data_5OA8 # _model_server_result.job_id qXSw2QGxVGsM9jzkZnlwFw _model_server_result.datetime_utc '2024-11-29 00:47:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oa8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5OA8 # _exptl.entry_id 5OA8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.098 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-OXOGLUTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OA8 _cell.length_a 73.09 _cell.length_b 120.06 _cell.length_c 67.02 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OA8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_454 -x-1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -73.09 0 -33.51 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 134 A HIS 134 1_555 B NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc2 A OD1 ASP 136 A ASP 136 1_555 B NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc3 A NE2 HIS 211 A HIS 211 1_555 B NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc4 B NI NI . A NI 401 1_555 C O5 AKG . A AKG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc5 B NI NI . A NI 401 1_555 C O1 AKG . A AKG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc6 B NI NI . A NI 401 1_555 E O HOH . A HOH 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'C5 H6 O5' _chem_comp.formula_weight 146.098 _chem_comp.id AKG _chem_comp.mon_nstd_flag . _chem_comp.name '2-OXOGLUTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AKG doub 37 n n C1 O2 AKG sing 38 n n C1 C2 AKG sing 39 n n O2 HO2 AKG sing 40 n n C2 O5 AKG doub 41 n n C2 C3 AKG sing 42 n n C3 C4 AKG sing 43 n n C3 H31 AKG sing 44 n n C3 H32 AKG sing 45 n n C4 C5 AKG sing 46 n n C4 H41 AKG sing 47 n n C4 H42 AKG sing 48 n n C5 O3 AKG doub 49 n n C5 O4 AKG sing 50 n n O4 HO4 AKG sing 51 n n # _atom_sites.entry_id 5OA8 _atom_sites.fract_transf_matrix[1][1] 0.013682 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008329 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014921 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 401 301 NI NI . C 3 AKG A 1 402 302 AKG AKG . D 4 58L A 1 403 303 58L LIG . E 5 HOH A 1 501 135 HOH HOH . E 5 HOH A 2 502 7 HOH HOH . E 5 HOH A 3 503 12 HOH HOH . E 5 HOH A 4 504 72 HOH HOH . E 5 HOH A 5 505 144 HOH HOH . E 5 HOH A 6 506 52 HOH HOH . E 5 HOH A 7 507 74 HOH HOH . E 5 HOH A 8 508 71 HOH HOH . E 5 HOH A 9 509 151 HOH HOH . E 5 HOH A 10 510 16 HOH HOH . E 5 HOH A 11 511 62 HOH HOH . E 5 HOH A 12 512 10 HOH HOH . E 5 HOH A 13 513 160 HOH HOH . E 5 HOH A 14 514 15 HOH HOH . E 5 HOH A 15 515 84 HOH HOH . E 5 HOH A 16 516 140 HOH HOH . E 5 HOH A 17 517 75 HOH HOH . E 5 HOH A 18 518 159 HOH HOH . E 5 HOH A 19 519 64 HOH HOH . E 5 HOH A 20 520 114 HOH HOH . E 5 HOH A 21 521 49 HOH HOH . E 5 HOH A 22 522 106 HOH HOH . E 5 HOH A 23 523 51 HOH HOH . E 5 HOH A 24 524 124 HOH HOH . E 5 HOH A 25 525 57 HOH HOH . E 5 HOH A 26 526 111 HOH HOH . E 5 HOH A 27 527 33 HOH HOH . E 5 HOH A 28 528 56 HOH HOH . E 5 HOH A 29 529 41 HOH HOH . E 5 HOH A 30 530 153 HOH HOH . E 5 HOH A 31 531 96 HOH HOH . E 5 HOH A 32 532 55 HOH HOH . E 5 HOH A 33 533 45 HOH HOH . E 5 HOH A 34 534 4 HOH HOH . E 5 HOH A 35 535 185 HOH HOH . E 5 HOH A 36 536 130 HOH HOH . E 5 HOH A 37 537 44 HOH HOH . E 5 HOH A 38 538 29 HOH HOH . E 5 HOH A 39 539 24 HOH HOH . E 5 HOH A 40 540 131 HOH HOH . E 5 HOH A 41 541 122 HOH HOH . E 5 HOH A 42 542 189 HOH HOH . E 5 HOH A 43 543 95 HOH HOH . E 5 HOH A 44 544 68 HOH HOH . E 5 HOH A 45 545 78 HOH HOH . E 5 HOH A 46 546 126 HOH HOH . E 5 HOH A 47 547 13 HOH HOH . E 5 HOH A 48 548 40 HOH HOH . E 5 HOH A 49 549 136 HOH HOH . E 5 HOH A 50 550 109 HOH HOH . E 5 HOH A 51 551 38 HOH HOH . E 5 HOH A 52 552 43 HOH HOH . E 5 HOH A 53 553 158 HOH HOH . E 5 HOH A 54 554 82 HOH HOH . E 5 HOH A 55 555 175 HOH HOH . E 5 HOH A 56 556 134 HOH HOH . E 5 HOH A 57 557 90 HOH HOH . E 5 HOH A 58 558 58 HOH HOH . E 5 HOH A 59 559 115 HOH HOH . E 5 HOH A 60 560 143 HOH HOH . E 5 HOH A 61 561 25 HOH HOH . E 5 HOH A 62 562 180 HOH HOH . E 5 HOH A 63 563 31 HOH HOH . E 5 HOH A 64 564 66 HOH HOH . E 5 HOH A 65 565 6 HOH HOH . E 5 HOH A 66 566 138 HOH HOH . E 5 HOH A 67 567 116 HOH HOH . E 5 HOH A 68 568 63 HOH HOH . E 5 HOH A 69 569 137 HOH HOH . E 5 HOH A 70 570 184 HOH HOH . E 5 HOH A 71 571 83 HOH HOH . E 5 HOH A 72 572 178 HOH HOH . E 5 HOH A 73 573 5 HOH HOH . E 5 HOH A 74 574 20 HOH HOH . E 5 HOH A 75 575 47 HOH HOH . E 5 HOH A 76 576 86 HOH HOH . E 5 HOH A 77 577 98 HOH HOH . E 5 HOH A 78 578 9 HOH HOH . E 5 HOH A 79 579 121 HOH HOH . E 5 HOH A 80 580 196 HOH HOH . E 5 HOH A 81 581 118 HOH HOH . E 5 HOH A 82 582 89 HOH HOH . E 5 HOH A 83 583 18 HOH HOH . E 5 HOH A 84 584 171 HOH HOH . E 5 HOH A 85 585 59 HOH HOH . E 5 HOH A 86 586 104 HOH HOH . E 5 HOH A 87 587 97 HOH HOH . E 5 HOH A 88 588 34 HOH HOH . E 5 HOH A 89 589 35 HOH HOH . E 5 HOH A 90 590 80 HOH HOH . E 5 HOH A 91 591 22 HOH HOH . E 5 HOH A 92 592 28 HOH HOH . E 5 HOH A 93 593 60 HOH HOH . E 5 HOH A 94 594 1 HOH HOH . E 5 HOH A 95 595 32 HOH HOH . E 5 HOH A 96 596 23 HOH HOH . E 5 HOH A 97 597 36 HOH HOH . E 5 HOH A 98 598 162 HOH HOH . E 5 HOH A 99 599 17 HOH HOH . E 5 HOH A 100 600 42 HOH HOH . E 5 HOH A 101 601 147 HOH HOH . E 5 HOH A 102 602 112 HOH HOH . E 5 HOH A 103 603 50 HOH HOH . E 5 HOH A 104 604 139 HOH HOH . E 5 HOH A 105 605 26 HOH HOH . E 5 HOH A 106 606 129 HOH HOH . E 5 HOH A 107 607 76 HOH HOH . E 5 HOH A 108 608 14 HOH HOH . E 5 HOH A 109 609 2 HOH HOH . E 5 HOH A 110 610 30 HOH HOH . E 5 HOH A 111 611 120 HOH HOH . E 5 HOH A 112 612 39 HOH HOH . E 5 HOH A 113 613 79 HOH HOH . E 5 HOH A 114 614 92 HOH HOH . E 5 HOH A 115 615 81 HOH HOH . E 5 HOH A 116 616 73 HOH HOH . E 5 HOH A 117 617 70 HOH HOH . E 5 HOH A 118 618 48 HOH HOH . E 5 HOH A 119 619 99 HOH HOH . E 5 HOH A 120 620 193 HOH HOH . E 5 HOH A 121 621 91 HOH HOH . E 5 HOH A 122 622 88 HOH HOH . E 5 HOH A 123 623 165 HOH HOH . E 5 HOH A 124 624 27 HOH HOH . E 5 HOH A 125 625 132 HOH HOH . E 5 HOH A 126 626 19 HOH HOH . E 5 HOH A 127 627 53 HOH HOH . E 5 HOH A 128 628 77 HOH HOH . E 5 HOH A 129 629 54 HOH HOH . E 5 HOH A 130 630 85 HOH HOH . E 5 HOH A 131 631 11 HOH HOH . E 5 HOH A 132 632 101 HOH HOH . E 5 HOH A 133 633 173 HOH HOH . E 5 HOH A 134 634 142 HOH HOH . E 5 HOH A 135 635 61 HOH HOH . E 5 HOH A 136 636 161 HOH HOH . E 5 HOH A 137 637 87 HOH HOH . E 5 HOH A 138 638 113 HOH HOH . E 5 HOH A 139 639 8 HOH HOH . E 5 HOH A 140 640 187 HOH HOH . E 5 HOH A 141 641 148 HOH HOH . E 5 HOH A 142 642 93 HOH HOH . E 5 HOH A 143 643 21 HOH HOH . E 5 HOH A 144 644 3 HOH HOH . E 5 HOH A 145 645 65 HOH HOH . E 5 HOH A 146 646 67 HOH HOH . E 5 HOH A 147 647 167 HOH HOH . E 5 HOH A 148 648 94 HOH HOH . E 5 HOH A 149 649 168 HOH HOH . E 5 HOH A 150 650 157 HOH HOH . E 5 HOH A 151 651 133 HOH HOH . E 5 HOH A 152 652 69 HOH HOH . E 5 HOH A 153 653 194 HOH HOH . E 5 HOH A 154 654 166 HOH HOH . E 5 HOH A 155 655 195 HOH HOH . E 5 HOH A 156 656 149 HOH HOH . E 5 HOH A 157 657 127 HOH HOH . E 5 HOH A 158 658 192 HOH HOH . E 5 HOH A 159 659 156 HOH HOH . E 5 HOH A 160 660 119 HOH HOH . E 5 HOH A 161 661 117 HOH HOH . E 5 HOH A 162 662 186 HOH HOH . E 5 HOH A 163 663 46 HOH HOH . E 5 HOH A 164 664 152 HOH HOH . E 5 HOH A 165 665 177 HOH HOH . E 5 HOH A 166 666 164 HOH HOH . E 5 HOH A 167 667 37 HOH HOH . E 5 HOH A 168 668 110 HOH HOH . E 5 HOH A 169 669 155 HOH HOH . E 5 HOH A 170 670 172 HOH HOH . E 5 HOH A 171 671 154 HOH HOH . E 5 HOH A 172 672 170 HOH HOH . E 5 HOH A 173 673 105 HOH HOH . E 5 HOH A 174 674 103 HOH HOH . E 5 HOH A 175 675 191 HOH HOH . E 5 HOH A 176 676 141 HOH HOH . E 5 HOH A 177 677 183 HOH HOH . E 5 HOH A 178 678 146 HOH HOH . E 5 HOH A 179 679 107 HOH HOH . E 5 HOH A 180 680 176 HOH HOH . E 5 HOH A 181 681 102 HOH HOH . E 5 HOH A 182 682 150 HOH HOH . E 5 HOH A 183 683 123 HOH HOH . E 5 HOH A 184 684 125 HOH HOH . E 5 HOH A 185 685 128 HOH HOH . E 5 HOH A 186 686 169 HOH HOH . E 5 HOH A 187 687 190 HOH HOH . E 5 HOH A 188 688 174 HOH HOH . E 5 HOH A 189 689 182 HOH HOH . E 5 HOH A 190 690 145 HOH HOH . E 5 HOH A 191 691 179 HOH HOH . E 5 HOH A 192 692 100 HOH HOH . E 5 HOH A 193 693 188 HOH HOH . E 5 HOH A 194 694 163 HOH HOH . E 5 HOH A 195 695 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AKG . . . C 3 -20.745 -22.065 -3.968 1 34.68 ? C1 AKG 402 A 1 HETATM 2 O O1 AKG . . . C 3 -21.756 -22.457 -4.607 1 35.38 ? O1 AKG 402 A 1 HETATM 3 O O2 AKG . . . C 3 -20.784 -21.1 -3.169 1 37.03 ? O2 AKG 402 A 1 HETATM 4 C C2 AKG . . . C 3 -19.486 -22.781 -4.166 1 33.33 ? C2 AKG 402 A 1 HETATM 5 O O5 AKG . . . C 3 -19.524 -23.921 -4.629 1 29.81 ? O5 AKG 402 A 1 HETATM 6 C C3 AKG . . . C 3 -18.188 -22.102 -3.777 1 31.46 ? C3 AKG 402 A 1 HETATM 7 C C4 AKG . . . C 3 -16.958 -22.973 -4.034 1 28.94 ? C4 AKG 402 A 1 HETATM 8 C C5 AKG . . . C 3 -15.702 -22.35 -3.447 1 25.99 ? C5 AKG 402 A 1 HETATM 9 O O3 AKG . . . C 3 -14.627 -22.496 -4.051 1 19.19 ? O3 AKG 402 A 1 HETATM 10 O O4 AKG . . . C 3 -15.775 -21.707 -2.369 1 32.88 ? O4 AKG 402 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 397 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #