 HOH HOH . O 6 HOH B 51 651 165 HOH HOH . O 6 HOH B 52 652 131 HOH HOH . O 6 HOH B 53 653 117 HOH HOH . O 6 HOH B 54 654 28 HOH HOH . O 6 HOH B 55 655 79 HOH HOH . O 6 HOH B 56 656 127 HOH HOH . O 6 HOH B 57 657 122 HOH HOH . O 6 HOH B 58 658 91 HOH HOH . O 6 HOH B 59 659 162 HOH HOH . O 6 HOH B 60 660 45 HOH HOH . O 6 HOH B 61 661 155 HOH HOH . O 6 HOH B 62 662 134 HOH HOH . O 6 HOH B 63 663 99 HOH HOH . O 6 HOH B 64 664 124 HOH HOH . O 6 HOH B 65 665 118 HOH HOH . O 6 HOH B 66 666 125 HOH HOH . O 6 HOH B 67 667 112 HOH HOH . O 6 HOH B 68 668 54 HOH HOH . O 6 HOH B 69 669 26 HOH HOH . O 6 HOH B 70 670 179 HOH HOH . O 6 HOH B 71 671 34 HOH HOH . O 6 HOH B 72 672 144 HOH HOH . O 6 HOH B 73 673 151 HOH HOH . O 6 HOH B 74 674 80 HOH HOH . O 6 HOH B 75 675 44 HOH HOH . O 6 HOH B 76 676 166 HOH HOH . O 6 HOH B 77 677 74 HOH HOH . O 6 HOH B 78 678 89 HOH HOH . O 6 HOH B 79 679 77 HOH HOH . O 6 HOH B 80 680 150 HOH HOH . O 6 HOH B 81 681 138 HOH HOH . O 6 HOH B 82 682 180 HOH HOH . O 6 HOH B 83 683 178 HOH HOH . O 6 HOH B 84 684 100 HOH HOH . O 6 HOH B 85 685 172 HOH HOH . P 6 HOH D 1 201 177 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 -21.087 -21.021 42.663 1 31.06 ? C1 GOL 503 A 1 HETATM 2 O O1 GOL . . . G 3 -19.939 -20.609 41.953 1 43.63 ? O1 GOL 503 A 1 HETATM 3 C C2 GOL . . . G 3 -21.303 -22.509 42.427 1 39.18 ? C2 GOL 503 A 1 HETATM 4 O O2 GOL . . . G 3 -22.359 -22.703 41.512 1 37.9 ? O2 GOL 503 A 1 HETATM 5 C C3 GOL . . . G 3 -21.642 -23.204 43.738 1 39.97 ? C3 GOL 503 A 1 HETATM 6 O O3 GOL . . . G 3 -20.502 -23.234 44.569 1 28.55 ? O3 GOL 503 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #