data_5OAD # _model_server_result.job_id uHav2zBkFoGFqygMzKFCCw _model_server_result.datetime_utc '2024-11-22 12:37:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oad # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":601}' # _entry.id 5OAD # _exptl.entry_id 5OAD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OAD _cell.length_a 73.171 _cell.length_b 118.46 _cell.length_c 123.77 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OAD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 144 A CYS 144 1_555 A SG CYS 157 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? disulf ? disulf2 A SG CYS 207 A CYS 207 1_555 A SG CYS 208 A CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf3 B SG CYS 144 B CYS 144 1_555 B SG CYS 157 B CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 B SG CYS 207 B CYS 207 1_555 B SG CYS 208 B CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf5 C SG CYS 144 C CYS 144 1_555 C SG CYS 157 C CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 C SG CYS 207 C CYS 207 1_555 C SG CYS 208 C CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf7 D SG CYS 144 D CYS 144 1_555 D SG CYS 157 D CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? disulf ? disulf8 D SG CYS 207 D CYS 207 1_555 D SG CYS 208 D CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf9 E SG CYS 144 E CYS 144 1_555 E SG CYS 157 E CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf10 E SG CYS 207 E CYS 207 1_555 E SG CYS 208 E CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? covale ? covale1 A ND2 ASN 91 A ASN 91 1_555 F C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale2 C ND2 ASN 91 C ASN 91 1_555 J C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale3 D ND2 ASN 91 D ASN 91 1_555 M C1 NAG . D NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale4 E ND2 ASN 91 E ASN 91 1_555 N C1 NAG . E NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 92 n n N1 C6 EPE sing 93 n n N1 C9 EPE sing 94 n n C2 C3 EPE sing 95 n n C2 H21 EPE sing 96 n n C2 H22 EPE sing 97 n n C3 N4 EPE sing 98 n n C3 H31 EPE sing 99 n n C3 H32 EPE sing 100 n n N4 C5 EPE sing 101 n n N4 C7 EPE sing 102 n n C5 C6 EPE sing 103 n n C5 H51 EPE sing 104 n n C5 H52 EPE sing 105 n n C6 H61 EPE sing 106 n n C6 H62 EPE sing 107 n n C7 C8 EPE sing 108 n n C7 H71 EPE sing 109 n n C7 H72 EPE sing 110 n n C8 O8 EPE sing 111 n n C8 H81 EPE sing 112 n n C8 H82 EPE sing 113 n n O8 HO8 EPE sing 114 n n C9 C10 EPE sing 115 n n C9 H91 EPE sing 116 n n C9 H92 EPE sing 117 n n C10 S EPE sing 118 n n C10 H101 EPE sing 119 n n C10 H102 EPE sing 120 n n S O1S EPE doub 121 n n S O2S EPE doub 122 n n S O3S EPE sing 123 n n O3S HOS3 EPE sing 124 n n # _atom_sites.entry_id 5OAD _atom_sites.fract_transf_matrix[1][1] 0.013667 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008079 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NAG A 1 301 602 NAG NAG . G 3 EPE A 1 302 601 EPE EPE . H 3 EPE B 1 601 601 EPE EPE . I 4 EDO B 1 602 601 EDO EDO . J 2 NAG C 1 301 602 NAG NAG . K 3 EPE D 1 601 601 EPE EPE . L 4 EDO D 1 602 601 EDO EDO . M 2 NAG D 1 603 602 NAG NAG . N 2 NAG E 1 301 602 NAG NAG . O 5 HOH A 1 401 108 HOH HOH . O 5 HOH A 2 402 113 HOH HOH . O 5 HOH A 3 403 36 HOH HOH . O 5 HOH A 4 404 34 HOH HOH . O 5 HOH A 5 405 76 HOH HOH . O 5 HOH A 6 406 38 HOH HOH . O 5 HOH A 7 407 85 HOH HOH . O 5 HOH A 8 408 4 HOH HOH . O 5 HOH A 9 409 37 HOH HOH . O 5 HOH A 10 410 70 HOH HOH . O 5 HOH A 11 411 3 HOH HOH . O 5 HOH A 12 412 160 HOH HOH . O 5 HOH A 13 413 144 HOH HOH . O 5 HOH A 14 414 33 HOH HOH . O 5 HOH A 15 415 161 HOH HOH . O 5 HOH A 16 416 72 HOH HOH . O 5 HOH A 17 417 163 HOH HOH . O 5 HOH A 18 418 82 HOH HOH . O 5 HOH A 19 419 120 HOH HOH . O 5 HOH A 20 420 157 HOH HOH . O 5 HOH A 21 421 63 HOH HOH . O 5 HOH A 22 422 87 HOH HOH . O 5 HOH A 23 423 132 HOH HOH . O 5 HOH A 24 424 29 HOH HOH . O 5 HOH A 25 425 121 HOH HOH . O 5 HOH A 26 426 149 HOH HOH . O 5 HOH A 27 427 117 HOH HOH . O 5 HOH A 28 428 123 HOH HOH . O 5 HOH A 29 429 127 HOH HOH . O 5 HOH A 30 430 118 HOH HOH . O 5 HOH A 31 431 128 HOH HOH . O 5 HOH A 32 432 119 HOH HOH . O 5 HOH A 33 433 1 HOH HOH . P 5 HOH B 1 701 86 HOH HOH . P 5 HOH B 2 702 126 HOH HOH . P 5 HOH B 3 703 91 HOH HOH . P 5 HOH B 4 704 154 HOH HOH . P 5 HOH B 5 705 73 HOH HOH . P 5 HOH B 6 706 164 HOH HOH . P 5 HOH B 7 707 116 HOH HOH . P 5 HOH B 8 708 104 HOH HOH . P 5 HOH B 9 709 98 HOH HOH . P 5 HOH B 10 710 150 HOH HOH . P 5 HOH B 11 711 95 HOH HOH . P 5 HOH B 12 712 30 HOH HOH . P 5 HOH B 13 713 96 HOH HOH . P 5 HOH B 14 714 103 HOH HOH . P 5 HOH B 15 715 138 HOH HOH . P 5 HOH B 16 716 27 HOH HOH . P 5 HOH B 17 717 94 HOH HOH . P 5 HOH B 18 718 111 HOH HOH . P 5 HOH B 19 719 44 HOH HOH . P 5 HOH B 20 720 112 HOH HOH . P 5 HOH B 21 721 51 HOH HOH . P 5 HOH B 22 722 153 HOH HOH . P 5 HOH B 23 723 53 HOH HOH . P 5 HOH B 24 724 67 HOH HOH . P 5 HOH B 25 725 77 HOH HOH . P 5 HOH B 26 726 26 HOH HOH . P 5 HOH B 27 727 99 HOH HOH . Q 5 HOH C 1 401 115 HOH HOH . Q 5 HOH C 2 402 137 HOH HOH . Q 5 HOH C 3 403 109 HOH HOH . Q 5 HOH C 4 404 54 HOH HOH . Q 5 HOH C 5 405 55 HOH HOH . Q 5 HOH C 6 406 129 HOH HOH . Q 5 HOH C 7 407 10 HOH HOH . Q 5 HOH C 8 408 15 HOH HOH . Q 5 HOH C 9 409 12 HOH HOH . Q 5 HOH C 10 410 88 HOH HOH . Q 5 HOH C 11 411 155 HOH HOH . Q 5 HOH C 12 412 49 HOH HOH . Q 5 HOH C 13 413 17 HOH HOH . Q 5 HOH C 14 414 122 HOH HOH . Q 5 HOH C 15 415 41 HOH HOH . Q 5 HOH C 16 416 162 HOH HOH . Q 5 HOH C 17 417 18 HOH HOH . Q 5 HOH C 18 418 16 HOH HOH . Q 5 HOH C 19 419 59 HOH HOH . Q 5 HOH C 20 420 13 HOH HOH . Q 5 HOH C 21 421 39 HOH HOH . Q 5 HOH C 22 422 50 HOH HOH . Q 5 HOH C 23 423 65 HOH HOH . Q 5 HOH C 24 424 79 HOH HOH . Q 5 HOH C 25 425 68 HOH HOH . Q 5 HOH C 26 426 69 HOH HOH . Q 5 HOH C 27 427 19 HOH HOH . Q 5 HOH C 28 428 142 HOH HOH . Q 5 HOH C 29 429 97 HOH HOH . Q 5 HOH C 30 430 106 HOH HOH . Q 5 HOH C 31 431 124 HOH HOH . Q 5 HOH C 32 432 52 HOH HOH . Q 5 HOH C 33 433 14 HOH HOH . Q 5 HOH C 34 434 141 HOH HOH . Q 5 HOH C 35 435 114 HOH HOH . Q 5 HOH C 36 436 62 HOH HOH . Q 5 HOH C 37 437 48 HOH HOH . Q 5 HOH C 38 438 57 HOH HOH . Q 5 HOH C 39 439 11 HOH HOH . Q 5 HOH C 40 440 2 HOH HOH . R 5 HOH D 1 701 130 HOH HOH . R 5 HOH D 2 702 102 HOH HOH . R 5 HOH D 3 703 42 HOH HOH . R 5 HOH D 4 704 23 HOH HOH . R 5 HOH D 5 705 92 HOH HOH . R 5 HOH D 6 706 110 HOH HOH . R 5 HOH D 7 707 24 HOH HOH . R 5 HOH D 8 708 25 HOH HOH . R 5 HOH D 9 709 89 HOH HOH . R 5 HOH D 10 710 21 HOH HOH . R 5 HOH D 11 711 22 HOH HOH . R 5 HOH D 12 712 35 HOH HOH . R 5 HOH D 13 713 134 HOH HOH . R 5 HOH D 14 714 28 HOH HOH . R 5 HOH D 15 715 147 HOH HOH . R 5 HOH D 16 716 148 HOH HOH . R 5 HOH D 17 717 58 HOH HOH . R 5 HOH D 18 718 60 HOH HOH . R 5 HOH D 19 719 125 HOH HOH . R 5 HOH D 20 720 74 HOH HOH . R 5 HOH D 21 721 75 HOH HOH . R 5 HOH D 22 722 100 HOH HOH . R 5 HOH D 23 723 45 HOH HOH . R 5 HOH D 24 724 64 HOH HOH . R 5 HOH D 25 725 56 HOH HOH . R 5 HOH D 26 726 139 HOH HOH . R 5 HOH D 27 727 151 HOH HOH . R 5 HOH D 28 728 78 HOH HOH . R 5 HOH D 29 729 133 HOH HOH . R 5 HOH D 30 730 61 HOH HOH . R 5 HOH D 31 731 20 HOH HOH . R 5 HOH D 32 732 47 HOH HOH . R 5 HOH D 33 733 159 HOH HOH . R 5 HOH D 34 734 158 HOH HOH . R 5 HOH D 35 735 131 HOH HOH . S 5 HOH E 1 401 43 HOH HOH . S 5 HOH E 2 402 105 HOH HOH . S 5 HOH E 3 403 40 HOH HOH . S 5 HOH E 4 404 5 HOH HOH . S 5 HOH E 5 405 83 HOH HOH . S 5 HOH E 6 406 90 HOH HOH . S 5 HOH E 7 407 107 HOH HOH . S 5 HOH E 8 408 8 HOH HOH . S 5 HOH E 9 409 81 HOH HOH . S 5 HOH E 10 410 80 HOH HOH . S 5 HOH E 11 411 93 HOH HOH . S 5 HOH E 12 412 32 HOH HOH . S 5 HOH E 13 413 84 HOH HOH . S 5 HOH E 14 414 31 HOH HOH . S 5 HOH E 15 415 156 HOH HOH . S 5 HOH E 16 416 7 HOH HOH . S 5 HOH E 17 417 136 HOH HOH . S 5 HOH E 18 418 66 HOH HOH . S 5 HOH E 19 419 165 HOH HOH . S 5 HOH E 20 420 9 HOH HOH . S 5 HOH E 21 421 46 HOH HOH . S 5 HOH E 22 422 143 HOH HOH . S 5 HOH E 23 423 140 HOH HOH . S 5 HOH E 24 424 146 HOH HOH . S 5 HOH E 25 425 6 HOH HOH . S 5 HOH E 26 426 152 HOH HOH . S 5 HOH E 27 427 71 HOH HOH . S 5 HOH E 28 428 101 HOH HOH . S 5 HOH E 29 429 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . H 3 18.953 -21.87 8.722 1 67.86 ? N1 EPE 601 B 1 HETATM 2 C C2 EPE . . . H 3 19.633 -20.829 7.939 1 69.78 ? C2 EPE 601 B 1 HETATM 3 C C3 EPE . . . H 3 21.147 -21.041 7.911 1 71.33 ? C3 EPE 601 B 1 HETATM 4 N N4 EPE . . . H 3 21.702 -21.142 9.289 1 72.79 ? N4 EPE 601 B 1 HETATM 5 C C5 EPE . . . H 3 21.021 -22.221 10.035 1 72.52 ? C5 EPE 601 B 1 HETATM 6 C C6 EPE . . . H 3 19.526 -21.986 10.065 1 71.46 ? C6 EPE 601 B 1 HETATM 7 C C7 EPE . . . H 3 23.167 -21.391 9.426 1 75.65 ? C7 EPE 601 B 1 HETATM 8 C C8 EPE . . . H 3 24.037 -21.378 8.165 1 75.97 ? C8 EPE 601 B 1 HETATM 9 O O8 EPE . . . H 3 23.959 -20.154 7.443 1 75.16 ? O8 EPE 601 B 1 HETATM 10 C C9 EPE . . . H 3 17.515 -21.607 8.876 1 66.05 ? C9 EPE 601 B 1 HETATM 11 C C10 EPE . . . H 3 16.838 -22.883 8.415 1 66.22 ? C10 EPE 601 B 1 HETATM 12 S S EPE . . . H 3 16.5 -22.794 6.789 1 76.59 ? S EPE 601 B 1 HETATM 13 O O1S EPE . . . H 3 16.439 -21.408 6.249 1 65.61 ? O1S EPE 601 B 1 HETATM 14 O O2S EPE . . . H 3 17.642 -23.49 6.148 1 68.1 ? O2S EPE 601 B 1 HETATM 15 O O3S EPE . . . H 3 15.184 -23.453 6.527 1 68.35 ? O3S EPE 601 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #