data_5OC0 # _model_server_result.job_id 0NpU6CJO1csL8o1j7F5Nmw _model_server_result.datetime_utc '2024-11-27 18:23:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oc0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5OC0 # _exptl.entry_id 5OC0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OC0 _cell.length_a 68.046 _cell.length_b 91.102 _cell.length_c 97.923 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OC0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 26 A ALA 26 1_555 A N MSE 27 A MSE 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A C MSE 27 A MSE 27 1_555 A N GLU 28 A GLU 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C ASN 42 A ASN 42 1_555 A N MSE 43 A MSE 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale4 A C MSE 43 A MSE 43 1_555 A N ILE 44 A ILE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale5 A C LEU 55 A LEU 55 1_555 A N MSE 56 A MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale6 A C MSE 56 A MSE 56 1_555 A N VAL 57 A VAL 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale7 A C PRO 77 A PRO 77 1_555 A N MSE 78 A MSE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 A C MSE 78 A MSE 78 1_555 A N MSE 79 A MSE 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 A C MSE 79 A MSE 79 1_555 A N THR 80 A THR 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 A C VAL 103 A VAL 103 1_555 A N MSE 104 A MSE 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale11 A C MSE 104 A MSE 104 1_555 A N MSE 105 A MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 A C MSE 105 A MSE 105 1_555 A N TYR 106 A TYR 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale13 A C THR 118 A THR 118 1_555 A N MSE 119 A MSE 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 A C MSE 119 A MSE 119 1_555 A N PRO 120 A PRO 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 A C ARG 169 A ARG 169 1_555 A N MSE 170 A MSE 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale16 A C MSE 170 A MSE 170 1_555 A N MSE 171 A MSE 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale17 A C MSE 171 A MSE 171 1_555 A N PRO 172 A PRO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? metalc ? metalc1 A NE2 HIS 13 A HIS 13 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? metalc ? metalc2 A NE2 HIS 45 A HIS 45 1_555 C FE HEM . A HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc3 A O ARG 63 A ARG 63 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc4 A O ARG 63 A ARG 63 1_555 D MG MG . A MG 203 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc5 A O LEU 64 A LEU 64 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc6 A O LEU 64 A LEU 64 1_555 D MG MG . A MG 203 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? metalc ? metalc7 A O TYR 66 A TYR 66 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc8 A O TYR 66 A TYR 66 1_555 D MG MG . A MG 203 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc9 A NE2 HIS 137 A HIS 137 1_555 C FE HEM . A HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc10 A NE2 HIS 151 A HIS 151 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 234 n n CHA C4D HEM doub 235 n n CHA HHA HEM sing 236 n n CHB C4A HEM sing 237 n n CHB C1B HEM doub 238 n n CHB HHB HEM sing 239 n n CHC C4B HEM sing 240 n n CHC C1C HEM doub 241 n n CHC HHC HEM sing 242 n n CHD C4C HEM doub 243 n n CHD C1D HEM sing 244 n n CHD HHD HEM sing 245 n n C1A C2A HEM doub 246 n y C1A NA HEM sing 247 n y C2A C3A HEM sing 248 n y C2A CAA HEM sing 249 n n C3A C4A HEM doub 250 n y C3A CMA HEM sing 251 n n C4A NA HEM sing 252 n y CMA HMA HEM sing 253 n n CMA HMAA HEM sing 254 n n CMA HMAB HEM sing 255 n n CAA CBA HEM sing 256 n n CAA HAA HEM sing 257 n n CAA HAAA HEM sing 258 n n CBA CGA HEM sing 259 n n CBA HBA HEM sing 260 n n CBA HBAA HEM sing 261 n n CGA O1A HEM doub 262 n n CGA O2A HEM sing 263 n n C1B C2B HEM sing 264 n n C1B NB HEM sing 265 n n C2B C3B HEM doub 266 n n C2B CMB HEM sing 267 n n C3B C4B HEM sing 268 n n C3B CAB HEM sing 269 n n C4B NB HEM doub 270 n n CMB HMB HEM sing 271 n n CMB HMBA HEM sing 272 n n CMB HMBB HEM sing 273 n n CAB CBB HEM doub 274 n n CAB HAB HEM sing 275 n n CBB HBB HEM sing 276 n n CBB HBBA HEM sing 277 n n C1C C2C HEM sing 278 n y C1C NC HEM sing 279 n y C2C C3C HEM doub 280 n y C2C CMC HEM sing 281 n n C3C C4C HEM sing 282 n y C3C CAC HEM sing 283 n n C4C NC HEM sing 284 n y CMC HMC HEM sing 285 n n CMC HMCA HEM sing 286 n n CMC HMCB HEM sing 287 n n CAC CBC HEM doub 288 n n CAC HAC HEM sing 289 n n CBC HBC HEM sing 290 n n CBC HBCA HEM sing 291 n n C1D C2D HEM sing 292 n n C1D ND HEM doub 293 n n C2D C3D HEM doub 294 n n C2D CMD HEM sing 295 n n C3D C4D HEM sing 296 n n C3D CAD HEM sing 297 n n C4D ND HEM sing 298 n n CMD HMD HEM sing 299 n n CMD HMDA HEM sing 300 n n CMD HMDB HEM sing 301 n n CAD CBD HEM sing 302 n n CAD HAD HEM sing 303 n n CAD HADA HEM sing 304 n n CBD CGD HEM sing 305 n n CBD HBD HEM sing 306 n n CBD HBDA HEM sing 307 n n CGD O1D HEM doub 308 n n CGD O2D HEM sing 309 n n O2A H2A HEM sing 310 n n O2D H2D HEM sing 311 n n FE NA HEM sing 312 n n FE NB HEM sing 313 n n FE NC HEM sing 314 n n FE ND HEM sing 315 n n # _atom_sites.entry_id 5OC0 _atom_sites.fract_transf_matrix[1][1] 0.014696 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010212 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 1 HEM HEM . C 2 HEM A 1 202 1 HEM HEM . D 3 MG A 1 203 1 MG MG . E 4 GOL A 1 204 1 GOL GOL . F 5 37X A 1 205 1 37X 37X . G 6 HOH A 1 301 11 HOH HOH . G 6 HOH A 2 302 15 HOH HOH . G 6 HOH A 3 303 8 HOH HOH . G 6 HOH A 4 304 5 HOH HOH . G 6 HOH A 5 305 9 HOH HOH . G 6 HOH A 6 306 6 HOH HOH . G 6 HOH A 7 307 3 HOH HOH . G 6 HOH A 8 308 13 HOH HOH . G 6 HOH A 9 309 22 HOH HOH . G 6 HOH A 10 310 12 HOH HOH . G 6 HOH A 11 311 10 HOH HOH . G 6 HOH A 12 312 1 HOH HOH . G 6 HOH A 13 313 26 HOH HOH . G 6 HOH A 14 314 7 HOH HOH . G 6 HOH A 15 315 20 HOH HOH . G 6 HOH A 16 316 4 HOH HOH . G 6 HOH A 17 317 24 HOH HOH . G 6 HOH A 18 318 2 HOH HOH . G 6 HOH A 19 319 14 HOH HOH . G 6 HOH A 20 320 23 HOH HOH . G 6 HOH A 21 321 17 HOH HOH . G 6 HOH A 22 322 18 HOH HOH . G 6 HOH A 23 323 16 HOH HOH . G 6 HOH A 24 324 19 HOH HOH . G 6 HOH A 25 325 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -0.504 39.971 36.986 1 29.86 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 -1.16 39.971 41.773 1 32.62 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 1.815 43.774 42.119 1 29.86 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 1.502 44.351 37.372 1 32.72 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 -0.878 39.605 38.244 1 33.07 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 -1.767 38.54 38.53 1 33.74 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 -1.952 38.521 39.88 1 33.89 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 -1.206 39.601 40.443 1 34.47 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 -2.805 37.552 40.627 1 33.62 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 -2.353 37.583 37.541 1 32.52 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 -3.662 38.22 37.107 1 32.24 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 -4.317 37.426 35.966 1 35.47 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 -3.693 36.563 35.338 1 34.15 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 -5.485 37.648 35.642 1 36.43 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 -0.398 41.01 42.334 1 34.71 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 -0.229 41.249 43.767 1 32.14 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 0.611 42.345 43.865 1 33.66 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 0.97 42.737 42.447 1 31.91 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 -0.908 40.47 44.889 1 33.63 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 1.174 43.032 45.038 1 38.97 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 1.069 42.574 46.274 1 48.44 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 2.032 44.32 40.891 1 33.55 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 2.72 45.526 40.601 1 31.86 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 2.58 45.69 39.199 1 31.01 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 1.834 44.577 38.688 1 33.46 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 3.443 46.455 41.563 1 32.4 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 3.095 46.726 38.312 1 31.92 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 3.742 47.81 38.651 1 38.8 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 0.934 43.164 36.904 1 32.44 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 0.787 42.92 35.436 1 32.03 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 0.226 41.691 35.328 1 31.93 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 0.064 41.198 36.72 1 31.13 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 1.161 43.877 34.35 1 31.44 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 -0.122 40.929 34.085 1 32.65 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 0.885 39.819 33.82 1 31.04 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 2.317 40.305 33.745 1 35.48 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 2.716 41.095 32.842 1 35.38 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 3.151 39.89 34.604 1 36.74 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 -0.592 40.279 39.434 1 30.42 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 0.357 41.873 41.669 1 30.65 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 1.522 43.756 39.731 1 30.96 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 0.513 42.111 37.595 1 30.86 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 0.456 41.977 39.571 1 32.06 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #