data_5OA0
#
_model_server_result.job_id            f2or6-NEXHG6hdNfe4qxag 
_model_server_result.datetime_utc      '2024-11-22 12:45:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oa0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":601}' 
#
_entry.id    5OA0 
#
_exptl.entry_id    5OA0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              334.412 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            STRYCHNINE 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5OA0 
_cell.length_a            74.87 
_cell.length_b            74.87 
_cell.length_c            185.425 
_cell.Z_PDB               15 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OA0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 N N N 
? 2 O N N 
? 2 R N N 
? 2 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 144 A CYS 144 1_555 A SG CYS 157 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf2 A SG CYS 207 A CYS 207 1_555 A SG CYS 208 A CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
disulf ? disulf3 B SG CYS 144 B CYS 144 1_555 B SG CYS 157 B CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
disulf ? disulf4 B SG CYS 207 B CYS 207 1_555 B SG CYS 208 B CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
disulf ? disulf5 C SG CYS 144 C CYS 144 1_555 C SG CYS 157 C CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
disulf ? disulf6 C SG CYS 207 C CYS 207 1_555 C SG CYS 208 C CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
disulf ? disulf7 D SG CYS 144 D CYS 144 1_555 D SG CYS 157 D CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf8 D SG CYS 207 D CYS 207 1_555 D SG CYS 208 D CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
disulf ? disulf9 E SG CYS 144 E CYS 144 1_555 E SG CYS 157 E CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? 
disulf ? disulf10 E SG CYS 207 E CYS 207 1_555 E SG CYS 208 E CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
covale ? covale1 A ND2 ASN 91 A ASN 91 1_555 G C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale2 B ND2 ASN 91 B ASN 91 1_555 J C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? 
#
_chem_comp.formula           'C21 H22 N2 O2' 
_chem_comp.formula_weight    334.412 
_chem_comp.id                SY9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              STRYCHNINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAV CAU SY9 sing 329 n n 
CAV CAG SY9 sing 330 n n 
CAV NAY SY9 sing 331 n n 
CAU CAT SY9 sing 332 n n 
CAT CAN SY9 sing 333 n n 
CAT CAR SY9 sing 334 n n 
CAN CAK SY9 sing 335 n n 
CAN CAM SY9 sing 336 n n 
CAK NAH SY9 sing 337 n n 
CAK CAG SY9 sing 338 n n 
NAH CAA SY9 sing 339 n n 
NAH CAI SY9 sing 340 n n 
CAA CAF SY9 sing 341 n y 
CAA CAB SY9 doub 342 n y 
CAF CAE SY9 doub 343 n y 
CAE CAD SY9 sing 344 n y 
CAD CAC SY9 doub 345 n y 
CAC CAB SY9 sing 346 n y 
CAB CAG SY9 sing 347 n n 
CAG CAW SY9 sing 348 n n 
CAW CAX SY9 sing 349 n n 
CAX NAY SY9 sing 350 n n 
NAY CAS SY9 sing 351 n n 
CAS CAR SY9 sing 352 n n 
CAR CAQ SY9 doub 353 n n 
CAQ CAP SY9 sing 354 n n 
CAP OAO SY9 sing 355 n n 
OAO CAM SY9 sing 356 n n 
CAM CAL SY9 sing 357 n n 
CAL CAI SY9 sing 358 n n 
CAI OAJ SY9 doub 359 n n 
CAV HAV SY9 sing 360 n n 
CAU HAU1 SY9 sing 361 n n 
CAU HAU2 SY9 sing 362 n n 
CAT HAT SY9 sing 363 n n 
CAN HAN SY9 sing 364 n n 
CAK HAK SY9 sing 365 n n 
CAM HAM SY9 sing 366 n n 
CAF HAF SY9 sing 367 n n 
CAE HAE SY9 sing 368 n n 
CAD HAD SY9 sing 369 n n 
CAC HAC SY9 sing 370 n n 
CAW HAW1 SY9 sing 371 n n 
CAW HAW2 SY9 sing 372 n n 
CAX HAX1 SY9 sing 373 n n 
CAX HAX2 SY9 sing 374 n n 
CAS HAS1 SY9 sing 375 n n 
CAS HAS2 SY9 sing 376 n n 
CAQ HAQ SY9 sing 377 n n 
CAP HAP1 SY9 sing 378 n n 
CAP HAP2 SY9 sing 379 n n 
CAL HAL1 SY9 sing 380 n n 
CAL HAL2 SY9 sing 381 n n 
#
_atom_sites.entry_id                     5OA0 
_atom_sites.fract_transf_matrix[1][1]    0.013357 
_atom_sites.fract_transf_matrix[1][2]    0.007711 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015423 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005393 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 SY9 A 1 601 601 SY9 SY9 . 
G 3 NAG A 1 602 602 NAG NAG . 
H 4 EDO A 1 603 603 EDO EDO . 
I 4 EDO A 1 604 604 EDO EDO . 
J 3 NAG B 1 301 602 NAG NAG . 
K 4 EDO B 1 302 603 EDO EDO . 
L 4 EDO B 1 303 604 EDO EDO . 
M 4 EDO B 1 304 1 EDO EDO . 
N 2 SY9 C 1 601 601 SY9 SY9 . 
O 2 SY9 C 1 602 601 SY9 SY9 . 
P 4 EDO C 1 603 603 EDO EDO . 
Q 4 EDO C 1 604 604 EDO EDO . 
R 2 SY9 D 1 601 601 SY9 SY9 . 
S 4 EDO D 1 602 603 EDO EDO . 
T 4 EDO D 1 603 604 EDO EDO . 
U 2 SY9 E 1 601 601 SY9 SY9 . 
V 4 EDO E 1 602 603 EDO EDO . 
W 4 EDO E 1 603 604 EDO EDO . 
X 4 EDO E 1 604 605 EDO EDO . 
Y 5 HOH A 1 701 21 HOH HOH . 
Y 5 HOH A 2 702 15 HOH HOH . 
Y 5 HOH A 3 703 87 HOH HOH . 
Y 5 HOH A 4 704 112 HOH HOH . 
Y 5 HOH A 5 705 63 HOH HOH . 
Y 5 HOH A 6 706 4 HOH HOH . 
Y 5 HOH A 7 707 7 HOH HOH . 
Y 5 HOH A 8 708 18 HOH HOH . 
Y 5 HOH A 9 709 79 HOH HOH . 
Y 5 HOH A 10 710 65 HOH HOH . 
Y 5 HOH A 11 711 46 HOH HOH . 
Y 5 HOH A 12 712 22 HOH HOH . 
Y 5 HOH A 13 713 55 HOH HOH . 
Y 5 HOH A 14 714 60 HOH HOH . 
Y 5 HOH A 15 715 71 HOH HOH . 
Y 5 HOH A 16 716 49 HOH HOH . 
Y 5 HOH A 17 717 99 HOH HOH . 
Y 5 HOH A 18 718 44 HOH HOH . 
Y 5 HOH A 19 719 5 HOH HOH . 
Y 5 HOH A 20 720 1 HOH HOH . 
Y 5 HOH A 21 721 57 HOH HOH . 
Y 5 HOH A 22 722 31 HOH HOH . 
Y 5 HOH A 23 723 100 HOH HOH . 
Y 5 HOH A 24 724 2 HOH HOH . 
Y 5 HOH A 25 725 45 HOH HOH . 
Y 5 HOH A 26 726 38 HOH HOH . 
Y 5 HOH A 27 727 3 HOH HOH . 
Y 5 HOH A 28 728 103 HOH HOH . 
Z 5 HOH B 1 401 104 HOH HOH . 
Z 5 HOH B 2 402 20 HOH HOH . 
Z 5 HOH B 3 403 85 HOH HOH . 
Z 5 HOH B 4 404 84 HOH HOH . 
Z 5 HOH B 5 405 91 HOH HOH . 
Z 5 HOH B 6 406 10 HOH HOH . 
Z 5 HOH B 7 407 69 HOH HOH . 
Z 5 HOH B 8 408 33 HOH HOH . 
Z 5 HOH B 9 409 81 HOH HOH . 
Z 5 HOH B 10 410 77 HOH HOH . 
Z 5 HOH B 11 411 53 HOH HOH . 
Z 5 HOH B 12 412 36 HOH HOH . 
Z 5 HOH B 13 413 41 HOH HOH . 
Z 5 HOH B 14 414 62 HOH HOH . 
Z 5 HOH B 15 415 102 HOH HOH . 
Z 5 HOH B 16 416 98 HOH HOH . 
Z 5 HOH B 17 417 61 HOH HOH . 
Z 5 HOH B 18 418 47 HOH HOH . 
Z 5 HOH B 19 419 35 HOH HOH . 
Z 5 HOH B 20 420 92 HOH HOH . 
Z 5 HOH B 21 421 24 HOH HOH . 
AA 5 HOH C 1 701 110 HOH HOH . 
AA 5 HOH C 2 702 17 HOH HOH . 
AA 5 HOH C 3 703 80 HOH HOH . 
AA 5 HOH C 4 704 106 HOH HOH . 
AA 5 HOH C 5 705 66 HOH HOH . 
AA 5 HOH C 6 706 14 HOH HOH . 
AA 5 HOH C 7 707 64 HOH HOH . 
AA 5 HOH C 8 708 73 HOH HOH . 
AA 5 HOH C 9 709 27 HOH HOH . 
AA 5 HOH C 10 710 28 HOH HOH . 
AA 5 HOH C 11 711 48 HOH HOH . 
AA 5 HOH C 12 712 42 HOH HOH . 
AA 5 HOH C 13 713 54 HOH HOH . 
AA 5 HOH C 14 714 58 HOH HOH . 
AA 5 HOH C 15 715 78 HOH HOH . 
BA 5 HOH D 1 701 82 HOH HOH . 
BA 5 HOH D 2 702 93 HOH HOH . 
BA 5 HOH D 3 703 29 HOH HOH . 
BA 5 HOH D 4 704 67 HOH HOH . 
BA 5 HOH D 5 705 72 HOH HOH . 
BA 5 HOH D 6 706 9 HOH HOH . 
BA 5 HOH D 7 707 86 HOH HOH . 
BA 5 HOH D 8 708 111 HOH HOH . 
BA 5 HOH D 9 709 11 HOH HOH . 
BA 5 HOH D 10 710 26 HOH HOH . 
BA 5 HOH D 11 711 34 HOH HOH . 
BA 5 HOH D 12 712 32 HOH HOH . 
BA 5 HOH D 13 713 43 HOH HOH . 
BA 5 HOH D 14 714 117 HOH HOH . 
BA 5 HOH D 15 715 25 HOH HOH . 
BA 5 HOH D 16 716 51 HOH HOH . 
BA 5 HOH D 17 717 75 HOH HOH . 
BA 5 HOH D 18 718 6 HOH HOH . 
BA 5 HOH D 19 719 116 HOH HOH . 
BA 5 HOH D 20 720 101 HOH HOH . 
BA 5 HOH D 21 721 59 HOH HOH . 
BA 5 HOH D 22 722 37 HOH HOH . 
CA 5 HOH E 1 701 107 HOH HOH . 
CA 5 HOH E 2 702 105 HOH HOH . 
CA 5 HOH E 3 703 13 HOH HOH . 
CA 5 HOH E 4 704 88 HOH HOH . 
CA 5 HOH E 5 705 95 HOH HOH . 
CA 5 HOH E 6 706 70 HOH HOH . 
CA 5 HOH E 7 707 83 HOH HOH . 
CA 5 HOH E 8 708 94 HOH HOH . 
CA 5 HOH E 9 709 30 HOH HOH . 
CA 5 HOH E 10 710 113 HOH HOH . 
CA 5 HOH E 11 711 76 HOH HOH . 
CA 5 HOH E 12 712 16 HOH HOH . 
CA 5 HOH E 13 713 50 HOH HOH . 
CA 5 HOH E 14 714 68 HOH HOH . 
CA 5 HOH E 15 715 74 HOH HOH . 
CA 5 HOH E 16 716 8 HOH HOH . 
CA 5 HOH E 17 717 23 HOH HOH . 
CA 5 HOH E 18 718 40 HOH HOH . 
CA 5 HOH E 19 719 56 HOH HOH . 
CA 5 HOH E 20 720 97 HOH HOH . 
CA 5 HOH E 21 721 39 HOH HOH . 
CA 5 HOH E 22 722 52 HOH HOH . 
CA 5 HOH E 23 723 90 HOH HOH . 
CA 5 HOH E 24 724 96 HOH HOH . 
CA 5 HOH E 25 725 19 HOH HOH . 
CA 5 HOH E 26 726 12 HOH HOH . 
CA 5 HOH E 27 727 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAV SY9 . . . U 2 16.663 -4.315 -8.477 1 45.27 ? CAV SY9 601 E 1 
HETATM 2 C CAU SY9 . . . U 2 17.014 -5.721 -8.019 1 45.67 ? CAU SY9 601 E 1 
HETATM 3 C CAT SY9 . . . U 2 15.96 -6.181 -6.997 1 47.74 ? CAT SY9 601 E 1 
HETATM 4 C CAN SY9 . . . U 2 14.664 -6.395 -7.802 1 48.12 ? CAN SY9 601 E 1 
HETATM 5 C CAK SY9 . . . U 2 14.166 -5.11 -8.463 1 45.26 ? CAK SY9 601 E 1 
HETATM 6 N NAH SY9 . . . U 2 13.314 -5.538 -9.609 1 42.43 ? NAH SY9 601 E 1 
HETATM 7 C CAA SY9 . . . U 2 13.943 -5.168 -10.829 1 40.68 ? CAA SY9 601 E 1 
HETATM 8 C CAF SY9 . . . U 2 13.55 -5.44 -12.133 1 37.96 ? CAF SY9 601 E 1 
HETATM 9 C CAE SY9 . . . U 2 14.356 -4.992 -13.169 1 40.86 ? CAE SY9 601 E 1 
HETATM 10 C CAD SY9 . . . U 2 15.532 -4.303 -12.914 1 41.35 ? CAD SY9 601 E 1 
HETATM 11 C CAC SY9 . . . U 2 15.913 -4.028 -11.613 1 43.6 ? CAC SY9 601 E 1 
HETATM 12 C CAB SY9 . . . U 2 15.109 -4.453 -10.564 1 42.57 ? CAB SY9 601 E 1 
HETATM 13 C CAG SY9 . . . U 2 15.247 -4.168 -9.095 1 45.24 ? CAG SY9 601 E 1 
HETATM 14 C CAW SY9 . . . U 2 14.955 -2.683 -8.802 1 46.14 ? CAW SY9 601 E 1 
HETATM 15 C CAX SY9 . . . U 2 15.551 -2.434 -7.432 1 46.14 ? CAX SY9 601 E 1 
HETATM 16 N NAY SY9 . . . U 2 16.704 -3.345 -7.342 1 49.13 ? NAY SY9 601 E 1 
HETATM 17 C CAS SY9 . . . U 2 16.805 -3.998 -6.022 1 49.94 ? CAS SY9 601 E 1 
HETATM 18 C CAR SY9 . . . U 2 15.844 -5.15 -5.884 1 46.66 ? CAR SY9 601 E 1 
HETATM 19 C CAQ SY9 . . . U 2 14.931 -5.222 -4.926 1 46.05 ? CAQ SY9 601 E 1 
HETATM 20 C CAP SY9 . . . U 2 13.911 -6.318 -4.83 1 47.72 ? CAP SY9 601 E 1 
HETATM 21 O OAO SY9 . . . U 2 13.006 -6.314 -5.952 1 49 ? OAO SY9 601 E 1 
HETATM 22 C CAM SY9 . . . U 2 13.466 -7.038 -7.098 1 47.33 ? CAM SY9 601 E 1 
HETATM 23 C CAL SY9 . . . U 2 12.257 -7.089 -8.031 1 44.38 ? CAL SY9 601 E 1 
HETATM 24 C CAI SY9 . . . U 2 12.415 -6.565 -9.437 1 44.25 ? CAI SY9 601 E 1 
HETATM 25 O OAJ SY9 . . . U 2 11.747 -7.027 -10.353 1 43.94 ? OAJ SY9 601 E 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           25 
#