data_5OA0 # _model_server_result.job_id Kf4RIilDLTijoo-kLQ0Jig _model_server_result.datetime_utc '2024-11-22 12:39:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oa0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":601}' # _entry.id 5OA0 # _exptl.entry_id 5OA0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 334.412 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STRYCHNINE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5OA0 _cell.length_a 74.87 _cell.length_b 74.87 _cell.length_c 185.425 _cell.Z_PDB 15 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OA0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 N N N ? 2 O N N ? 2 R N N ? 2 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 144 A CYS 144 1_555 A SG CYS 157 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf2 A SG CYS 207 A CYS 207 1_555 A SG CYS 208 A CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? disulf ? disulf3 B SG CYS 144 B CYS 144 1_555 B SG CYS 157 B CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf4 B SG CYS 207 B CYS 207 1_555 B SG CYS 208 B CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf5 C SG CYS 144 C CYS 144 1_555 C SG CYS 157 C CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf6 C SG CYS 207 C CYS 207 1_555 C SG CYS 208 C CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? disulf ? disulf7 D SG CYS 144 D CYS 144 1_555 D SG CYS 157 D CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf8 D SG CYS 207 D CYS 207 1_555 D SG CYS 208 D CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? disulf ? disulf9 E SG CYS 144 E CYS 144 1_555 E SG CYS 157 E CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? disulf ? disulf10 E SG CYS 207 E CYS 207 1_555 E SG CYS 208 E CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? covale ? covale1 A ND2 ASN 91 A ASN 91 1_555 G C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 B ND2 ASN 91 B ASN 91 1_555 J C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? # _chem_comp.formula 'C21 H22 N2 O2' _chem_comp.formula_weight 334.412 _chem_comp.id SY9 _chem_comp.mon_nstd_flag . _chem_comp.name STRYCHNINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAV CAU SY9 sing 329 n n CAV CAG SY9 sing 330 n n CAV NAY SY9 sing 331 n n CAU CAT SY9 sing 332 n n CAT CAN SY9 sing 333 n n CAT CAR SY9 sing 334 n n CAN CAK SY9 sing 335 n n CAN CAM SY9 sing 336 n n CAK NAH SY9 sing 337 n n CAK CAG SY9 sing 338 n n NAH CAA SY9 sing 339 n n NAH CAI SY9 sing 340 n n CAA CAF SY9 sing 341 n y CAA CAB SY9 doub 342 n y CAF CAE SY9 doub 343 n y CAE CAD SY9 sing 344 n y CAD CAC SY9 doub 345 n y CAC CAB SY9 sing 346 n y CAB CAG SY9 sing 347 n n CAG CAW SY9 sing 348 n n CAW CAX SY9 sing 349 n n CAX NAY SY9 sing 350 n n NAY CAS SY9 sing 351 n n CAS CAR SY9 sing 352 n n CAR CAQ SY9 doub 353 n n CAQ CAP SY9 sing 354 n n CAP OAO SY9 sing 355 n n OAO CAM SY9 sing 356 n n CAM CAL SY9 sing 357 n n CAL CAI SY9 sing 358 n n CAI OAJ SY9 doub 359 n n CAV HAV SY9 sing 360 n n CAU HAU1 SY9 sing 361 n n CAU HAU2 SY9 sing 362 n n CAT HAT SY9 sing 363 n n CAN HAN SY9 sing 364 n n CAK HAK SY9 sing 365 n n CAM HAM SY9 sing 366 n n CAF HAF SY9 sing 367 n n CAE HAE SY9 sing 368 n n CAD HAD SY9 sing 369 n n CAC HAC SY9 sing 370 n n CAW HAW1 SY9 sing 371 n n CAW HAW2 SY9 sing 372 n n CAX HAX1 SY9 sing 373 n n CAX HAX2 SY9 sing 374 n n CAS HAS1 SY9 sing 375 n n CAS HAS2 SY9 sing 376 n n CAQ HAQ SY9 sing 377 n n CAP HAP1 SY9 sing 378 n n CAP HAP2 SY9 sing 379 n n CAL HAL1 SY9 sing 380 n n CAL HAL2 SY9 sing 381 n n # _atom_sites.entry_id 5OA0 _atom_sites.fract_transf_matrix[1][1] 0.013357 _atom_sites.fract_transf_matrix[1][2] 0.007711 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015423 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005393 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 SY9 A 1 601 601 SY9 SY9 . G 3 NAG A 1 602 602 NAG NAG . H 4 EDO A 1 603 603 EDO EDO . I 4 EDO A 1 604 604 EDO EDO . J 3 NAG B 1 301 602 NAG NAG . K 4 EDO B 1 302 603 EDO EDO . L 4 EDO B 1 303 604 EDO EDO . M 4 EDO B 1 304 1 EDO EDO . N 2 SY9 C 1 601 601 SY9 SY9 . O 2 SY9 C 1 602 601 SY9 SY9 . P 4 EDO C 1 603 603 EDO EDO . Q 4 EDO C 1 604 604 EDO EDO . R 2 SY9 D 1 601 601 SY9 SY9 . S 4 EDO D 1 602 603 EDO EDO . T 4 EDO D 1 603 604 EDO EDO . U 2 SY9 E 1 601 601 SY9 SY9 . V 4 EDO E 1 602 603 EDO EDO . W 4 EDO E 1 603 604 EDO EDO . X 4 EDO E 1 604 605 EDO EDO . Y 5 HOH A 1 701 21 HOH HOH . Y 5 HOH A 2 702 15 HOH HOH . Y 5 HOH A 3 703 87 HOH HOH . Y 5 HOH A 4 704 112 HOH HOH . Y 5 HOH A 5 705 63 HOH HOH . Y 5 HOH A 6 706 4 HOH HOH . Y 5 HOH A 7 707 7 HOH HOH . Y 5 HOH A 8 708 18 HOH HOH . Y 5 HOH A 9 709 79 HOH HOH . Y 5 HOH A 10 710 65 HOH HOH . Y 5 HOH A 11 711 46 HOH HOH . Y 5 HOH A 12 712 22 HOH HOH . Y 5 HOH A 13 713 55 HOH HOH . Y 5 HOH A 14 714 60 HOH HOH . Y 5 HOH A 15 715 71 HOH HOH . Y 5 HOH A 16 716 49 HOH HOH . Y 5 HOH A 17 717 99 HOH HOH . Y 5 HOH A 18 718 44 HOH HOH . Y 5 HOH A 19 719 5 HOH HOH . Y 5 HOH A 20 720 1 HOH HOH . Y 5 HOH A 21 721 57 HOH HOH . Y 5 HOH A 22 722 31 HOH HOH . Y 5 HOH A 23 723 100 HOH HOH . Y 5 HOH A 24 724 2 HOH HOH . Y 5 HOH A 25 725 45 HOH HOH . Y 5 HOH A 26 726 38 HOH HOH . Y 5 HOH A 27 727 3 HOH HOH . Y 5 HOH A 28 728 103 HOH HOH . Z 5 HOH B 1 401 104 HOH HOH . Z 5 HOH B 2 402 20 HOH HOH . Z 5 HOH B 3 403 85 HOH HOH . Z 5 HOH B 4 404 84 HOH HOH . Z 5 HOH B 5 405 91 HOH HOH . Z 5 HOH B 6 406 10 HOH HOH . Z 5 HOH B 7 407 69 HOH HOH . Z 5 HOH B 8 408 33 HOH HOH . Z 5 HOH B 9 409 81 HOH HOH . Z 5 HOH B 10 410 77 HOH HOH . Z 5 HOH B 11 411 53 HOH HOH . Z 5 HOH B 12 412 36 HOH HOH . Z 5 HOH B 13 413 41 HOH HOH . Z 5 HOH B 14 414 62 HOH HOH . Z 5 HOH B 15 415 102 HOH HOH . Z 5 HOH B 16 416 98 HOH HOH . Z 5 HOH B 17 417 61 HOH HOH . Z 5 HOH B 18 418 47 HOH HOH . Z 5 HOH B 19 419 35 HOH HOH . Z 5 HOH B 20 420 92 HOH HOH . Z 5 HOH B 21 421 24 HOH HOH . AA 5 HOH C 1 701 110 HOH HOH . AA 5 HOH C 2 702 17 HOH HOH . AA 5 HOH C 3 703 80 HOH HOH . AA 5 HOH C 4 704 106 HOH HOH . AA 5 HOH C 5 705 66 HOH HOH . AA 5 HOH C 6 706 14 HOH HOH . AA 5 HOH C 7 707 64 HOH HOH . AA 5 HOH C 8 708 73 HOH HOH . AA 5 HOH C 9 709 27 HOH HOH . AA 5 HOH C 10 710 28 HOH HOH . AA 5 HOH C 11 711 48 HOH HOH . AA 5 HOH C 12 712 42 HOH HOH . AA 5 HOH C 13 713 54 HOH HOH . AA 5 HOH C 14 714 58 HOH HOH . AA 5 HOH C 15 715 78 HOH HOH . BA 5 HOH D 1 701 82 HOH HOH . BA 5 HOH D 2 702 93 HOH HOH . BA 5 HOH D 3 703 29 HOH HOH . BA 5 HOH D 4 704 67 HOH HOH . BA 5 HOH D 5 705 72 HOH HOH . BA 5 HOH D 6 706 9 HOH HOH . BA 5 HOH D 7 707 86 HOH HOH . BA 5 HOH D 8 708 111 HOH HOH . BA 5 HOH D 9 709 11 HOH HOH . BA 5 HOH D 10 710 26 HOH HOH . BA 5 HOH D 11 711 34 HOH HOH . BA 5 HOH D 12 712 32 HOH HOH . BA 5 HOH D 13 713 43 HOH HOH . BA 5 HOH D 14 714 117 HOH HOH . BA 5 HOH D 15 715 25 HOH HOH . BA 5 HOH D 16 716 51 HOH HOH . BA 5 HOH D 17 717 75 HOH HOH . BA 5 HOH D 18 718 6 HOH HOH . BA 5 HOH D 19 719 116 HOH HOH . BA 5 HOH D 20 720 101 HOH HOH . BA 5 HOH D 21 721 59 HOH HOH . BA 5 HOH D 22 722 37 HOH HOH . CA 5 HOH E 1 701 107 HOH HOH . CA 5 HOH E 2 702 105 HOH HOH . CA 5 HOH E 3 703 13 HOH HOH . CA 5 HOH E 4 704 88 HOH HOH . CA 5 HOH E 5 705 95 HOH HOH . CA 5 HOH E 6 706 70 HOH HOH . CA 5 HOH E 7 707 83 HOH HOH . CA 5 HOH E 8 708 94 HOH HOH . CA 5 HOH E 9 709 30 HOH HOH . CA 5 HOH E 10 710 113 HOH HOH . CA 5 HOH E 11 711 76 HOH HOH . CA 5 HOH E 12 712 16 HOH HOH . CA 5 HOH E 13 713 50 HOH HOH . CA 5 HOH E 14 714 68 HOH HOH . CA 5 HOH E 15 715 74 HOH HOH . CA 5 HOH E 16 716 8 HOH HOH . CA 5 HOH E 17 717 23 HOH HOH . CA 5 HOH E 18 718 40 HOH HOH . CA 5 HOH E 19 719 56 HOH HOH . CA 5 HOH E 20 720 97 HOH HOH . CA 5 HOH E 21 721 39 HOH HOH . CA 5 HOH E 22 722 52 HOH HOH . CA 5 HOH E 23 723 90 HOH HOH . CA 5 HOH E 24 724 96 HOH HOH . CA 5 HOH E 25 725 19 HOH HOH . CA 5 HOH E 26 726 12 HOH HOH . CA 5 HOH E 27 727 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAV SY9 . . . R 2 14.742 9.909 18.733 1 43.29 ? CAV SY9 601 D 1 HETATM 2 C CAU SY9 . . . R 2 14.597 9.702 20.232 1 42.69 ? CAU SY9 601 D 1 HETATM 3 C CAT SY9 . . . R 2 13.102 9.669 20.57 1 43.45 ? CAT SY9 601 D 1 HETATM 4 C CAN SY9 . . . R 2 12.575 8.351 19.982 1 40.83 ? CAN SY9 601 D 1 HETATM 5 C CAK SY9 . . . R 2 12.733 8.281 18.463 1 41.55 ? CAK SY9 601 D 1 HETATM 6 N NAH SY9 . . . R 2 12.723 6.835 18.109 1 40.62 ? NAH SY9 601 D 1 HETATM 7 C CAA SY9 . . . R 2 13.997 6.455 17.638 1 38.49 ? CAA SY9 601 D 1 HETATM 8 C CAF SY9 . . . R 2 14.451 5.185 17.306 1 36.73 ? CAF SY9 601 D 1 HETATM 9 C CAE SY9 . . . R 2 15.77 5.042 16.909 1 37.43 ? CAE SY9 601 D 1 HETATM 10 C CAD SY9 . . . R 2 16.612 6.146 16.836 1 38.61 ? CAD SY9 601 D 1 HETATM 11 C CAC SY9 . . . R 2 16.145 7.412 17.153 1 38.71 ? CAC SY9 601 D 1 HETATM 12 C CAB SY9 . . . R 2 14.829 7.567 17.556 1 38.85 ? CAB SY9 601 D 1 HETATM 13 C CAG SY9 . . . R 2 14.068 8.827 17.863 1 41.37 ? CAG SY9 601 D 1 HETATM 14 C CAW SY9 . . . R 2 13.824 9.629 16.576 1 43.64 ? CAW SY9 601 D 1 HETATM 15 C CAX SY9 . . . R 2 13.313 10.955 17.097 1 43.14 ? CAX SY9 601 D 1 HETATM 16 N NAY SY9 . . . R 2 14.124 11.202 18.291 1 45.75 ? NAY SY9 601 D 1 HETATM 17 C CAS SY9 . . . R 2 13.358 11.876 19.353 1 44.42 ? CAS SY9 601 D 1 HETATM 18 C CAR SY9 . . . R 2 12.417 10.926 20.036 1 43.39 ? CAR SY9 601 D 1 HETATM 19 C CAQ SY9 . . . R 2 11.106 11.121 20.097 1 44.13 ? CAQ SY9 601 D 1 HETATM 20 C CAP SY9 . . . R 2 10.153 10.113 20.667 1 44.91 ? CAP SY9 601 D 1 HETATM 21 O OAO SY9 . . . R 2 10.161 8.891 19.907 1 44.94 ? OAO SY9 601 D 1 HETATM 22 C CAM SY9 . . . R 2 11.151 7.938 20.307 1 41.56 ? CAM SY9 601 D 1 HETATM 23 C CAL SY9 . . . R 2 10.783 6.654 19.564 1 41.69 ? CAL SY9 601 D 1 HETATM 24 C CAI SY9 . . . R 2 11.833 6 18.71 1 40.71 ? CAI SY9 601 D 1 HETATM 25 O OAJ SY9 . . . R 2 11.883 4.795 18.584 1 47.75 ? OAJ SY9 601 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #