data_5OAL
#
_model_server_result.job_id            DEwdgnHWdlx6i9NIMW_-dw 
_model_server_result.datetime_utc      '2024-11-22 12:07:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oal 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CA","auth_seq_id":401}' 
#
_entry.id    5OAL 
#
_exptl.entry_id    5OAL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              334.412 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            STRYCHNINE 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5OAL 
_cell.length_a            130.9 
_cell.length_b            130.9 
_cell.length_c            190.139 
_cell.Z_PDB               45 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OAL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA pentameric 5 author_and_software_defined_assembly 1 
PISA pentameric 5 author_and_software_defined_assembly 2 
PISA pentameric 5 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,P,Q,R,S,T 1 1 
F,G,H,I,J,U,V,W,X,Y 2 1 
K,L,M,N,O,Z,AA,BA,CA,DA,EA 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 CA N N 
? 2 EA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 144 A CYS 144 1_555 A SG CYS 157 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
disulf ? disulf2 A SG CYS 207 A CYS 207 1_555 A SG CYS 208 A CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
disulf ? disulf3 B SG CYS 144 B CYS 144 1_555 B SG CYS 157 B CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
disulf ? disulf4 B SG CYS 207 B CYS 207 1_555 B SG CYS 208 B CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf5 C SG CYS 144 C CYS 144 1_555 C SG CYS 157 C CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf6 C SG CYS 207 C CYS 207 1_555 C SG CYS 208 C CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
disulf ? disulf7 D SG CYS 144 D CYS 144 1_555 D SG CYS 157 D CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf8 D SG CYS 207 D CYS 207 1_555 D SG CYS 208 D CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
disulf ? disulf9 E SG CYS 144 E CYS 144 1_555 E SG CYS 157 E CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
disulf ? disulf10 E SG CYS 207 E CYS 207 1_555 E SG CYS 208 E CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
disulf ? disulf11 F SG CYS 144 F CYS 144 1_555 F SG CYS 157 F CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
disulf ? disulf12 F SG CYS 207 F CYS 207 1_555 F SG CYS 208 F CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
disulf ? disulf13 G SG CYS 144 G CYS 144 1_555 G SG CYS 157 G CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
disulf ? disulf14 H SG CYS 144 H CYS 144 1_555 H SG CYS 157 H CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf15 H SG CYS 207 H CYS 207 1_555 H SG CYS 208 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
disulf ? disulf16 I SG CYS 144 I CYS 144 1_555 I SG CYS 157 I CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf17 I SG CYS 207 I CYS 207 1_555 I SG CYS 208 I CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
disulf ? disulf18 J SG CYS 144 J CYS 144 1_555 J SG CYS 157 J CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf19 J SG CYS 207 J CYS 207 1_555 J SG CYS 208 J CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
disulf ? disulf20 K SG CYS 144 K CYS 144 1_555 K SG CYS 157 K CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf21 K SG CYS 207 K CYS 207 1_555 K SG CYS 208 K CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
disulf ? disulf22 L SG CYS 144 L CYS 144 1_555 L SG CYS 157 L CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf23 L SG CYS 207 L CYS 207 1_555 L SG CYS 208 L CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
disulf ? disulf24 M SG CYS 144 M CYS 144 1_555 M SG CYS 157 M CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf25 M SG CYS 207 M CYS 207 1_555 M SG CYS 208 M CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
disulf ? disulf26 N SG CYS 144 N CYS 144 1_555 N SG CYS 157 N CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf27 N SG CYS 207 N CYS 207 1_555 N SG CYS 208 N CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
disulf ? disulf28 O SG CYS 144 O CYS 144 1_555 O SG CYS 157 O CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
disulf ? disulf29 O SG CYS 207 O CYS 207 1_555 O SG CYS 208 O CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
#
_chem_comp.formula           'C21 H22 N2 O2' 
_chem_comp.formula_weight    334.412 
_chem_comp.id                SY9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              STRYCHNINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAV CAU SY9 sing 288 n n 
CAV CAG SY9 sing 289 n n 
CAV NAY SY9 sing 290 n n 
CAU CAT SY9 sing 291 n n 
CAT CAN SY9 sing 292 n n 
CAT CAR SY9 sing 293 n n 
CAN CAK SY9 sing 294 n n 
CAN CAM SY9 sing 295 n n 
CAK NAH SY9 sing 296 n n 
CAK CAG SY9 sing 297 n n 
NAH CAA SY9 sing 298 n n 
NAH CAI SY9 sing 299 n n 
CAA CAF SY9 sing 300 n y 
CAA CAB SY9 doub 301 n y 
CAF CAE SY9 doub 302 n y 
CAE CAD SY9 sing 303 n y 
CAD CAC SY9 doub 304 n y 
CAC CAB SY9 sing 305 n y 
CAB CAG SY9 sing 306 n n 
CAG CAW SY9 sing 307 n n 
CAW CAX SY9 sing 308 n n 
CAX NAY SY9 sing 309 n n 
NAY CAS SY9 sing 310 n n 
CAS CAR SY9 sing 311 n n 
CAR CAQ SY9 doub 312 n n 
CAQ CAP SY9 sing 313 n n 
CAP OAO SY9 sing 314 n n 
OAO CAM SY9 sing 315 n n 
CAM CAL SY9 sing 316 n n 
CAL CAI SY9 sing 317 n n 
CAI OAJ SY9 doub 318 n n 
CAV HAV SY9 sing 319 n n 
CAU HAU1 SY9 sing 320 n n 
CAU HAU2 SY9 sing 321 n n 
CAT HAT SY9 sing 322 n n 
CAN HAN SY9 sing 323 n n 
CAK HAK SY9 sing 324 n n 
CAM HAM SY9 sing 325 n n 
CAF HAF SY9 sing 326 n n 
CAE HAE SY9 sing 327 n n 
CAD HAD SY9 sing 328 n n 
CAC HAC SY9 sing 329 n n 
CAW HAW1 SY9 sing 330 n n 
CAW HAW2 SY9 sing 331 n n 
CAX HAX1 SY9 sing 332 n n 
CAX HAX2 SY9 sing 333 n n 
CAS HAS1 SY9 sing 334 n n 
CAS HAS2 SY9 sing 335 n n 
CAQ HAQ SY9 sing 336 n n 
CAP HAP1 SY9 sing 337 n n 
CAP HAP2 SY9 sing 338 n n 
CAL HAL1 SY9 sing 339 n n 
CAL HAL2 SY9 sing 340 n n 
#
_atom_sites.entry_id                     5OAL 
_atom_sites.fract_transf_matrix[1][1]    0.007639 
_atom_sites.fract_transf_matrix[1][2]    0.004411 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008821 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005259 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
P 2 SY9 A 1 401 401 SY9 SY9 . 
Q 2 SY9 C 1 401 401 SY9 SY9 . 
R 2 SY9 C 1 402 402 SY9 SY9 . 
S 2 SY9 D 1 401 401 SY9 SY9 . 
T 2 SY9 E 1 401 401 SY9 SY9 . 
U 2 SY9 G 1 401 401 SY9 SY9 . 
V 2 SY9 H 1 301 402 SY9 SY9 . 
W 2 SY9 H 1 302 401 SY9 SY9 . 
X 2 SY9 I 1 301 402 SY9 SY9 . 
Y 2 SY9 J 1 401 401 SY9 SY9 . 
Z 2 SY9 K 1 401 401 SY9 SY9 . 
AA 2 SY9 K 1 402 401 SY9 SY9 . 
BA 2 SY9 L 1 401 401 SY9 SY9 . 
CA 2 SY9 M 1 401 401 SY9 SY9 . 
DA 3 ARG N 1 301 225 ARG ARG . 
EA 2 SY9 N 1 302 401 SY9 SY9 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAV SY9 . . . CA 2 30.098 18.256 -27.21 1 68.65 ? CAV SY9 401 M 1 
HETATM 2 C CAU SY9 . . . CA 2 31.342 18.496 -28.042 1 76.48 ? CAU SY9 401 M 1 
HETATM 3 C CAT SY9 . . . CA 2 32.221 17.232 -28.02 1 73.11 ? CAT SY9 401 M 1 
HETATM 4 C CAN SY9 . . . CA 2 31.446 16.136 -28.767 1 76.29 ? CAN SY9 401 M 1 
HETATM 5 C CAK SY9 . . . CA 2 30.065 15.857 -28.17 1 74.15 ? CAK SY9 401 M 1 
HETATM 6 N NAH SY9 . . . CA 2 29.247 15.277 -29.259 1 80.85 ? NAH SY9 401 M 1 
HETATM 7 C CAA SY9 . . . CA 2 28.319 16.229 -29.7 1 79.46 ? CAA SY9 401 M 1 
HETATM 8 C CAF SY9 . . . CA 2 27.588 16.24 -30.884 1 87.11 ? CAF SY9 401 M 1 
HETATM 9 C CAE SY9 . . . CA 2 26.918 17.397 -31.238 1 95.01 ? CAE SY9 401 M 1 
HETATM 10 C CAD SY9 . . . CA 2 26.935 18.5 -30.402 1 107.45 ? CAD SY9 401 M 1 
HETATM 11 C CAC SY9 . . . CA 2 27.624 18.464 -29.196 1 97.59 ? CAC SY9 401 M 1 
HETATM 12 C CAB SY9 . . . CA 2 28.329 17.323 -28.85 1 75.44 ? CAB SY9 401 M 1 
HETATM 13 C CAG SY9 . . . CA 2 29.243 17.065 -27.683 1 71.78 ? CAG SY9 401 M 1 
HETATM 14 C CAW SY9 . . . CA 2 28.518 16.696 -26.39 1 78.47 ? CAW SY9 401 M 1 
HETATM 15 C CAX SY9 . . . CA 2 29.685 16.738 -25.414 1 75.96 ? CAX SY9 401 M 1 
HETATM 16 N NAY SY9 . . . CA 2 30.442 17.941 -25.815 1 71.01 ? NAY SY9 401 M 1 
HETATM 17 C CAS SY9 . . . CA 2 31.888 17.799 -25.593 1 75.96 ? CAS SY9 401 M 1 
HETATM 18 C CAR SY9 . . . CA 2 32.574 16.905 -26.59 1 72.93 ? CAR SY9 401 M 1 
HETATM 19 C CAQ SY9 . . . CA 2 33.331 15.881 -26.241 1 73.82 ? CAQ SY9 401 M 1 
HETATM 20 C CAP SY9 . . . CA 2 33.722 14.783 -27.173 1 81.4 ? CAP SY9 401 M 1 
HETATM 21 O OAO SY9 . . . CA 2 32.568 14.176 -27.775 1 84.32 ? OAO SY9 401 M 1 
HETATM 22 C CAM SY9 . . . CA 2 32.123 14.799 -28.982 1 76.68 ? CAM SY9 401 M 1 
HETATM 23 C CAL SY9 . . . CA 2 31.143 13.806 -29.588 1 86.49 ? CAL SY9 401 M 1 
HETATM 24 C CAI SY9 . . . CA 2 29.805 14.331 -30.051 1 86.56 ? CAI SY9 401 M 1 
HETATM 25 O OAJ SY9 . . . CA 2 29.268 13.936 -31.062 1 106.11 ? OAJ SY9 401 M 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    63 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           25 
#