data_5OB6
#
_model_server_result.job_id            E386FqcrDS_dCarkPcQmsQ 
_model_server_result.datetime_utc      '2024-11-25 05:54:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ob6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    5OB6 
#
_exptl.entry_id    5OB6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OB6 
_cell.length_a            79.776 
_cell.length_b            79.776 
_cell.length_c            36.637 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OB6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc1 A NE2 HIS 15 A HIS 15 1_555 F RU 9Q8 . A 9Q8 205 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc2 A OD2 ASP 18 A ASP 18 1_555 G RU RU2 . A RU2 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc3 A OD1 ASN 46 A ASN 46 1_555 H RU RU2 . A RU2 207 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc4 A OD2 ASP 52 A ASP 52 1_555 H RU RU2 . A RU2 207 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc5 A OD2 ASP 52 A ASP 52 1_555 H RU RU2 . A RU2 207 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.98 ? 
metalc ? metalc6 A O SER 60 A SER 60 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc7 A O CYS 64 A CYS 64 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc8 A OG SER 72 A SER 72 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc9 A O ARG 73 A ARG 73 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? 
metalc ? metalc10 A OD2 ASP 119 A ASP 119 1_555 I RU RU1 . A RU1 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
metalc ? metalc11 A NH1 ARG 125 A ARG 125 1_555 I RU RU1 . A RU1 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? 
metalc ? metalc12 A NH2 ARG 125 A ARG 125 1_555 I RU RU1 . A RU1 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? 
metalc ? metalc13 A O LEU 129 A LEU 129 1_555 J RU RU2 . A RU2 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? 
metalc ? metalc14 A OXT LEU 129 A LEU 129 1_555 J RU RU2 . A RU2 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc15 D NA NA . A NA 203 1_555 K O HOH . A HOH 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc16 D NA NA . A NA 203 1_555 K O HOH . A HOH 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc17 H RU RU2 . A RU2 207 1_555 K O HOH . A HOH 349 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.139 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5OB6 
_atom_sites.fract_transf_matrix[1][1]    0.012535 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012535 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.027295 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 201 1 GOL GOL . 
C 3 CL A 1 202 1 CL CL . 
D 4 NA A 1 203 2 NA NA . 
E 3 CL A 1 204 3 CL CL . 
F 5 9Q8 A 1 205 1 9Q8 RU1 . 
G 6 RU2 A 1 206 2 RU2 RU2 . 
H 6 RU2 A 1 207 3 RU2 RU2 . 
I 7 RU1 A 1 208 4 RU1 RU1 . 
J 6 RU2 A 1 209 5 RU2 RUW . 
K 8 HOH A 1 301 133 HOH HOH . 
K 8 HOH A 2 302 103 HOH HOH . 
K 8 HOH A 3 303 82 HOH HOH . 
K 8 HOH A 4 304 75 HOH HOH . 
K 8 HOH A 5 305 57 HOH HOH . 
K 8 HOH A 6 306 86 HOH HOH . 
K 8 HOH A 7 307 30 HOH HOH . 
K 8 HOH A 8 308 107 HOH HOH . 
K 8 HOH A 9 309 222 HOH HOH . 
K 8 HOH A 10 310 232 HOH HOH . 
K 8 HOH A 11 311 76 HOH HOH . 
K 8 HOH A 12 312 71 HOH HOH . 
K 8 HOH A 13 313 13 HOH HOH . 
K 8 HOH A 14 314 88 HOH HOH . 
K 8 HOH A 15 315 48 HOH HOH . 
K 8 HOH A 16 316 131 HOH HOH . 
K 8 HOH A 17 317 84 HOH HOH . 
K 8 HOH A 18 318 16 HOH HOH . 
K 8 HOH A 19 319 53 HOH HOH . 
K 8 HOH A 20 320 226 HOH HOH . 
K 8 HOH A 21 321 74 HOH HOH . 
K 8 HOH A 22 322 83 HOH HOH . 
K 8 HOH A 23 323 19 HOH HOH . 
K 8 HOH A 24 324 31 HOH HOH . 
K 8 HOH A 25 325 1 HOH HOH . 
K 8 HOH A 26 326 3 HOH HOH . 
K 8 HOH A 27 327 148 HOH HOH . 
K 8 HOH A 28 328 79 HOH HOH . 
K 8 HOH A 29 329 49 HOH HOH . 
K 8 HOH A 30 330 169 HOH HOH . 
K 8 HOH A 31 331 50 HOH HOH . 
K 8 HOH A 32 332 32 HOH HOH . 
K 8 HOH A 33 333 80 HOH HOH . 
K 8 HOH A 34 334 223 HOH HOH . 
K 8 HOH A 35 335 65 HOH HOH . 
K 8 HOH A 36 336 22 HOH HOH . 
K 8 HOH A 37 337 63 HOH HOH . 
K 8 HOH A 38 338 155 HOH HOH . 
K 8 HOH A 39 339 58 HOH HOH . 
K 8 HOH A 40 340 21 HOH HOH . 
K 8 HOH A 41 341 70 HOH HOH . 
K 8 HOH A 42 342 18 HOH HOH . 
K 8 HOH A 43 343 184 HOH HOH . 
K 8 HOH A 44 344 98 HOH HOH . 
K 8 HOH A 45 345 178 HOH HOH . 
K 8 HOH A 46 346 7 HOH HOH . 
K 8 HOH A 47 347 174 HOH HOH . 
K 8 HOH A 48 348 102 HOH HOH . 
K 8 HOH A 49 349 229 HOH HOH . 
K 8 HOH A 50 350 106 HOH HOH . 
K 8 HOH A 51 351 44 HOH HOH . 
K 8 HOH A 52 352 230 HOH HOH . 
K 8 HOH A 53 353 66 HOH HOH . 
K 8 HOH A 54 354 56 HOH HOH . 
K 8 HOH A 55 355 89 HOH HOH . 
K 8 HOH A 56 356 146 HOH HOH . 
K 8 HOH A 57 357 15 HOH HOH . 
K 8 HOH A 58 358 11 HOH HOH . 
K 8 HOH A 59 359 115 HOH HOH . 
K 8 HOH A 60 360 145 HOH HOH . 
K 8 HOH A 61 361 111 HOH HOH . 
K 8 HOH A 62 362 110 HOH HOH . 
K 8 HOH A 63 363 116 HOH HOH . 
K 8 HOH A 64 364 99 HOH HOH . 
K 8 HOH A 65 365 12 HOH HOH . 
K 8 HOH A 66 366 136 HOH HOH . 
K 8 HOH A 67 367 221 HOH HOH . 
K 8 HOH A 68 368 137 HOH HOH . 
K 8 HOH A 69 369 46 HOH HOH . 
K 8 HOH A 70 370 100 HOH HOH . 
K 8 HOH A 71 371 55 HOH HOH . 
K 8 HOH A 72 372 227 HOH HOH . 
K 8 HOH A 73 373 9 HOH HOH . 
K 8 HOH A 74 374 61 HOH HOH . 
K 8 HOH A 75 375 165 HOH HOH . 
K 8 HOH A 76 376 8 HOH HOH . 
K 8 HOH A 77 377 20 HOH HOH . 
K 8 HOH A 78 378 14 HOH HOH . 
K 8 HOH A 79 379 42 HOH HOH . 
K 8 HOH A 80 380 38 HOH HOH . 
K 8 HOH A 81 381 225 HOH HOH . 
K 8 HOH A 82 382 17 HOH HOH . 
K 8 HOH A 83 383 73 HOH HOH . 
K 8 HOH A 84 384 37 HOH HOH . 
K 8 HOH A 85 385 183 HOH HOH . 
K 8 HOH A 86 386 26 HOH HOH . 
K 8 HOH A 87 387 109 HOH HOH . 
K 8 HOH A 88 388 218 HOH HOH . 
K 8 HOH A 89 389 231 HOH HOH . 
K 8 HOH A 90 390 198 HOH HOH . 
K 8 HOH A 91 391 81 HOH HOH . 
K 8 HOH A 92 392 2 HOH HOH . 
K 8 HOH A 93 393 68 HOH HOH . 
K 8 HOH A 94 394 147 HOH HOH . 
K 8 HOH A 95 395 220 HOH HOH . 
K 8 HOH A 96 396 157 HOH HOH . 
K 8 HOH A 97 397 69 HOH HOH . 
K 8 HOH A 98 398 94 HOH HOH . 
K 8 HOH A 99 399 128 HOH HOH . 
K 8 HOH A 100 400 117 HOH HOH . 
K 8 HOH A 101 401 97 HOH HOH . 
K 8 HOH A 102 402 130 HOH HOH . 
K 8 HOH A 103 403 91 HOH HOH . 
K 8 HOH A 104 404 41 HOH HOH . 
K 8 HOH A 105 405 34 HOH HOH . 
K 8 HOH A 106 406 190 HOH HOH . 
K 8 HOH A 107 407 33 HOH HOH . 
K 8 HOH A 108 408 10 HOH HOH . 
K 8 HOH A 109 409 52 HOH HOH . 
K 8 HOH A 110 410 105 HOH HOH . 
K 8 HOH A 111 411 54 HOH HOH . 
K 8 HOH A 112 412 139 HOH HOH . 
K 8 HOH A 113 413 47 HOH HOH . 
K 8 HOH A 114 414 202 HOH HOH . 
K 8 HOH A 115 415 203 HOH HOH . 
K 8 HOH A 116 416 96 HOH HOH . 
K 8 HOH A 117 417 112 HOH HOH . 
K 8 HOH A 118 418 134 HOH HOH . 
K 8 HOH A 119 419 124 HOH HOH . 
K 8 HOH A 120 420 90 HOH HOH . 
K 8 HOH A 121 421 85 HOH HOH . 
K 8 HOH A 122 422 39 HOH HOH . 
K 8 HOH A 123 423 113 HOH HOH . 
K 8 HOH A 124 424 211 HOH HOH . 
K 8 HOH A 125 425 72 HOH HOH . 
K 8 HOH A 126 426 135 HOH HOH . 
K 8 HOH A 127 427 62 HOH HOH . 
K 8 HOH A 128 428 228 HOH HOH . 
K 8 HOH A 129 429 152 HOH HOH . 
K 8 HOH A 130 430 185 HOH HOH . 
K 8 HOH A 131 431 195 HOH HOH . 
K 8 HOH A 132 432 173 HOH HOH . 
K 8 HOH A 133 433 188 HOH HOH . 
K 8 HOH A 134 434 92 HOH HOH . 
K 8 HOH A 135 435 45 HOH HOH . 
K 8 HOH A 136 436 216 HOH HOH . 
K 8 HOH A 137 437 125 HOH HOH . 
K 8 HOH A 138 438 176 HOH HOH . 
K 8 HOH A 139 439 156 HOH HOH . 
K 8 HOH A 140 440 51 HOH HOH . 
K 8 HOH A 141 441 171 HOH HOH . 
K 8 HOH A 142 442 64 HOH HOH . 
K 8 HOH A 143 443 212 HOH HOH . 
K 8 HOH A 144 444 172 HOH HOH . 
K 8 HOH A 145 445 93 HOH HOH . 
K 8 HOH A 146 446 197 HOH HOH . 
K 8 HOH A 147 447 163 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -8.54 
_atom_site.Cartn_y               -14.914 
_atom_site.Cartn_z               12.659 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        28.42 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           203 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#