data_5OA8
#
_model_server_result.job_id            QV-33g1kXposlDmwwUlzMw 
_model_server_result.datetime_utc      '2024-11-29 00:38:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oa8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5OA8 
#
_exptl.entry_id    5OA8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OA8 
_cell.length_a            73.09 
_cell.length_b            120.06 
_cell.length_c            67.02 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OA8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_454 -x-1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -73.09 0 -33.51 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 134 A HIS 134 1_555 B NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc2 A OD1 ASP 136 A ASP 136 1_555 B NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc3 A NE2 HIS 211 A HIS 211 1_555 B NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc4 B NI NI . A NI 401 1_555 C O5 AKG . A AKG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc5 B NI NI . A NI 401 1_555 C O1 AKG . A AKG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc6 B NI NI . A NI 401 1_555 E O HOH . A HOH 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5OA8 
_atom_sites.fract_transf_matrix[1][1]    0.013682 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008329 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014921 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NI A 1 401 301 NI NI . 
C 3 AKG A 1 402 302 AKG AKG . 
D 4 58L A 1 403 303 58L LIG . 
E 5 HOH A 1 501 135 HOH HOH . 
E 5 HOH A 2 502 7 HOH HOH . 
E 5 HOH A 3 503 12 HOH HOH . 
E 5 HOH A 4 504 72 HOH HOH . 
E 5 HOH A 5 505 144 HOH HOH . 
E 5 HOH A 6 506 52 HOH HOH . 
E 5 HOH A 7 507 74 HOH HOH . 
E 5 HOH A 8 508 71 HOH HOH . 
E 5 HOH A 9 509 151 HOH HOH . 
E 5 HOH A 10 510 16 HOH HOH . 
E 5 HOH A 11 511 62 HOH HOH . 
E 5 HOH A 12 512 10 HOH HOH . 
E 5 HOH A 13 513 160 HOH HOH . 
E 5 HOH A 14 514 15 HOH HOH . 
E 5 HOH A 15 515 84 HOH HOH . 
E 5 HOH A 16 516 140 HOH HOH . 
E 5 HOH A 17 517 75 HOH HOH . 
E 5 HOH A 18 518 159 HOH HOH . 
E 5 HOH A 19 519 64 HOH HOH . 
E 5 HOH A 20 520 114 HOH HOH . 
E 5 HOH A 21 521 49 HOH HOH . 
E 5 HOH A 22 522 106 HOH HOH . 
E 5 HOH A 23 523 51 HOH HOH . 
E 5 HOH A 24 524 124 HOH HOH . 
E 5 HOH A 25 525 57 HOH HOH . 
E 5 HOH A 26 526 111 HOH HOH . 
E 5 HOH A 27 527 33 HOH HOH . 
E 5 HOH A 28 528 56 HOH HOH . 
E 5 HOH A 29 529 41 HOH HOH . 
E 5 HOH A 30 530 153 HOH HOH . 
E 5 HOH A 31 531 96 HOH HOH . 
E 5 HOH A 32 532 55 HOH HOH . 
E 5 HOH A 33 533 45 HOH HOH . 
E 5 HOH A 34 534 4 HOH HOH . 
E 5 HOH A 35 535 185 HOH HOH . 
E 5 HOH A 36 536 130 HOH HOH . 
E 5 HOH A 37 537 44 HOH HOH . 
E 5 HOH A 38 538 29 HOH HOH . 
E 5 HOH A 39 539 24 HOH HOH . 
E 5 HOH A 40 540 131 HOH HOH . 
E 5 HOH A 41 541 122 HOH HOH . 
E 5 HOH A 42 542 189 HOH HOH . 
E 5 HOH A 43 543 95 HOH HOH . 
E 5 HOH A 44 544 68 HOH HOH . 
E 5 HOH A 45 545 78 HOH HOH . 
E 5 HOH A 46 546 126 HOH HOH . 
E 5 HOH A 47 547 13 HOH HOH . 
E 5 HOH A 48 548 40 HOH HOH . 
E 5 HOH A 49 549 136 HOH HOH . 
E 5 HOH A 50 550 109 HOH HOH . 
E 5 HOH A 51 551 38 HOH HOH . 
E 5 HOH A 52 552 43 HOH HOH . 
E 5 HOH A 53 553 158 HOH HOH . 
E 5 HOH A 54 554 82 HOH HOH . 
E 5 HOH A 55 555 175 HOH HOH . 
E 5 HOH A 56 556 134 HOH HOH . 
E 5 HOH A 57 557 90 HOH HOH . 
E 5 HOH A 58 558 58 HOH HOH . 
E 5 HOH A 59 559 115 HOH HOH . 
E 5 HOH A 60 560 143 HOH HOH . 
E 5 HOH A 61 561 25 HOH HOH . 
E 5 HOH A 62 562 180 HOH HOH . 
E 5 HOH A 63 563 31 HOH HOH . 
E 5 HOH A 64 564 66 HOH HOH . 
E 5 HOH A 65 565 6 HOH HOH . 
E 5 HOH A 66 566 138 HOH HOH . 
E 5 HOH A 67 567 116 HOH HOH . 
E 5 HOH A 68 568 63 HOH HOH . 
E 5 HOH A 69 569 137 HOH HOH . 
E 5 HOH A 70 570 184 HOH HOH . 
E 5 HOH A 71 571 83 HOH HOH . 
E 5 HOH A 72 572 178 HOH HOH . 
E 5 HOH A 73 573 5 HOH HOH . 
E 5 HOH A 74 574 20 HOH HOH . 
E 5 HOH A 75 575 47 HOH HOH . 
E 5 HOH A 76 576 86 HOH HOH . 
E 5 HOH A 77 577 98 HOH HOH . 
E 5 HOH A 78 578 9 HOH HOH . 
E 5 HOH A 79 579 121 HOH HOH . 
E 5 HOH A 80 580 196 HOH HOH . 
E 5 HOH A 81 581 118 HOH HOH . 
E 5 HOH A 82 582 89 HOH HOH . 
E 5 HOH A 83 583 18 HOH HOH . 
E 5 HOH A 84 584 171 HOH HOH . 
E 5 HOH A 85 585 59 HOH HOH . 
E 5 HOH A 86 586 104 HOH HOH . 
E 5 HOH A 87 587 97 HOH HOH . 
E 5 HOH A 88 588 34 HOH HOH . 
E 5 HOH A 89 589 35 HOH HOH . 
E 5 HOH A 90 590 80 HOH HOH . 
E 5 HOH A 91 591 22 HOH HOH . 
E 5 HOH A 92 592 28 HOH HOH . 
E 5 HOH A 93 593 60 HOH HOH . 
E 5 HOH A 94 594 1 HOH HOH . 
E 5 HOH A 95 595 32 HOH HOH . 
E 5 HOH A 96 596 23 HOH HOH . 
E 5 HOH A 97 597 36 HOH HOH . 
E 5 HOH A 98 598 162 HOH HOH . 
E 5 HOH A 99 599 17 HOH HOH . 
E 5 HOH A 100 600 42 HOH HOH . 
E 5 HOH A 101 601 147 HOH HOH . 
E 5 HOH A 102 602 112 HOH HOH . 
E 5 HOH A 103 603 50 HOH HOH . 
E 5 HOH A 104 604 139 HOH HOH . 
E 5 HOH A 105 605 26 HOH HOH . 
E 5 HOH A 106 606 129 HOH HOH . 
E 5 HOH A 107 607 76 HOH HOH . 
E 5 HOH A 108 608 14 HOH HOH . 
E 5 HOH A 109 609 2 HOH HOH . 
E 5 HOH A 110 610 30 HOH HOH . 
E 5 HOH A 111 611 120 HOH HOH . 
E 5 HOH A 112 612 39 HOH HOH . 
E 5 HOH A 113 613 79 HOH HOH . 
E 5 HOH A 114 614 92 HOH HOH . 
E 5 HOH A 115 615 81 HOH HOH . 
E 5 HOH A 116 616 73 HOH HOH . 
E 5 HOH A 117 617 70 HOH HOH . 
E 5 HOH A 118 618 48 HOH HOH . 
E 5 HOH A 119 619 99 HOH HOH . 
E 5 HOH A 120 620 193 HOH HOH . 
E 5 HOH A 121 621 91 HOH HOH . 
E 5 HOH A 122 622 88 HOH HOH . 
E 5 HOH A 123 623 165 HOH HOH . 
E 5 HOH A 124 624 27 HOH HOH . 
E 5 HOH A 125 625 132 HOH HOH . 
E 5 HOH A 126 626 19 HOH HOH . 
E 5 HOH A 127 627 53 HOH HOH . 
E 5 HOH A 128 628 77 HOH HOH . 
E 5 HOH A 129 629 54 HOH HOH . 
E 5 HOH A 130 630 85 HOH HOH . 
E 5 HOH A 131 631 11 HOH HOH . 
E 5 HOH A 132 632 101 HOH HOH . 
E 5 HOH A 133 633 173 HOH HOH . 
E 5 HOH A 134 634 142 HOH HOH . 
E 5 HOH A 135 635 61 HOH HOH . 
E 5 HOH A 136 636 161 HOH HOH . 
E 5 HOH A 137 637 87 HOH HOH . 
E 5 HOH A 138 638 113 HOH HOH . 
E 5 HOH A 139 639 8 HOH HOH . 
E 5 HOH A 140 640 187 HOH HOH . 
E 5 HOH A 141 641 148 HOH HOH . 
E 5 HOH A 142 642 93 HOH HOH . 
E 5 HOH A 143 643 21 HOH HOH . 
E 5 HOH A 144 644 3 HOH HOH . 
E 5 HOH A 145 645 65 HOH HOH . 
E 5 HOH A 146 646 67 HOH HOH . 
E 5 HOH A 147 647 167 HOH HOH . 
E 5 HOH A 148 648 94 HOH HOH . 
E 5 HOH A 149 649 168 HOH HOH . 
E 5 HOH A 150 650 157 HOH HOH . 
E 5 HOH A 151 651 133 HOH HOH . 
E 5 HOH A 152 652 69 HOH HOH . 
E 5 HOH A 153 653 194 HOH HOH . 
E 5 HOH A 154 654 166 HOH HOH . 
E 5 HOH A 155 655 195 HOH HOH . 
E 5 HOH A 156 656 149 HOH HOH . 
E 5 HOH A 157 657 127 HOH HOH . 
E 5 HOH A 158 658 192 HOH HOH . 
E 5 HOH A 159 659 156 HOH HOH . 
E 5 HOH A 160 660 119 HOH HOH . 
E 5 HOH A 161 661 117 HOH HOH . 
E 5 HOH A 162 662 186 HOH HOH . 
E 5 HOH A 163 663 46 HOH HOH . 
E 5 HOH A 164 664 152 HOH HOH . 
E 5 HOH A 165 665 177 HOH HOH . 
E 5 HOH A 166 666 164 HOH HOH . 
E 5 HOH A 167 667 37 HOH HOH . 
E 5 HOH A 168 668 110 HOH HOH . 
E 5 HOH A 169 669 155 HOH HOH . 
E 5 HOH A 170 670 172 HOH HOH . 
E 5 HOH A 171 671 154 HOH HOH . 
E 5 HOH A 172 672 170 HOH HOH . 
E 5 HOH A 173 673 105 HOH HOH . 
E 5 HOH A 174 674 103 HOH HOH . 
E 5 HOH A 175 675 191 HOH HOH . 
E 5 HOH A 176 676 141 HOH HOH . 
E 5 HOH A 177 677 183 HOH HOH . 
E 5 HOH A 178 678 146 HOH HOH . 
E 5 HOH A 179 679 107 HOH HOH . 
E 5 HOH A 180 680 176 HOH HOH . 
E 5 HOH A 181 681 102 HOH HOH . 
E 5 HOH A 182 682 150 HOH HOH . 
E 5 HOH A 183 683 123 HOH HOH . 
E 5 HOH A 184 684 125 HOH HOH . 
E 5 HOH A 185 685 128 HOH HOH . 
E 5 HOH A 186 686 169 HOH HOH . 
E 5 HOH A 187 687 190 HOH HOH . 
E 5 HOH A 188 688 174 HOH HOH . 
E 5 HOH A 189 689 182 HOH HOH . 
E 5 HOH A 190 690 145 HOH HOH . 
E 5 HOH A 191 691 179 HOH HOH . 
E 5 HOH A 192 692 100 HOH HOH . 
E 5 HOH A 193 693 188 HOH HOH . 
E 5 HOH A 194 694 163 HOH HOH . 
E 5 HOH A 195 695 108 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -21.386 
_atom_site.Cartn_y               -24.599 
_atom_site.Cartn_z               -5.452 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        27.04 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#