data_5OAL # _model_server_result.job_id 3TNVqzvk4s6FExt9NNqCEg _model_server_result.datetime_utc '2024-11-22 12:23:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":401}' # _entry.id 5OAL # _exptl.entry_id 5OAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 334.412 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STRYCHNINE _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5OAL _cell.length_a 130.9 _cell.length_b 130.9 _cell.length_c 190.139 _cell.Z_PDB 45 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA pentameric 5 author_and_software_defined_assembly 1 PISA pentameric 5 author_and_software_defined_assembly 2 PISA pentameric 5 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,P,Q,R,S,T 1 1 F,G,H,I,J,U,V,W,X,Y 2 1 K,L,M,N,O,Z,AA,BA,CA,DA,EA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 144 A CYS 144 1_555 A SG CYS 157 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf2 A SG CYS 207 A CYS 207 1_555 A SG CYS 208 A CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf3 B SG CYS 144 B CYS 144 1_555 B SG CYS 157 B CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? disulf ? disulf4 B SG CYS 207 B CYS 207 1_555 B SG CYS 208 B CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf5 C SG CYS 144 C CYS 144 1_555 C SG CYS 157 C CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 C SG CYS 207 C CYS 207 1_555 C SG CYS 208 C CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf7 D SG CYS 144 D CYS 144 1_555 D SG CYS 157 D CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf8 D SG CYS 207 D CYS 207 1_555 D SG CYS 208 D CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf9 E SG CYS 144 E CYS 144 1_555 E SG CYS 157 E CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf10 E SG CYS 207 E CYS 207 1_555 E SG CYS 208 E CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? disulf ? disulf11 F SG CYS 144 F CYS 144 1_555 F SG CYS 157 F CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf12 F SG CYS 207 F CYS 207 1_555 F SG CYS 208 F CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf13 G SG CYS 144 G CYS 144 1_555 G SG CYS 157 G CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf14 H SG CYS 144 H CYS 144 1_555 H SG CYS 157 H CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf15 H SG CYS 207 H CYS 207 1_555 H SG CYS 208 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? disulf ? disulf16 I SG CYS 144 I CYS 144 1_555 I SG CYS 157 I CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf17 I SG CYS 207 I CYS 207 1_555 I SG CYS 208 I CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? disulf ? disulf18 J SG CYS 144 J CYS 144 1_555 J SG CYS 157 J CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf19 J SG CYS 207 J CYS 207 1_555 J SG CYS 208 J CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? disulf ? disulf20 K SG CYS 144 K CYS 144 1_555 K SG CYS 157 K CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf21 K SG CYS 207 K CYS 207 1_555 K SG CYS 208 K CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf22 L SG CYS 144 L CYS 144 1_555 L SG CYS 157 L CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf23 L SG CYS 207 L CYS 207 1_555 L SG CYS 208 L CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? disulf ? disulf24 M SG CYS 144 M CYS 144 1_555 M SG CYS 157 M CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf25 M SG CYS 207 M CYS 207 1_555 M SG CYS 208 M CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? disulf ? disulf26 N SG CYS 144 N CYS 144 1_555 N SG CYS 157 N CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf27 N SG CYS 207 N CYS 207 1_555 N SG CYS 208 N CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf28 O SG CYS 144 O CYS 144 1_555 O SG CYS 157 O CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf29 O SG CYS 207 O CYS 207 1_555 O SG CYS 208 O CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? # _chem_comp.formula 'C21 H22 N2 O2' _chem_comp.formula_weight 334.412 _chem_comp.id SY9 _chem_comp.mon_nstd_flag . _chem_comp.name STRYCHNINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAV CAU SY9 sing 288 n n CAV CAG SY9 sing 289 n n CAV NAY SY9 sing 290 n n CAU CAT SY9 sing 291 n n CAT CAN SY9 sing 292 n n CAT CAR SY9 sing 293 n n CAN CAK SY9 sing 294 n n CAN CAM SY9 sing 295 n n CAK NAH SY9 sing 296 n n CAK CAG SY9 sing 297 n n NAH CAA SY9 sing 298 n n NAH CAI SY9 sing 299 n n CAA CAF SY9 sing 300 n y CAA CAB SY9 doub 301 n y CAF CAE SY9 doub 302 n y CAE CAD SY9 sing 303 n y CAD CAC SY9 doub 304 n y CAC CAB SY9 sing 305 n y CAB CAG SY9 sing 306 n n CAG CAW SY9 sing 307 n n CAW CAX SY9 sing 308 n n CAX NAY SY9 sing 309 n n NAY CAS SY9 sing 310 n n CAS CAR SY9 sing 311 n n CAR CAQ SY9 doub 312 n n CAQ CAP SY9 sing 313 n n CAP OAO SY9 sing 314 n n OAO CAM SY9 sing 315 n n CAM CAL SY9 sing 316 n n CAL CAI SY9 sing 317 n n CAI OAJ SY9 doub 318 n n CAV HAV SY9 sing 319 n n CAU HAU1 SY9 sing 320 n n CAU HAU2 SY9 sing 321 n n CAT HAT SY9 sing 322 n n CAN HAN SY9 sing 323 n n CAK HAK SY9 sing 324 n n CAM HAM SY9 sing 325 n n CAF HAF SY9 sing 326 n n CAE HAE SY9 sing 327 n n CAD HAD SY9 sing 328 n n CAC HAC SY9 sing 329 n n CAW HAW1 SY9 sing 330 n n CAW HAW2 SY9 sing 331 n n CAX HAX1 SY9 sing 332 n n CAX HAX2 SY9 sing 333 n n CAS HAS1 SY9 sing 334 n n CAS HAS2 SY9 sing 335 n n CAQ HAQ SY9 sing 336 n n CAP HAP1 SY9 sing 337 n n CAP HAP2 SY9 sing 338 n n CAL HAL1 SY9 sing 339 n n CAL HAL2 SY9 sing 340 n n # _atom_sites.entry_id 5OAL _atom_sites.fract_transf_matrix[1][1] 0.007639 _atom_sites.fract_transf_matrix[1][2] 0.004411 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008821 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005259 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 2 SY9 A 1 401 401 SY9 SY9 . Q 2 SY9 C 1 401 401 SY9 SY9 . R 2 SY9 C 1 402 402 SY9 SY9 . S 2 SY9 D 1 401 401 SY9 SY9 . T 2 SY9 E 1 401 401 SY9 SY9 . U 2 SY9 G 1 401 401 SY9 SY9 . V 2 SY9 H 1 301 402 SY9 SY9 . W 2 SY9 H 1 302 401 SY9 SY9 . X 2 SY9 I 1 301 402 SY9 SY9 . Y 2 SY9 J 1 401 401 SY9 SY9 . Z 2 SY9 K 1 401 401 SY9 SY9 . AA 2 SY9 K 1 402 401 SY9 SY9 . BA 2 SY9 L 1 401 401 SY9 SY9 . CA 2 SY9 M 1 401 401 SY9 SY9 . DA 3 ARG N 1 301 225 ARG ARG . EA 2 SY9 N 1 302 401 SY9 SY9 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAV SY9 . . . U 2 29.377 -49.888 -2.356 1 90.88 ? CAV SY9 401 G 1 HETATM 2 C CAU SY9 . . . U 2 30.444 -49.309 -1.439 1 99.2 ? CAU SY9 401 G 1 HETATM 3 C CAT SY9 . . . U 2 31.357 -50.449 -0.965 1 98.35 ? CAT SY9 401 G 1 HETATM 4 C CAN SY9 . . . U 2 32.113 -50.935 -2.217 1 103.13 ? CAN SY9 401 G 1 HETATM 5 C CAK SY9 . . . U 2 31.157 -51.535 -3.248 1 100.63 ? CAK SY9 401 G 1 HETATM 6 N NAH SY9 . . . U 2 31.898 -51.609 -4.53 1 100.53 ? NAH SY9 401 G 1 HETATM 7 C CAA SY9 . . . U 2 31.571 -50.519 -5.298 1 92.29 ? CAA SY9 401 G 1 HETATM 8 C CAF SY9 . . . U 2 32.276 -49.998 -6.373 1 86.09 ? CAF SY9 401 G 1 HETATM 9 C CAE SY9 . . . U 2 31.848 -48.793 -6.893 1 87.39 ? CAE SY9 401 G 1 HETATM 10 C CAD SY9 . . . U 2 30.735 -48.145 -6.364 1 84.23 ? CAD SY9 401 G 1 HETATM 11 C CAC SY9 . . . U 2 30.025 -48.686 -5.302 1 75.8 ? CAC SY9 401 G 1 HETATM 12 C CAB SY9 . . . U 2 30.449 -49.884 -4.763 1 84.84 ? CAB SY9 401 G 1 HETATM 13 C CAG SY9 . . . U 2 29.918 -50.665 -3.58 1 91.97 ? CAG SY9 401 G 1 HETATM 14 C CAW SY9 . . . U 2 28.692 -51.538 -3.904 1 93.57 ? CAW SY9 401 G 1 HETATM 15 C CAX SY9 . . . U 2 28.257 -52.012 -2.519 1 87.24 ? CAX SY9 401 G 1 HETATM 16 N NAY SY9 . . . U 2 28.507 -50.867 -1.632 1 92.32 ? NAY SY9 401 G 1 HETATM 17 C CAS SY9 . . . U 2 29.036 -51.256 -0.304 1 87.52 ? CAS SY9 401 G 1 HETATM 18 C CAR SY9 . . . U 2 30.517 -51.528 -0.294 1 91.57 ? CAR SY9 401 G 1 HETATM 19 C CAQ SY9 . . . U 2 31.039 -52.661 0.147 1 95.6 ? CAQ SY9 401 G 1 HETATM 20 C CAP SY9 . . . U 2 32.497 -52.998 0.006 1 111.27 ? CAP SY9 401 G 1 HETATM 21 O OAO SY9 . . . U 2 32.912 -53.139 -1.374 1 115.34 ? OAO SY9 401 G 1 HETATM 22 C CAM SY9 . . . U 2 33.275 -51.915 -2.022 1 105.19 ? CAM SY9 401 G 1 HETATM 23 C CAL SY9 . . . U 2 33.913 -52.304 -3.384 1 97.19 ? CAL SY9 401 G 1 HETATM 24 C CAI SY9 . . . U 2 33.059 -52.302 -4.625 1 96.84 ? CAI SY9 401 G 1 HETATM 25 O OAJ SY9 . . . U 2 33.438 -52.794 -5.674 1 88.5 ? OAJ SY9 401 G 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 25 #