data_5OAT # _model_server_result.job_id 51afs_qpfS_H-8M1xcLBHQ _model_server_result.datetime_utc '2024-11-05 01:28:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oat # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":601}' # _entry.id 5OAT # _exptl.entry_id 5OAT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.29 _cell.angle_gamma 90 _cell.entry_id 5OAT _cell.length_a 84.915 _cell.length_b 116.736 _cell.length_c 179.344 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OAT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 57 A ASN 206 1_555 A N SEP 58 A SEP 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale2 A C SEP 58 A SEP 207 1_555 A N MET 59 A MET 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 B C ASN 57 B ASN 206 1_555 B N SEP 58 B SEP 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C SEP 58 B SEP 207 1_555 B N MET 59 B MET 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 C C ASN 57 C ASN 206 1_555 C N SEP 58 C SEP 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 C C SEP 58 C SEP 207 1_555 C N MET 59 C MET 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 D C ASN 57 D ASN 206 1_555 D N SEP 58 D SEP 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale8 D C SEP 58 D SEP 207 1_555 D N MET 59 D MET 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 E C ASN 57 E ASN 206 1_555 E N SEP 58 E SEP 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale10 E C SEP 58 E SEP 207 1_555 E N MET 59 E MET 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 F C ASN 57 F ASN 206 1_555 F N SEP 58 F SEP 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale12 F C SEP 58 F SEP 207 1_555 F N MET 59 F MET 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 C OD2 ASP 80 C ASP 229 1_555 H MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc2 F OD2 ASP 80 F ASP 229 1_555 L MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5OAT _atom_sites.fract_transf_matrix[1][1] 0.011776 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000883 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008566 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 MG A 1 601 4 MG MG . H 2 MG C 1 601 1 MG MG . I 2 MG C 1 602 6 MG MG . J 2 MG E 1 601 3 MG MG . K 2 MG E 1 602 5 MG MG . L 2 MG F 1 601 2 MG MG . M 3 HOH A 1 701 230 HOH HOH . M 3 HOH A 2 702 173 HOH HOH . M 3 HOH A 3 703 64 HOH HOH . M 3 HOH A 4 704 225 HOH HOH . M 3 HOH A 5 705 224 HOH HOH . M 3 HOH A 6 706 98 HOH HOH . N 3 HOH B 1 601 123 HOH HOH . N 3 HOH B 2 602 30 HOH HOH . N 3 HOH B 3 603 50 HOH HOH . N 3 HOH B 4 604 105 HOH HOH . N 3 HOH B 5 605 75 HOH HOH . N 3 HOH B 6 606 229 HOH HOH . N 3 HOH B 7 607 132 HOH HOH . N 3 HOH B 8 608 5 HOH HOH . N 3 HOH B 9 609 66 HOH HOH . O 3 HOH C 1 701 177 HOH HOH . O 3 HOH C 2 702 202 HOH HOH . O 3 HOH C 3 703 222 HOH HOH . P 3 HOH D 1 601 142 HOH HOH . P 3 HOH D 2 602 17 HOH HOH . P 3 HOH D 3 603 53 HOH HOH . P 3 HOH D 4 604 15 HOH HOH . P 3 HOH D 5 605 35 HOH HOH . P 3 HOH D 6 606 44 HOH HOH . Q 3 HOH E 1 701 7 HOH HOH . R 3 HOH F 1 701 16 HOH HOH . R 3 HOH F 2 702 65 HOH HOH . R 3 HOH F 3 703 223 HOH HOH . R 3 HOH F 4 704 23 HOH HOH . R 3 HOH F 5 705 4 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x 79.917 _atom_site.Cartn_y 18.262 _atom_site.Cartn_z 107.294 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 68.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 601 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #