data_5OAM
#
_model_server_result.job_id            3PXOuhLN--ztRxLiuY2aBQ 
_model_server_result.datetime_utc      '2024-12-12 15:46:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oam 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":503}' 
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_entry.id    5OAM 
#
_exptl.entry_id    5OAM 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            E 
_struct_conn.ptnr1_label_atom_id            MG 
_struct_conn.ptnr1_label_comp_id            MG 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             MG 
_struct_conn.ptnr1_auth_seq_id              502 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            F 
_struct_conn.ptnr2_label_atom_id            O2G 
_struct_conn.ptnr2_label_comp_id            GTP 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             GTP 
_struct_conn.ptnr2_auth_seq_id              503 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.448 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 174 n n 
PG O2G GTP sing 175 n n 
PG O3G GTP sing 176 n n 
PG O3B GTP sing 177 n n 
O2G HOG2 GTP sing 178 n n 
O3G HOG3 GTP sing 179 n n 
O3B PB GTP sing 180 n n 
PB O1B GTP doub 181 n n 
PB O2B GTP sing 182 n n 
PB O3A GTP sing 183 n n 
O2B HOB2 GTP sing 184 n n 
O3A PA GTP sing 185 n n 
PA O1A GTP doub 186 n n 
PA O2A GTP sing 187 n n 
PA O5' GTP sing 188 n n 
O2A HOA2 GTP sing 189 n n 
O5' C5' GTP sing 190 n n 
C5' C4' GTP sing 191 n n 
C5' H5' GTP sing 192 n n 
C5' "H5''" GTP sing 193 n n 
C4' O4' GTP sing 194 n n 
C4' C3' GTP sing 195 n n 
C4' H4' GTP sing 196 n n 
O4' C1' GTP sing 197 n n 
C3' O3' GTP sing 198 n n 
C3' C2' GTP sing 199 n n 
C3' H3' GTP sing 200 n n 
O3' HO3' GTP sing 201 n n 
C2' O2' GTP sing 202 n n 
C2' C1' GTP sing 203 n n 
C2' H2' GTP sing 204 n n 
O2' HO2' GTP sing 205 n n 
C1' N9 GTP sing 206 n n 
C1' H1' GTP sing 207 n n 
N9 C8 GTP sing 208 n y 
N9 C4 GTP sing 209 n y 
C8 N7 GTP doub 210 n y 
C8 H8 GTP sing 211 n n 
N7 C5 GTP sing 212 n y 
C5 C6 GTP sing 213 n n 
C5 C4 GTP doub 214 n y 
C6 O6 GTP doub 215 n n 
C6 N1 GTP sing 216 n n 
N1 C2 GTP sing 217 n n 
N1 HN1 GTP sing 218 n n 
C2 N2 GTP sing 219 n n 
C2 N3 GTP doub 220 n n 
N2 HN21 GTP sing 221 n n 
N2 HN22 GTP sing 222 n n 
N3 C4 GTP sing 223 n n 
#
_atom_sites.entry_id                     5OAM 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 ZN A 1 501 900 ZN ZN . 
E 5 MG A 1 502 501 MG MG . 
F 6 GTP A 1 503 500 GTP GTP . 
G 7 GDP B 1 600 600 GDP GDP . 
H 8 TA1 B 1 601 601 TA1 TA1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . F 6 189.505 319.651 242.778 1 29.97 ? PG GTP 503 A 1 
HETATM 2 O O1G GTP . . . F 6 189.067 321.075 243.148 1 34.97 ? O1G GTP 503 A 1 
HETATM 3 O O2G GTP . . . F 6 190.783 319.236 243.477 1 28.7 ? O2G GTP 503 A 1 
HETATM 4 O O3G GTP . . . F 6 188.315 318.786 243.181 1 32.1 ? O3G GTP 503 A 1 
HETATM 5 O O3B GTP . . . F 6 189.869 319.468 241.171 1 35.17 ? O3B GTP 503 A 1 
HETATM 6 P PB GTP . . . F 6 190.385 318.082 240.441 1 41.4 ? PB GTP 503 A 1 
HETATM 7 O O1B GTP . . . F 6 189.429 317.862 239.279 1 42.02 ? O1B GTP 503 A 1 
HETATM 8 O O2B GTP . . . F 6 191.813 318.148 240.163 1 41.17 ? O2B GTP 503 A 1 
HETATM 9 O O3A GTP . . . F 6 190.013 316.969 241.42 1 39.24 ? O3A GTP 503 A 1 
HETATM 10 P PA GTP . . . F 6 190.371 315.495 241.586 1 41.34 ? PA GTP 503 A 1 
HETATM 11 O O1A GTP . . . F 6 191.829 315.275 241.541 1 44.48 ? O1A GTP 503 A 1 
HETATM 12 O O2A GTP . . . F 6 189.677 315.001 242.809 1 43.37 ? O2A GTP 503 A 1 
HETATM 13 O O5' GTP . . . F 6 189.628 314.78 240.304 1 34.27 ? O5' GTP 503 A 1 
HETATM 14 C C5' GTP . . . F 6 189.835 313.379 240.259 1 25.47 ? C5' GTP 503 A 1 
HETATM 15 C C4' GTP . . . F 6 189.183 312.653 239.126 1 17.26 ? C4' GTP 503 A 1 
HETATM 16 O O4' GTP . . . F 6 190.053 312.635 237.965 1 18.2 ? O4' GTP 503 A 1 
HETATM 17 C C3' GTP . . . F 6 189.001 311.207 239.529 1 18.14 ? C3' GTP 503 A 1 
HETATM 18 O O3' GTP . . . F 6 187.93 310.642 238.808 1 19.98 ? O3' GTP 503 A 1 
HETATM 19 C C2' GTP . . . F 6 190.353 310.609 239.171 1 17.5 ? C2' GTP 503 A 1 
HETATM 20 O O2' GTP . . . F 6 190.2 309.211 238.907 1 19.33 ? O2' GTP 503 A 1 
HETATM 21 C C1' GTP . . . F 6 190.778 311.397 237.922 1 18.43 ? C1' GTP 503 A 1 
HETATM 22 N N9 GTP . . . F 6 192.214 311.711 237.827 1 9.96 ? N9 GTP 503 A 1 
HETATM 23 C C8 GTP . . . F 6 192.97 312.411 238.736 1 11.6 ? C8 GTP 503 A 1 
HETATM 24 N N7 GTP . . . F 6 194.221 312.537 238.386 1 7.31 ? N7 GTP 503 A 1 
HETATM 25 C C5 GTP . . . F 6 194.309 311.874 237.186 1 2 ? C5 GTP 503 A 1 
HETATM 26 C C6 GTP . . . F 6 195.401 311.666 236.345 1 3.48 ? C6 GTP 503 A 1 
HETATM 27 O O6 GTP . . . F 6 196.548 312.069 236.523 1 2.56 ? O6 GTP 503 A 1 
HETATM 28 N N1 GTP . . . F 6 195.08 310.929 235.183 1 2 ? N1 GTP 503 A 1 
HETATM 29 C C2 GTP . . . F 6 193.827 310.442 234.885 1 2 ? C2 GTP 503 A 1 
HETATM 30 N N2 GTP . . . F 6 193.709 309.771 233.775 1 2 ? N2 GTP 503 A 1 
HETATM 31 N N3 GTP . . . F 6 192.774 310.623 235.682 1 2 ? N3 GTP 503 A 1 
HETATM 32 C C4 GTP . . . F 6 193.068 311.349 236.809 1 3.56 ? C4 GTP 503 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           117 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#