data_5OA0 # _model_server_result.job_id 7w9xrhFkrdndQHRHUEqClw _model_server_result.datetime_utc '2024-11-05 11:42:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oa0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":303}' # _entry.id 5OA0 # _exptl.entry_id 5OA0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5OA0 _cell.length_a 74.87 _cell.length_b 74.87 _cell.length_c 185.425 _cell.Z_PDB 15 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OA0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 P N N ? 4 Q N N ? 4 S N N ? 4 T N N ? 4 V N N ? 4 W N N ? 4 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 144 A CYS 144 1_555 A SG CYS 157 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf2 A SG CYS 207 A CYS 207 1_555 A SG CYS 208 A CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? disulf ? disulf3 B SG CYS 144 B CYS 144 1_555 B SG CYS 157 B CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf4 B SG CYS 207 B CYS 207 1_555 B SG CYS 208 B CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf5 C SG CYS 144 C CYS 144 1_555 C SG CYS 157 C CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf6 C SG CYS 207 C CYS 207 1_555 C SG CYS 208 C CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? disulf ? disulf7 D SG CYS 144 D CYS 144 1_555 D SG CYS 157 D CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf8 D SG CYS 207 D CYS 207 1_555 D SG CYS 208 D CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? disulf ? disulf9 E SG CYS 144 E CYS 144 1_555 E SG CYS 157 E CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? disulf ? disulf10 E SG CYS 207 E CYS 207 1_555 E SG CYS 208 E CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? covale ? covale1 A ND2 ASN 91 A ASN 91 1_555 G C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 B ND2 ASN 91 B ASN 91 1_555 J C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5OA0 _atom_sites.fract_transf_matrix[1][1] 0.013357 _atom_sites.fract_transf_matrix[1][2] 0.007711 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015423 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005393 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 SY9 A 1 601 601 SY9 SY9 . G 3 NAG A 1 602 602 NAG NAG . H 4 EDO A 1 603 603 EDO EDO . I 4 EDO A 1 604 604 EDO EDO . J 3 NAG B 1 301 602 NAG NAG . K 4 EDO B 1 302 603 EDO EDO . L 4 EDO B 1 303 604 EDO EDO . M 4 EDO B 1 304 1 EDO EDO . N 2 SY9 C 1 601 601 SY9 SY9 . O 2 SY9 C 1 602 601 SY9 SY9 . P 4 EDO C 1 603 603 EDO EDO . Q 4 EDO C 1 604 604 EDO EDO . R 2 SY9 D 1 601 601 SY9 SY9 . S 4 EDO D 1 602 603 EDO EDO . T 4 EDO D 1 603 604 EDO EDO . U 2 SY9 E 1 601 601 SY9 SY9 . V 4 EDO E 1 602 603 EDO EDO . W 4 EDO E 1 603 604 EDO EDO . X 4 EDO E 1 604 605 EDO EDO . Y 5 HOH A 1 701 21 HOH HOH . Y 5 HOH A 2 702 15 HOH HOH . Y 5 HOH A 3 703 87 HOH HOH . Y 5 HOH A 4 704 112 HOH HOH . Y 5 HOH A 5 705 63 HOH HOH . Y 5 HOH A 6 706 4 HOH HOH . Y 5 HOH A 7 707 7 HOH HOH . Y 5 HOH A 8 708 18 HOH HOH . Y 5 HOH A 9 709 79 HOH HOH . Y 5 HOH A 10 710 65 HOH HOH . Y 5 HOH A 11 711 46 HOH HOH . Y 5 HOH A 12 712 22 HOH HOH . Y 5 HOH A 13 713 55 HOH HOH . Y 5 HOH A 14 714 60 HOH HOH . Y 5 HOH A 15 715 71 HOH HOH . Y 5 HOH A 16 716 49 HOH HOH . Y 5 HOH A 17 717 99 HOH HOH . Y 5 HOH A 18 718 44 HOH HOH . Y 5 HOH A 19 719 5 HOH HOH . Y 5 HOH A 20 720 1 HOH HOH . Y 5 HOH A 21 721 57 HOH HOH . Y 5 HOH A 22 722 31 HOH HOH . Y 5 HOH A 23 723 100 HOH HOH . Y 5 HOH A 24 724 2 HOH HOH . Y 5 HOH A 25 725 45 HOH HOH . Y 5 HOH A 26 726 38 HOH HOH . Y 5 HOH A 27 727 3 HOH HOH . Y 5 HOH A 28 728 103 HOH HOH . Z 5 HOH B 1 401 104 HOH HOH . Z 5 HOH B 2 402 20 HOH HOH . Z 5 HOH B 3 403 85 HOH HOH . Z 5 HOH B 4 404 84 HOH HOH . Z 5 HOH B 5 405 91 HOH HOH . Z 5 HOH B 6 406 10 HOH HOH . Z 5 HOH B 7 407 69 HOH HOH . Z 5 HOH B 8 408 33 HOH HOH . Z 5 HOH B 9 409 81 HOH HOH . Z 5 HOH B 10 410 77 HOH HOH . Z 5 HOH B 11 411 53 HOH HOH . Z 5 HOH B 12 412 36 HOH HOH . Z 5 HOH B 13 413 41 HOH HOH . Z 5 HOH B 14 414 62 HOH HOH . Z 5 HOH B 15 415 102 HOH HOH . Z 5 HOH B 16 416 98 HOH HOH . Z 5 HOH B 17 417 61 HOH HOH . Z 5 HOH B 18 418 47 HOH HOH . Z 5 HOH B 19 419 35 HOH HOH . Z 5 HOH B 20 420 92 HOH HOH . Z 5 HOH B 21 421 24 HOH HOH . AA 5 HOH C 1 701 110 HOH HOH . AA 5 HOH C 2 702 17 HOH HOH . AA 5 HOH C 3 703 80 HOH HOH . AA 5 HOH C 4 704 106 HOH HOH . AA 5 HOH C 5 705 66 HOH HOH . AA 5 HOH C 6 706 14 HOH HOH . AA 5 HOH C 7 707 64 HOH HOH . AA 5 HOH C 8 708 73 HOH HOH . AA 5 HOH C 9 709 27 HOH HOH . AA 5 HOH C 10 710 28 HOH HOH . AA 5 HOH C 11 711 48 HOH HOH . AA 5 HOH C 12 712 42 HOH HOH . AA 5 HOH C 13 713 54 HOH HOH . AA 5 HOH C 14 714 58 HOH HOH . AA 5 HOH C 15 715 78 HOH HOH . BA 5 HOH D 1 701 82 HOH HOH . BA 5 HOH D 2 702 93 HOH HOH . BA 5 HOH D 3 703 29 HOH HOH . BA 5 HOH D 4 704 67 HOH HOH . BA 5 HOH D 5 705 72 HOH HOH . BA 5 HOH D 6 706 9 HOH HOH . BA 5 HOH D 7 707 86 HOH HOH . BA 5 HOH D 8 708 111 HOH HOH . BA 5 HOH D 9 709 11 HOH HOH . BA 5 HOH D 10 710 26 HOH HOH . BA 5 HOH D 11 711 34 HOH HOH . BA 5 HOH D 12 712 32 HOH HOH . BA 5 HOH D 13 713 43 HOH HOH . BA 5 HOH D 14 714 117 HOH HOH . BA 5 HOH D 15 715 25 HOH HOH . BA 5 HOH D 16 716 51 HOH HOH . BA 5 HOH D 17 717 75 HOH HOH . BA 5 HOH D 18 718 6 HOH HOH . BA 5 HOH D 19 719 116 HOH HOH . BA 5 HOH D 20 720 101 HOH HOH . BA 5 HOH D 21 721 59 HOH HOH . BA 5 HOH D 22 722 37 HOH HOH . CA 5 HOH E 1 701 107 HOH HOH . CA 5 HOH E 2 702 105 HOH HOH . CA 5 HOH E 3 703 13 HOH HOH . CA 5 HOH E 4 704 88 HOH HOH . CA 5 HOH E 5 705 95 HOH HOH . CA 5 HOH E 6 706 70 HOH HOH . CA 5 HOH E 7 707 83 HOH HOH . CA 5 HOH E 8 708 94 HOH HOH . CA 5 HOH E 9 709 30 HOH HOH . CA 5 HOH E 10 710 113 HOH HOH . CA 5 HOH E 11 711 76 HOH HOH . CA 5 HOH E 12 712 16 HOH HOH . CA 5 HOH E 13 713 50 HOH HOH . CA 5 HOH E 14 714 68 HOH HOH . CA 5 HOH E 15 715 74 HOH HOH . CA 5 HOH E 16 716 8 HOH HOH . CA 5 HOH E 17 717 23 HOH HOH . CA 5 HOH E 18 718 40 HOH HOH . CA 5 HOH E 19 719 56 HOH HOH . CA 5 HOH E 20 720 97 HOH HOH . CA 5 HOH E 21 721 39 HOH HOH . CA 5 HOH E 22 722 52 HOH HOH . CA 5 HOH E 23 723 90 HOH HOH . CA 5 HOH E 24 724 96 HOH HOH . CA 5 HOH E 25 725 19 HOH HOH . CA 5 HOH E 26 726 12 HOH HOH . CA 5 HOH E 27 727 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . L 4 -8.288 16.549 -9.746 1 44.56 ? C1 EDO 303 B 1 HETATM 2 O O1 EDO . . . L 4 -8.547 15.357 -9.052 1 42.37 ? O1 EDO 303 B 1 HETATM 3 C C2 EDO . . . L 4 -8.308 16.241 -11.239 1 43.06 ? C2 EDO 303 B 1 HETATM 4 O O2 EDO . . . L 4 -7.684 17.374 -11.869 1 47.77 ? O2 EDO 303 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #