data_5OA0
#
_model_server_result.job_id            5WsmIsymW7m1nZ7Ot88Ppg 
_model_server_result.datetime_utc      '2024-11-22 12:40:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oa0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":602}' 
#
_entry.id    5OA0 
#
_exptl.entry_id    5OA0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5OA0 
_cell.length_a            74.87 
_cell.length_b            74.87 
_cell.length_c            185.425 
_cell.Z_PDB               15 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OA0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 144 A CYS 144 1_555 A SG CYS 157 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf2 A SG CYS 207 A CYS 207 1_555 A SG CYS 208 A CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
disulf ? disulf3 B SG CYS 144 B CYS 144 1_555 B SG CYS 157 B CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
disulf ? disulf4 B SG CYS 207 B CYS 207 1_555 B SG CYS 208 B CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
disulf ? disulf5 C SG CYS 144 C CYS 144 1_555 C SG CYS 157 C CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
disulf ? disulf6 C SG CYS 207 C CYS 207 1_555 C SG CYS 208 C CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
disulf ? disulf7 D SG CYS 144 D CYS 144 1_555 D SG CYS 157 D CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf8 D SG CYS 207 D CYS 207 1_555 D SG CYS 208 D CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
disulf ? disulf9 E SG CYS 144 E CYS 144 1_555 E SG CYS 157 E CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? 
disulf ? disulf10 E SG CYS 207 E CYS 207 1_555 E SG CYS 208 E CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
covale ? covale1 A ND2 ASN 91 A ASN 91 1_555 G C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale2 B ND2 ASN 91 B ASN 91 1_555 J C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 246 n n 
C1 O1 NAG sing 247 n n 
C1 O5 NAG sing 248 n n 
C1 H1 NAG sing 249 n n 
C2 C3 NAG sing 250 n n 
C2 N2 NAG sing 251 n n 
C2 H2 NAG sing 252 n n 
C3 C4 NAG sing 253 n n 
C3 O3 NAG sing 254 n n 
C3 H3 NAG sing 255 n n 
C4 C5 NAG sing 256 n n 
C4 O4 NAG sing 257 n n 
C4 H4 NAG sing 258 n n 
C5 C6 NAG sing 259 n n 
C5 O5 NAG sing 260 n n 
C5 H5 NAG sing 261 n n 
C6 O6 NAG sing 262 n n 
C6 H61 NAG sing 263 n n 
C6 H62 NAG sing 264 n n 
C7 C8 NAG sing 265 n n 
C7 N2 NAG sing 266 n n 
C7 O7 NAG doub 267 n n 
C8 H81 NAG sing 268 n n 
C8 H82 NAG sing 269 n n 
C8 H83 NAG sing 270 n n 
N2 HN2 NAG sing 271 n n 
O1 HO1 NAG sing 272 n n 
O3 HO3 NAG sing 273 n n 
O4 HO4 NAG sing 274 n n 
O6 HO6 NAG sing 275 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5OA0 
_atom_sites.fract_transf_matrix[1][1]    0.013357 
_atom_sites.fract_transf_matrix[1][2]    0.007711 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015423 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005393 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 SY9 A 1 601 601 SY9 SY9 . 
G 3 NAG A 1 602 602 NAG NAG . 
H 4 EDO A 1 603 603 EDO EDO . 
I 4 EDO A 1 604 604 EDO EDO . 
J 3 NAG B 1 301 602 NAG NAG . 
K 4 EDO B 1 302 603 EDO EDO . 
L 4 EDO B 1 303 604 EDO EDO . 
M 4 EDO B 1 304 1 EDO EDO . 
N 2 SY9 C 1 601 601 SY9 SY9 . 
O 2 SY9 C 1 602 601 SY9 SY9 . 
P 4 EDO C 1 603 603 EDO EDO . 
Q 4 EDO C 1 604 604 EDO EDO . 
R 2 SY9 D 1 601 601 SY9 SY9 . 
S 4 EDO D 1 602 603 EDO EDO . 
T 4 EDO D 1 603 604 EDO EDO . 
U 2 SY9 E 1 601 601 SY9 SY9 . 
V 4 EDO E 1 602 603 EDO EDO . 
W 4 EDO E 1 603 604 EDO EDO . 
X 4 EDO E 1 604 605 EDO EDO . 
Y 5 HOH A 1 701 21 HOH HOH . 
Y 5 HOH A 2 702 15 HOH HOH . 
Y 5 HOH A 3 703 87 HOH HOH . 
Y 5 HOH A 4 704 112 HOH HOH . 
Y 5 HOH A 5 705 63 HOH HOH . 
Y 5 HOH A 6 706 4 HOH HOH . 
Y 5 HOH A 7 707 7 HOH HOH . 
Y 5 HOH A 8 708 18 HOH HOH . 
Y 5 HOH A 9 709 79 HOH HOH . 
Y 5 HOH A 10 710 65 HOH HOH . 
Y 5 HOH A 11 711 46 HOH HOH . 
Y 5 HOH A 12 712 22 HOH HOH . 
Y 5 HOH A 13 713 55 HOH HOH . 
Y 5 HOH A 14 714 60 HOH HOH . 
Y 5 HOH A 15 715 71 HOH HOH . 
Y 5 HOH A 16 716 49 HOH HOH . 
Y 5 HOH A 17 717 99 HOH HOH . 
Y 5 HOH A 18 718 44 HOH HOH . 
Y 5 HOH A 19 719 5 HOH HOH . 
Y 5 HOH A 20 720 1 HOH HOH . 
Y 5 HOH A 21 721 57 HOH HOH . 
Y 5 HOH A 22 722 31 HOH HOH . 
Y 5 HOH A 23 723 100 HOH HOH . 
Y 5 HOH A 24 724 2 HOH HOH . 
Y 5 HOH A 25 725 45 HOH HOH . 
Y 5 HOH A 26 726 38 HOH HOH . 
Y 5 HOH A 27 727 3 HOH HOH . 
Y 5 HOH A 28 728 103 HOH HOH . 
Z 5 HOH B 1 401 104 HOH HOH . 
Z 5 HOH B 2 402 20 HOH HOH . 
Z 5 HOH B 3 403 85 HOH HOH . 
Z 5 HOH B 4 404 84 HOH HOH . 
Z 5 HOH B 5 405 91 HOH HOH . 
Z 5 HOH B 6 406 10 HOH HOH . 
Z 5 HOH B 7 407 69 HOH HOH . 
Z 5 HOH B 8 408 33 HOH HOH . 
Z 5 HOH B 9 409 81 HOH HOH . 
Z 5 HOH B 10 410 77 HOH HOH . 
Z 5 HOH B 11 411 53 HOH HOH . 
Z 5 HOH B 12 412 36 HOH HOH . 
Z 5 HOH B 13 413 41 HOH HOH . 
Z 5 HOH B 14 414 62 HOH HOH . 
Z 5 HOH B 15 415 102 HOH HOH . 
Z 5 HOH B 16 416 98 HOH HOH . 
Z 5 HOH B 17 417 61 HOH HOH . 
Z 5 HOH B 18 418 47 HOH HOH . 
Z 5 HOH B 19 419 35 HOH HOH . 
Z 5 HOH B 20 420 92 HOH HOH . 
Z 5 HOH B 21 421 24 HOH HOH . 
AA 5 HOH C 1 701 110 HOH HOH . 
AA 5 HOH C 2 702 17 HOH HOH . 
AA 5 HOH C 3 703 80 HOH HOH . 
AA 5 HOH C 4 704 106 HOH HOH . 
AA 5 HOH C 5 705 66 HOH HOH . 
AA 5 HOH C 6 706 14 HOH HOH . 
AA 5 HOH C 7 707 64 HOH HOH . 
AA 5 HOH C 8 708 73 HOH HOH . 
AA 5 HOH C 9 709 27 HOH HOH . 
AA 5 HOH C 10 710 28 HOH HOH . 
AA 5 HOH C 11 711 48 HOH HOH . 
AA 5 HOH C 12 712 42 HOH HOH . 
AA 5 HOH C 13 713 54 HOH HOH . 
AA 5 HOH C 14 714 58 HOH HOH . 
AA 5 HOH C 15 715 78 HOH HOH . 
BA 5 HOH D 1 701 82 HOH HOH . 
BA 5 HOH D 2 702 93 HOH HOH . 
BA 5 HOH D 3 703 29 HOH HOH . 
BA 5 HOH D 4 704 67 HOH HOH . 
BA 5 HOH D 5 705 72 HOH HOH . 
BA 5 HOH D 6 706 9 HOH HOH . 
BA 5 HOH D 7 707 86 HOH HOH . 
BA 5 HOH D 8 708 111 HOH HOH . 
BA 5 HOH D 9 709 11 HOH HOH . 
BA 5 HOH D 10 710 26 HOH HOH . 
BA 5 HOH D 11 711 34 HOH HOH . 
BA 5 HOH D 12 712 32 HOH HOH . 
BA 5 HOH D 13 713 43 HOH HOH . 
BA 5 HOH D 14 714 117 HOH HOH . 
BA 5 HOH D 15 715 25 HOH HOH . 
BA 5 HOH D 16 716 51 HOH HOH . 
BA 5 HOH D 17 717 75 HOH HOH . 
BA 5 HOH D 18 718 6 HOH HOH . 
BA 5 HOH D 19 719 116 HOH HOH . 
BA 5 HOH D 20 720 101 HOH HOH . 
BA 5 HOH D 21 721 59 HOH HOH . 
BA 5 HOH D 22 722 37 HOH HOH . 
CA 5 HOH E 1 701 107 HOH HOH . 
CA 5 HOH E 2 702 105 HOH HOH . 
CA 5 HOH E 3 703 13 HOH HOH . 
CA 5 HOH E 4 704 88 HOH HOH . 
CA 5 HOH E 5 705 95 HOH HOH . 
CA 5 HOH E 6 706 70 HOH HOH . 
CA 5 HOH E 7 707 83 HOH HOH . 
CA 5 HOH E 8 708 94 HOH HOH . 
CA 5 HOH E 9 709 30 HOH HOH . 
CA 5 HOH E 10 710 113 HOH HOH . 
CA 5 HOH E 11 711 76 HOH HOH . 
CA 5 HOH E 12 712 16 HOH HOH . 
CA 5 HOH E 13 713 50 HOH HOH . 
CA 5 HOH E 14 714 68 HOH HOH . 
CA 5 HOH E 15 715 74 HOH HOH . 
CA 5 HOH E 16 716 8 HOH HOH . 
CA 5 HOH E 17 717 23 HOH HOH . 
CA 5 HOH E 18 718 40 HOH HOH . 
CA 5 HOH E 19 719 56 HOH HOH . 
CA 5 HOH E 20 720 97 HOH HOH . 
CA 5 HOH E 21 721 39 HOH HOH . 
CA 5 HOH E 22 722 52 HOH HOH . 
CA 5 HOH E 23 723 90 HOH HOH . 
CA 5 HOH E 24 724 96 HOH HOH . 
CA 5 HOH E 25 725 19 HOH HOH . 
CA 5 HOH E 26 726 12 HOH HOH . 
CA 5 HOH E 27 727 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . G 3 44.262 -1.421 -10.946 1 92.67 ? C1 NAG 602 A 1 
HETATM 2 C C2 NAG . . . G 3 44.942 -0.58 -9.85 1 99.72 ? C2 NAG 602 A 1 
HETATM 3 C C3 NAG . . . G 3 46.283 -1.137 -9.287 1 100.69 ? C3 NAG 602 A 1 
HETATM 4 C C4 NAG . . . G 3 46.55 -2.64 -9.494 1 99.57 ? C4 NAG 602 A 1 
HETATM 5 C C5 NAG . . . G 3 45.976 -3.108 -10.837 1 95.72 ? C5 NAG 602 A 1 
HETATM 6 C C6 NAG . . . G 3 46.14 -4.611 -11.092 1 92.08 ? C6 NAG 602 A 1 
HETATM 7 C C7 NAG . . . G 3 44.662 1.909 -9.865 1 94.51 ? C7 NAG 602 A 1 
HETATM 8 C C8 NAG . . . G 3 45.022 3.19 -10.59 1 83.27 ? C8 NAG 602 A 1 
HETATM 9 N N2 NAG . . . G 3 45.156 0.774 -10.392 1 101.95 ? N2 NAG 602 A 1 
HETATM 10 O O3 NAG . . . G 3 46.351 -0.875 -7.871 1 97.25 ? O3 NAG 602 A 1 
HETATM 11 O O4 NAG . . . G 3 47.963 -2.923 -9.369 1 92.94 ? O4 NAG 602 A 1 
HETATM 12 O O5 NAG . . . G 3 44.583 -2.808 -10.8 1 95.8 ? O5 NAG 602 A 1 
HETATM 13 O O6 NAG . . . G 3 45.304 -5.067 -12.171 1 78.17 ? O6 NAG 602 A 1 
HETATM 14 O O7 NAG . . . G 3 43.962 1.907 -8.856 1 86.39 ? O7 NAG 602 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#