data_5OAL # _model_server_result.job_id xQcfClCcLExDB0-W8uGR4g _model_server_result.datetime_utc '2024-11-22 12:28:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":301}' # _entry.id 5OAL # _exptl.entry_id 5OAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.209 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ARGININE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5OAL _cell.length_a 130.9 _cell.length_b 130.9 _cell.length_c 190.139 _cell.Z_PDB 45 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA pentameric 5 author_and_software_defined_assembly 1 PISA pentameric 5 author_and_software_defined_assembly 2 PISA pentameric 5 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,P,Q,R,S,T 1 1 F,G,H,I,J,U,V,W,X,Y 2 1 K,L,M,N,O,Z,AA,BA,CA,DA,EA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id DA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 144 A CYS 144 1_555 A SG CYS 157 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf2 A SG CYS 207 A CYS 207 1_555 A SG CYS 208 A CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf3 B SG CYS 144 B CYS 144 1_555 B SG CYS 157 B CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? disulf ? disulf4 B SG CYS 207 B CYS 207 1_555 B SG CYS 208 B CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf5 C SG CYS 144 C CYS 144 1_555 C SG CYS 157 C CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 C SG CYS 207 C CYS 207 1_555 C SG CYS 208 C CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf7 D SG CYS 144 D CYS 144 1_555 D SG CYS 157 D CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf8 D SG CYS 207 D CYS 207 1_555 D SG CYS 208 D CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf9 E SG CYS 144 E CYS 144 1_555 E SG CYS 157 E CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf10 E SG CYS 207 E CYS 207 1_555 E SG CYS 208 E CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? disulf ? disulf11 F SG CYS 144 F CYS 144 1_555 F SG CYS 157 F CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf12 F SG CYS 207 F CYS 207 1_555 F SG CYS 208 F CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf13 G SG CYS 144 G CYS 144 1_555 G SG CYS 157 G CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf14 H SG CYS 144 H CYS 144 1_555 H SG CYS 157 H CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf15 H SG CYS 207 H CYS 207 1_555 H SG CYS 208 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? disulf ? disulf16 I SG CYS 144 I CYS 144 1_555 I SG CYS 157 I CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf17 I SG CYS 207 I CYS 207 1_555 I SG CYS 208 I CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? disulf ? disulf18 J SG CYS 144 J CYS 144 1_555 J SG CYS 157 J CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf19 J SG CYS 207 J CYS 207 1_555 J SG CYS 208 J CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? disulf ? disulf20 K SG CYS 144 K CYS 144 1_555 K SG CYS 157 K CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf21 K SG CYS 207 K CYS 207 1_555 K SG CYS 208 K CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf22 L SG CYS 144 L CYS 144 1_555 L SG CYS 157 L CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf23 L SG CYS 207 L CYS 207 1_555 L SG CYS 208 L CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? disulf ? disulf24 M SG CYS 144 M CYS 144 1_555 M SG CYS 157 M CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf25 M SG CYS 207 M CYS 207 1_555 M SG CYS 208 M CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? disulf ? disulf26 N SG CYS 144 N CYS 144 1_555 N SG CYS 157 N CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf27 N SG CYS 207 N CYS 207 1_555 N SG CYS 208 N CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf28 O SG CYS 144 O CYS 144 1_555 O SG CYS 157 O CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf29 O SG CYS 207 O CYS 207 1_555 O SG CYS 208 O CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? # _chem_comp.formula 'C6 H15 N4 O2 1' _chem_comp.formula_weight 175.209 _chem_comp.id ARG _chem_comp.mon_nstd_flag y _chem_comp.name ARGININE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ARG sing 13 n n N H ARG sing 14 n n N H2 ARG sing 15 n n CA C ARG sing 16 n n CA CB ARG sing 17 n n CA HA ARG sing 18 n n C O ARG doub 19 n n C OXT ARG sing 20 n n CB CG ARG sing 21 n n CB HB2 ARG sing 22 n n CB HB3 ARG sing 23 n n CG CD ARG sing 24 n n CG HG2 ARG sing 25 n n CG HG3 ARG sing 26 n n CD NE ARG sing 27 n n CD HD2 ARG sing 28 n n CD HD3 ARG sing 29 n n NE CZ ARG sing 30 n n NE HE ARG sing 31 n n CZ NH1 ARG sing 32 n n CZ NH2 ARG doub 33 n n NH1 HH11 ARG sing 34 n n NH1 HH12 ARG sing 35 n n NH2 HH21 ARG sing 36 n n NH2 HH22 ARG sing 37 n n OXT HXT ARG sing 38 n n # _atom_sites.entry_id 5OAL _atom_sites.fract_transf_matrix[1][1] 0.007639 _atom_sites.fract_transf_matrix[1][2] 0.004411 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008821 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005259 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 2 SY9 A 1 401 401 SY9 SY9 . Q 2 SY9 C 1 401 401 SY9 SY9 . R 2 SY9 C 1 402 402 SY9 SY9 . S 2 SY9 D 1 401 401 SY9 SY9 . T 2 SY9 E 1 401 401 SY9 SY9 . U 2 SY9 G 1 401 401 SY9 SY9 . V 2 SY9 H 1 301 402 SY9 SY9 . W 2 SY9 H 1 302 401 SY9 SY9 . X 2 SY9 I 1 301 402 SY9 SY9 . Y 2 SY9 J 1 401 401 SY9 SY9 . Z 2 SY9 K 1 401 401 SY9 SY9 . AA 2 SY9 K 1 402 401 SY9 SY9 . BA 2 SY9 L 1 401 401 SY9 SY9 . CA 2 SY9 M 1 401 401 SY9 SY9 . DA 3 ARG N 1 301 225 ARG ARG . EA 2 SY9 N 1 302 401 SY9 SY9 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ARG . . . DA 3 30.128 -11.462 -32.622 1 83.03 ? N ARG 301 N 1 HETATM 2 C CA ARG . . . DA 3 29.405 -12.643 -31.971 1 85.8 ? CA ARG 301 N 1 HETATM 3 C C ARG . . . DA 3 30.331 -13.508 -31.13 1 76.81 ? C ARG 301 N 1 HETATM 4 O O ARG . . . DA 3 31.431 -13.849 -31.577 1 68.73 ? O ARG 301 N 1 HETATM 5 C CB ARG . . . DA 3 28.713 -13.596 -32.987 1 91.03 ? CB ARG 301 N 1 HETATM 6 C CG ARG . . . DA 3 27.94 -13.049 -34.219 1 84.85 ? CG ARG 301 N 1 HETATM 7 C CD ARG . . . DA 3 26.976 -14.137 -34.732 1 83.39 ? CD ARG 301 N 1 HETATM 8 N NE ARG . . . DA 3 26.001 -13.671 -35.723 1 81.88 ? NE ARG 301 N 1 HETATM 9 C CZ ARG . . . DA 3 25.388 -14.411 -36.673 1 94.9 ? CZ ARG 301 N 1 HETATM 10 N NH1 ARG . . . DA 3 25.621 -15.732 -36.832 1 98.1 ? NH1 ARG 301 N 1 HETATM 11 N NH2 ARG . . . DA 3 24.522 -13.804 -37.504 1 96.58 ? NH2 ARG 301 N 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #