data_5OC7 # _model_server_result.job_id QYY59CVxd2Ban8gJGclVzA _model_server_result.datetime_utc '2024-11-14 10:46:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oc7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":101}' # _entry.id 5OC7 # _exptl.entry_id 5OC7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 62.74 _cell.angle_beta 84.77 _cell.angle_gamma 89.29 _cell.entry_id 5OC7 _cell.length_a 29.683 _cell.length_b 62.606 _cell.length_c 67.378 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OC7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 PISA monomeric 1 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,C,G,H,I,J,N,O 1 1 A,E,F,M 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 3 1 D,K,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5OC7 _atom_sites.fract_transf_matrix[1][1] 0.033689 _atom_sites.fract_transf_matrix[1][2] -0.000417 _atom_sites.fract_transf_matrix[1][3] -0.003253 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015974 _atom_sites.fract_transf_matrix[2][3] -0.00825 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016774 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL D 1 901 4 GOL GOL . F 4 IP2 D 1 902 1 IP2 IP2 . G 3 GOL A 1 901 6 GOL GOL . H 3 GOL A 1 902 7 GOL GOL . I 3 GOL A 1 903 9 GOL GOL . J 3 GOL C 1 101 8 GOL GOL . K 3 GOL B 1 101 2 GOL GOL . L 3 GOL B 1 102 5 GOL GOL . M 5 HOH D 1 1001 167 HOH HOH . M 5 HOH D 2 1002 310 HOH HOH . M 5 HOH D 3 1003 82 HOH HOH . M 5 HOH D 4 1004 78 HOH HOH . M 5 HOH D 5 1005 333 HOH HOH . M 5 HOH D 6 1006 63 HOH HOH . M 5 HOH D 7 1007 112 HOH HOH . M 5 HOH D 8 1008 23 HOH HOH . M 5 HOH D 9 1009 514 HOH HOH . M 5 HOH D 10 1010 336 HOH HOH . M 5 HOH D 11 1011 156 HOH HOH . M 5 HOH D 12 1012 145 HOH HOH . M 5 HOH D 13 1013 132 HOH HOH . M 5 HOH D 14 1014 545 HOH HOH . M 5 HOH D 15 1015 51 HOH HOH . M 5 HOH D 16 1016 48 HOH HOH . M 5 HOH D 17 1017 67 HOH HOH . M 5 HOH D 18 1018 166 HOH HOH . M 5 HOH D 19 1019 31 HOH HOH . M 5 HOH D 20 1020 64 HOH HOH . M 5 HOH D 21 1021 14 HOH HOH . M 5 HOH D 22 1022 259 HOH HOH . M 5 HOH D 23 1023 544 HOH HOH . M 5 HOH D 24 1024 463 HOH HOH . M 5 HOH D 25 1025 99 HOH HOH . M 5 HOH D 26 1026 9 HOH HOH . M 5 HOH D 27 1027 157 HOH HOH . M 5 HOH D 28 1028 36 HOH HOH . M 5 HOH D 29 1029 43 HOH HOH . M 5 HOH D 30 1030 130 HOH HOH . M 5 HOH D 31 1031 102 HOH HOH . M 5 HOH D 32 1032 446 HOH HOH . M 5 HOH D 33 1033 53 HOH HOH . M 5 HOH D 34 1034 83 HOH HOH . M 5 HOH D 35 1035 58 HOH HOH . M 5 HOH D 36 1036 125 HOH HOH . M 5 HOH D 37 1037 12 HOH HOH . M 5 HOH D 38 1038 25 HOH HOH . M 5 HOH D 39 1039 4 HOH HOH . M 5 HOH D 40 1040 191 HOH HOH . M 5 HOH D 41 1041 109 HOH HOH . M 5 HOH D 42 1042 174 HOH HOH . M 5 HOH D 43 1043 564 HOH HOH . M 5 HOH D 44 1044 176 HOH HOH . M 5 HOH D 45 1045 11 HOH HOH . M 5 HOH D 46 1046 547 HOH HOH . M 5 HOH D 47 1047 332 HOH HOH . M 5 HOH D 48 1048 312 HOH HOH . M 5 HOH D 49 1049 212 HOH HOH . M 5 HOH D 50 1050 526 HOH HOH . M 5 HOH D 51 1051 40 HOH HOH . M 5 HOH D 52 1052 171 HOH HOH . M 5 HOH D 53 1053 13 HOH HOH . M 5 HOH D 54 1054 469 HOH HOH . M 5 HOH D 55 1055 330 HOH HOH . M 5 HOH D 56 1056 76 HOH HOH . M 5 HOH D 57 1057 338 HOH HOH . M 5 HOH D 58 1058 286 HOH HOH . M 5 HOH D 59 1059 50 HOH HOH . M 5 HOH D 60 1060 59 HOH HOH . M 5 HOH D 61 1061 241 HOH HOH . M 5 HOH D 62 1062 107 HOH HOH . M 5 HOH D 63 1063 46 HOH HOH . M 5 HOH D 64 1064 92 HOH HOH . M 5 HOH D 65 1065 316 HOH HOH . M 5 HOH D 66 1066 138 HOH HOH . M 5 HOH D 67 1067 398 HOH HOH . M 5 HOH D 68 1068 26 HOH HOH . M 5 HOH D 69 1069 136 HOH HOH . M 5 HOH D 70 1070 80 HOH HOH . M 5 HOH D 71 1071 164 HOH HOH . M 5 HOH D 72 1072 527 HOH HOH . M 5 HOH D 73 1073 200 HOH HOH . M 5 HOH D 74 1074 185 HOH HOH . M 5 HOH D 75 1075 282 HOH HOH . M 5 HOH D 76 1076 177 HOH HOH . M 5 HOH D 77 1077 178 HOH HOH . M 5 HOH D 78 1078 412 HOH HOH . M 5 HOH D 79 1079 250 HOH HOH . M 5 HOH D 80 1080 552 HOH HOH . M 5 HOH D 81 1081 54 HOH HOH . M 5 HOH D 82 1082 563 HOH HOH . M 5 HOH D 83 1083 556 HOH HOH . M 5 HOH D 84 1084 114 HOH HOH . M 5 HOH D 85 1085 303 HOH HOH . M 5 HOH D 86 1086 561 HOH HOH . M 5 HOH D 87 1087 553 HOH HOH . N 5 HOH A 1 1001 428 HOH HOH . N 5 HOH A 2 1002 119 HOH HOH . N 5 HOH A 3 1003 353 HOH HOH . N 5 HOH A 4 1004 180 HOH HOH . N 5 HOH A 5 1005 237 HOH HOH . N 5 HOH A 6 1006 149 HOH HOH . N 5 HOH A 7 1007 96 HOH HOH . N 5 HOH A 8 1008 30 HOH HOH . N 5 HOH A 9 1009 232 HOH HOH . N 5 HOH A 10 1010 47 HOH HOH . N 5 HOH A 11 1011 35 HOH HOH . N 5 HOH A 12 1012 491 HOH HOH . N 5 HOH A 13 1013 20 HOH HOH . N 5 HOH A 14 1014 86 HOH HOH . N 5 HOH A 15 1015 492 HOH HOH . N 5 HOH A 16 1016 235 HOH HOH . N 5 HOH A 17 1017 21 HOH HOH . N 5 HOH A 18 1018 94 HOH HOH . N 5 HOH A 19 1019 98 HOH HOH . N 5 HOH A 20 1020 196 HOH HOH . N 5 HOH A 21 1021 141 HOH HOH . N 5 HOH A 22 1022 480 HOH HOH . N 5 HOH A 23 1023 10 HOH HOH . N 5 HOH A 24 1024 113 HOH HOH . N 5 HOH A 25 1025 258 HOH HOH . N 5 HOH A 26 1026 248 HOH HOH . N 5 HOH A 27 1027 37 HOH HOH . N 5 HOH A 28 1028 351 HOH HOH . N 5 HOH A 29 1029 105 HOH HOH . N 5 HOH A 30 1030 240 HOH HOH . N 5 HOH A 31 1031 34 HOH HOH . N 5 HOH A 32 1032 202 HOH HOH . N 5 HOH A 33 1033 443 HOH HOH . N 5 HOH A 34 1034 124 HOH HOH . N 5 HOH A 35 1035 62 HOH HOH . N 5 HOH A 36 1036 16 HOH HOH . N 5 HOH A 37 1037 70 HOH HOH . N 5 HOH A 38 1038 120 HOH HOH . N 5 HOH A 39 1039 71 HOH HOH . N 5 HOH A 40 1040 93 HOH HOH . N 5 HOH A 41 1041 32 HOH HOH . N 5 HOH A 42 1042 7 HOH HOH . N 5 HOH A 43 1043 210 HOH HOH . N 5 HOH A 44 1044 61 HOH HOH . N 5 HOH A 45 1045 329 HOH HOH . N 5 HOH A 46 1046 263 HOH HOH . N 5 HOH A 47 1047 562 HOH HOH . N 5 HOH A 48 1048 216 HOH HOH . N 5 HOH A 49 1049 429 HOH HOH . N 5 HOH A 50 1050 560 HOH HOH . N 5 HOH A 51 1051 399 HOH HOH . N 5 HOH A 52 1052 199 HOH HOH . O 5 HOH C 1 201 375 HOH HOH . O 5 HOH C 2 202 391 HOH HOH . O 5 HOH C 3 203 27 HOH HOH . O 5 HOH C 4 204 542 HOH HOH . O 5 HOH C 5 205 154 HOH HOH . O 5 HOH C 6 206 172 HOH HOH . O 5 HOH C 7 207 38 HOH HOH . O 5 HOH C 8 208 121 HOH HOH . O 5 HOH C 9 209 45 HOH HOH . O 5 HOH C 10 210 493 HOH HOH . O 5 HOH C 11 211 392 HOH HOH . O 5 HOH C 12 212 3 HOH HOH . O 5 HOH C 13 213 66 HOH HOH . O 5 HOH C 14 214 6 HOH HOH . O 5 HOH C 15 215 24 HOH HOH . O 5 HOH C 16 216 103 HOH HOH . O 5 HOH C 17 217 190 HOH HOH . O 5 HOH C 18 218 75 HOH HOH . O 5 HOH C 19 219 371 HOH HOH . O 5 HOH C 20 220 243 HOH HOH . O 5 HOH C 21 221 256 HOH HOH . O 5 HOH C 22 222 84 HOH HOH . O 5 HOH C 23 223 227 HOH HOH . O 5 HOH C 24 224 5 HOH HOH . O 5 HOH C 25 225 79 HOH HOH . O 5 HOH C 26 226 368 HOH HOH . O 5 HOH C 27 227 207 HOH HOH . O 5 HOH C 28 228 436 HOH HOH . O 5 HOH C 29 229 483 HOH HOH . O 5 HOH C 30 230 77 HOH HOH . O 5 HOH C 31 231 169 HOH HOH . O 5 HOH C 32 232 197 HOH HOH . O 5 HOH C 33 233 213 HOH HOH . O 5 HOH C 34 234 417 HOH HOH . O 5 HOH C 35 235 189 HOH HOH . O 5 HOH C 36 236 139 HOH HOH . O 5 HOH C 37 237 218 HOH HOH . O 5 HOH C 38 238 111 HOH HOH . O 5 HOH C 39 239 223 HOH HOH . O 5 HOH C 40 240 15 HOH HOH . O 5 HOH C 41 241 106 HOH HOH . O 5 HOH C 42 242 56 HOH HOH . O 5 HOH C 43 243 87 HOH HOH . O 5 HOH C 44 244 100 HOH HOH . O 5 HOH C 45 245 142 HOH HOH . O 5 HOH C 46 246 225 HOH HOH . O 5 HOH C 47 247 437 HOH HOH . O 5 HOH C 48 248 22 HOH HOH . O 5 HOH C 49 249 289 HOH HOH . O 5 HOH C 50 250 280 HOH HOH . O 5 HOH C 51 251 234 HOH HOH . O 5 HOH C 52 252 146 HOH HOH . O 5 HOH C 53 253 162 HOH HOH . O 5 HOH C 54 254 373 HOH HOH . O 5 HOH C 55 255 81 HOH HOH . O 5 HOH C 56 256 559 HOH HOH . O 5 HOH C 57 257 60 HOH HOH . O 5 HOH C 58 258 434 HOH HOH . O 5 HOH C 59 259 506 HOH HOH . O 5 HOH C 60 260 486 HOH HOH . O 5 HOH C 61 261 307 HOH HOH . O 5 HOH C 62 262 422 HOH HOH . O 5 HOH C 63 263 211 HOH HOH . O 5 HOH C 64 264 507 HOH HOH . O 5 HOH C 65 265 123 HOH HOH . O 5 HOH C 66 266 558 HOH HOH . O 5 HOH C 67 267 318 HOH HOH . O 5 HOH C 68 268 557 HOH HOH . O 5 HOH C 69 269 370 HOH HOH . O 5 HOH C 70 270 468 HOH HOH . O 5 HOH C 71 271 253 HOH HOH . O 5 HOH C 72 272 88 HOH HOH . O 5 HOH C 73 273 513 HOH HOH . P 5 HOH B 1 201 160 HOH HOH . P 5 HOH B 2 202 29 HOH HOH . P 5 HOH B 3 203 457 HOH HOH . P 5 HOH B 4 204 19 HOH HOH . P 5 HOH B 5 205 215 HOH HOH . P 5 HOH B 6 206 72 HOH HOH . P 5 HOH B 7 207 155 HOH HOH . P 5 HOH B 8 208 1 HOH HOH . P 5 HOH B 9 209 44 HOH HOH . P 5 HOH B 10 210 18 HOH HOH . P 5 HOH B 11 211 144 HOH HOH . P 5 HOH B 12 212 33 HOH HOH . P 5 HOH B 13 213 8 HOH HOH . P 5 HOH B 14 214 182 HOH HOH . P 5 HOH B 15 215 2 HOH HOH . P 5 HOH B 16 216 115 HOH HOH . P 5 HOH B 17 217 69 HOH HOH . P 5 HOH B 18 218 68 HOH HOH . P 5 HOH B 19 219 17 HOH HOH . P 5 HOH B 20 220 95 HOH HOH . P 5 HOH B 21 221 39 HOH HOH . P 5 HOH B 22 222 262 HOH HOH . P 5 HOH B 23 223 574 HOH HOH . P 5 HOH B 24 224 152 HOH HOH . P 5 HOH B 25 225 49 HOH HOH . P 5 HOH B 26 226 305 HOH HOH . P 5 HOH B 27 227 137 HOH HOH . P 5 HOH B 28 228 126 HOH HOH . P 5 HOH B 29 229 220 HOH HOH . P 5 HOH B 30 230 304 HOH HOH . P 5 HOH B 31 231 153 HOH HOH . P 5 HOH B 32 232 65 HOH HOH . P 5 HOH B 33 233 133 HOH HOH . P 5 HOH B 34 234 311 HOH HOH . P 5 HOH B 35 235 306 HOH HOH . P 5 HOH B 36 236 108 HOH HOH . P 5 HOH B 37 237 188 HOH HOH . P 5 HOH B 38 238 519 HOH HOH . P 5 HOH B 39 239 438 HOH HOH . P 5 HOH B 40 240 409 HOH HOH . P 5 HOH B 41 241 532 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 3 18.688 -14.272 61.065 1 45.3 ? C1 GOL 101 B 1 HETATM 2 O O1 GOL . . . K 3 18.731 -13.403 59.961 1 40.88 ? O1 GOL 101 B 1 HETATM 3 C C2 GOL . . . K 3 17.301 -14.325 61.678 1 55.82 ? C2 GOL 101 B 1 HETATM 4 O O2 GOL . . . K 3 16.323 -13.706 60.862 1 39.32 ? O2 GOL 101 B 1 HETATM 5 C C3 GOL . . . K 3 16.971 -15.79 61.833 1 51.54 ? C3 GOL 101 B 1 HETATM 6 O O3 GOL . . . K 3 15.766 -15.967 62.513 1 42.17 ? O3 GOL 101 B 1 HETATM 7 H H11 GOL . . . K 3 19.403 -13.936 61.817 1 54.42 ? H11 GOL 101 B 1 HETATM 8 H H12 GOL . . . K 3 18.983 -15.273 60.749 1 54.42 ? H12 GOL 101 B 1 HETATM 9 H HO1 GOL . . . K 3 19.651 -13.34 59.63 1 49.12 ? HO1 GOL 101 B 1 HETATM 10 H H2 GOL . . . K 3 17.325 -13.857 62.662 1 67.05 ? H2 GOL 101 B 1 HETATM 11 H HO2 GOL . . . K 3 16.307 -14.143 59.984 1 47.25 ? HO2 GOL 101 B 1 HETATM 12 H H31 GOL . . . K 3 17.772 -16.287 62.38 1 61.91 ? H31 GOL 101 B 1 HETATM 13 H H32 GOL . . . K 3 16.902 -16.252 60.848 1 61.91 ? H32 GOL 101 B 1 HETATM 14 H HO3 GOL . . . K 3 15.032 -15.599 61.978 1 50.66 ? HO3 GOL 101 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #