data_5OC0 # _model_server_result.job_id g4oezUYGFJTJCqBdbrv6JQ _model_server_result.datetime_utc '2024-11-27 18:16:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oc0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5OC0 # _exptl.entry_id 5OC0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OC0 _cell.length_a 68.046 _cell.length_b 91.102 _cell.length_c 97.923 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OC0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 26 A ALA 26 1_555 A N MSE 27 A MSE 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A C MSE 27 A MSE 27 1_555 A N GLU 28 A GLU 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C ASN 42 A ASN 42 1_555 A N MSE 43 A MSE 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale4 A C MSE 43 A MSE 43 1_555 A N ILE 44 A ILE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale5 A C LEU 55 A LEU 55 1_555 A N MSE 56 A MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale6 A C MSE 56 A MSE 56 1_555 A N VAL 57 A VAL 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale7 A C PRO 77 A PRO 77 1_555 A N MSE 78 A MSE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 A C MSE 78 A MSE 78 1_555 A N MSE 79 A MSE 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 A C MSE 79 A MSE 79 1_555 A N THR 80 A THR 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 A C VAL 103 A VAL 103 1_555 A N MSE 104 A MSE 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale11 A C MSE 104 A MSE 104 1_555 A N MSE 105 A MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 A C MSE 105 A MSE 105 1_555 A N TYR 106 A TYR 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale13 A C THR 118 A THR 118 1_555 A N MSE 119 A MSE 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 A C MSE 119 A MSE 119 1_555 A N PRO 120 A PRO 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 A C ARG 169 A ARG 169 1_555 A N MSE 170 A MSE 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale16 A C MSE 170 A MSE 170 1_555 A N MSE 171 A MSE 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale17 A C MSE 171 A MSE 171 1_555 A N PRO 172 A PRO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? metalc ? metalc1 A NE2 HIS 13 A HIS 13 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? metalc ? metalc2 A NE2 HIS 45 A HIS 45 1_555 C FE HEM . A HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc3 A O ARG 63 A ARG 63 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc4 A O ARG 63 A ARG 63 1_555 D MG MG . A MG 203 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc5 A O LEU 64 A LEU 64 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc6 A O LEU 64 A LEU 64 1_555 D MG MG . A MG 203 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? metalc ? metalc7 A O TYR 66 A TYR 66 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc8 A O TYR 66 A TYR 66 1_555 D MG MG . A MG 203 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc9 A NE2 HIS 137 A HIS 137 1_555 C FE HEM . A HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc10 A NE2 HIS 151 A HIS 151 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 221 n n C1 C2 GOL sing 222 n n C1 H11 GOL sing 223 n n C1 H12 GOL sing 224 n n O1 HO1 GOL sing 225 n n C2 O2 GOL sing 226 n n C2 C3 GOL sing 227 n n C2 H2 GOL sing 228 n n O2 HO2 GOL sing 229 n n C3 O3 GOL sing 230 n n C3 H31 GOL sing 231 n n C3 H32 GOL sing 232 n n O3 HO3 GOL sing 233 n n # _atom_sites.entry_id 5OC0 _atom_sites.fract_transf_matrix[1][1] 0.014696 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010212 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 1 HEM HEM . C 2 HEM A 1 202 1 HEM HEM . D 3 MG A 1 203 1 MG MG . E 4 GOL A 1 204 1 GOL GOL . F 5 37X A 1 205 1 37X 37X . G 6 HOH A 1 301 11 HOH HOH . G 6 HOH A 2 302 15 HOH HOH . G 6 HOH A 3 303 8 HOH HOH . G 6 HOH A 4 304 5 HOH HOH . G 6 HOH A 5 305 9 HOH HOH . G 6 HOH A 6 306 6 HOH HOH . G 6 HOH A 7 307 3 HOH HOH . G 6 HOH A 8 308 13 HOH HOH . G 6 HOH A 9 309 22 HOH HOH . G 6 HOH A 10 310 12 HOH HOH . G 6 HOH A 11 311 10 HOH HOH . G 6 HOH A 12 312 1 HOH HOH . G 6 HOH A 13 313 26 HOH HOH . G 6 HOH A 14 314 7 HOH HOH . G 6 HOH A 15 315 20 HOH HOH . G 6 HOH A 16 316 4 HOH HOH . G 6 HOH A 17 317 24 HOH HOH . G 6 HOH A 18 318 2 HOH HOH . G 6 HOH A 19 319 14 HOH HOH . G 6 HOH A 20 320 23 HOH HOH . G 6 HOH A 21 321 17 HOH HOH . G 6 HOH A 22 322 18 HOH HOH . G 6 HOH A 23 323 16 HOH HOH . G 6 HOH A 24 324 19 HOH HOH . G 6 HOH A 25 325 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 -7.905 43.891 37.362 1 68.81 ? C1 GOL 204 A 1 HETATM 2 O O1 GOL . . . E 4 -7.846 45.047 38.225 1 79.35 ? O1 GOL 204 A 1 HETATM 3 C C2 GOL . . . E 4 -6.514 43.321 37.032 1 59.29 ? C2 GOL 204 A 1 HETATM 4 O O2 GOL . . . E 4 -5.497 44.103 37.63 1 48.43 ? O2 GOL 204 A 1 HETATM 5 C C3 GOL . . . E 4 -6.451 41.875 37.496 1 54.38 ? C3 GOL 204 A 1 HETATM 6 O O3 GOL . . . E 4 -5.186 41.188 37.437 1 43.95 ? O3 GOL 204 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #