data_5OC9 # _model_server_result.job_id pJBhHyNEjV0HaziplgMYgg _model_server_result.datetime_utc '2024-10-28 02:25:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oc9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":710}' # _entry.id 5OC9 # _exptl.entry_id 5OC9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 328.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (7Z)-hexadec-7-enoate' _entity.pdbx_number_of_molecules 18 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OC9 _cell.length_a 59.15 _cell.length_b 153.59 _cell.length_c 218.78 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OC9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 Z N N ? 3 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 259 A GLU 259 1_555 E CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc2 A OD1 ASN 444 A ASN 444 1_555 C CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc3 A OE1 GLN 445 A GLN 445 1_555 C CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc4 A OE1 GLU 448 A GLU 448 1_555 C CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc5 A OE2 GLU 448 A GLU 448 1_555 D CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc6 A OD1 ASP 497 A ASP 497 1_555 D CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc7 A OE1 GLU 500 A GLU 500 1_555 C CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.192 ? metalc ? metalc8 A OE2 GLU 500 A GLU 500 1_555 C CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc9 A OE1 GLU 500 A GLU 500 1_555 D CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.028 ? metalc ? metalc10 A OE1 GLU 529 A GLU 529 1_555 C CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc11 A OE2 GLU 529 A GLU 529 1_555 C CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc12 A OE2 GLU 529 A GLU 529 1_555 D CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc13 A OD1 ASP 533 A ASP 533 1_555 D CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc14 A OD2 ASP 533 A ASP 533 1_555 D CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc15 A O ALA 610 A ALA 610 1_555 E CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc16 A O ILE 613 A ILE 613 1_555 E CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc17 A OD1 ASP 615 A ASP 615 1_555 E CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc18 B OE1 GLU 259 B GLU 259 1_555 Q CA CA . B CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc19 B OD1 ASN 444 B ASN 444 1_555 O CA CA . B CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc20 B OE1 GLN 445 B GLN 445 1_555 O CA CA . B CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc21 B OE1 GLU 448 B GLU 448 1_555 O CA CA . B CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc22 B OE2 GLU 448 B GLU 448 1_555 P CA CA . B CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc23 B OD1 ASP 497 B ASP 497 1_555 P CA CA . B CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc24 B OE2 GLU 500 B GLU 500 1_555 O CA CA . B CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc25 B OE1 GLU 500 B GLU 500 1_555 P CA CA . B CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.082 ? metalc ? metalc26 B OE1 GLU 529 B GLU 529 1_555 O CA CA . B CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc27 B OE2 GLU 529 B GLU 529 1_555 O CA CA . B CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc28 B OE2 GLU 529 B GLU 529 1_555 P CA CA . B CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc29 B OD1 ASP 533 B ASP 533 1_555 P CA CA . B CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? metalc ? metalc30 B OD2 ASP 533 B ASP 533 1_555 P CA CA . B CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc31 B O ALA 610 B ALA 610 1_555 Q CA CA . B CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc32 B O ILE 613 B ILE 613 1_555 Q CA CA . B CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc33 B OD1 ASP 615 B ASP 615 1_555 Q CA CA . B CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc34 O CA CA . B CA 701 1_555 CA O HOH . B HOH 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc35 Q CA CA . B CA 703 1_555 CA O HOH . B HOH 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? # _chem_comp.formula 'C19 H36 O4' _chem_comp.formula_weight 328.487 _chem_comp.id 79M _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (7Z)-hexadec-7-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[(2R)-2,3-bis(oxidanyl)propyl] (Z)-hexadec-7-enoate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 79M sing 1 n n C1 O19 79M doub 2 n n C1 O20 79M sing 3 n n C2 C3 79M sing 4 n n C3 C4 79M sing 5 n n C4 C5 79M sing 6 n n C5 C6 79M sing 7 n n C6 C7 79M sing 8 n n C7 C8 79M doub 9 z n C8 C9 79M sing 10 n n C9 C10 79M sing 11 n n C10 C11 79M sing 12 n n C11 C12 79M sing 13 n n C12 C13 79M sing 14 n n C13 C14 79M sing 15 n n C14 C15 79M sing 16 n n C15 C19 79M sing 17 n n O20 C21 79M sing 18 n n C21 C22 79M sing 19 n n C22 O23 79M sing 20 n n C22 C24 79M sing 21 n n C24 O25 79M sing 22 n n C2 H21C 79M sing 23 n n C2 H22C 79M sing 24 n n C3 H31C 79M sing 25 n n C3 H32C 79M sing 26 n n C4 H41C 79M sing 27 n n C4 H42C 79M sing 28 n n C5 H51C 79M sing 29 n n C5 H52C 79M sing 30 n n C6 H61C 79M sing 31 n n C6 H62C 79M sing 32 n n C7 H7 79M sing 33 n n C8 H8 79M sing 34 n n C9 H91 79M sing 35 n n C9 H92 79M sing 36 n n C10 H101 79M sing 37 n n C10 H102 79M sing 38 n n C11 H111 79M sing 39 n n C11 H112 79M sing 40 n n C12 H121 79M sing 41 n n C12 H122 79M sing 42 n n C13 H131 79M sing 43 n n C13 H132 79M sing 44 n n C14 H141 79M sing 45 n n C14 H142 79M sing 46 n n C15 H151 79M sing 47 n n C15 H152 79M sing 48 n n C19 H191 79M sing 49 n n C19 H192 79M sing 50 n n C19 H193 79M sing 51 n n C21 H211 79M sing 52 n n C21 H212 79M sing 53 n n C22 H22 79M sing 54 n n O23 H23 79M sing 55 n n C24 H241 79M sing 56 n n C24 H242 79M sing 57 n n O25 H25 79M sing 58 n n # _atom_sites.entry_id 5OC9 _atom_sites.fract_transf_matrix[1][1] 0.016906 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006511 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004571 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 701 800 CA CA . D 2 CA A 1 702 801 CA CA . E 2 CA A 1 703 802 CA CA . F 3 79M A 1 704 850 79M 79M . G 3 79M A 1 705 851 79M 79M . H 3 79M A 1 706 852 79M 79M . I 3 79M A 1 707 853 79M 79M . J 3 79M A 1 708 854 79M 79M . K 3 79M A 1 709 855 79M 79M . L 3 79M A 1 710 856 79M 79M . M 3 79M A 1 711 857 79M 79M . N 3 79M A 1 712 858 79M 79M . O 2 CA B 1 701 800 CA CA . P 2 CA B 1 702 801 CA CA . Q 2 CA B 1 703 802 CA CA . R 2 CA B 1 704 803 CA CA . S 3 79M B 1 705 850 79M 79M . T 3 79M B 1 706 851 79M 79M . U 3 79M B 1 707 852 79M 79M . V 3 79M B 1 708 853 79M 79M . W 3 79M B 1 709 854 79M 79M . X 3 79M B 1 710 855 79M 79M . Y 3 79M B 1 711 856 79M 79M . Z 3 79M B 1 712 857 79M 79M . AA 3 79M B 1 713 858 79M 79M . BA 4 HOH A 1 801 1 HOH HOH . BA 4 HOH A 2 802 37 HOH HOH . BA 4 HOH A 3 803 51 HOH HOH . BA 4 HOH A 4 804 52 HOH HOH . BA 4 HOH A 5 805 33 HOH HOH . BA 4 HOH A 6 806 39 HOH HOH . BA 4 HOH A 7 807 19 HOH HOH . BA 4 HOH A 8 808 56 HOH HOH . BA 4 HOH A 9 809 53 HOH HOH . BA 4 HOH A 10 810 50 HOH HOH . BA 4 HOH A 11 811 49 HOH HOH . BA 4 HOH A 12 812 54 HOH HOH . BA 4 HOH A 13 813 43 HOH HOH . BA 4 HOH A 14 814 28 HOH HOH . BA 4 HOH A 15 815 48 HOH HOH . BA 4 HOH A 16 816 10 HOH HOH . BA 4 HOH A 17 817 57 HOH HOH . BA 4 HOH A 18 818 25 HOH HOH . BA 4 HOH A 19 819 2 HOH HOH . BA 4 HOH A 20 820 47 HOH HOH . BA 4 HOH A 21 821 29 HOH HOH . BA 4 HOH A 22 822 22 HOH HOH . CA 4 HOH B 1 801 13 HOH HOH . CA 4 HOH B 2 802 34 HOH HOH . CA 4 HOH B 3 803 6 HOH HOH . CA 4 HOH B 4 804 55 HOH HOH . CA 4 HOH B 5 805 59 HOH HOH . CA 4 HOH B 6 806 23 HOH HOH . CA 4 HOH B 7 807 11 HOH HOH . CA 4 HOH B 8 808 38 HOH HOH . CA 4 HOH B 9 809 58 HOH HOH . CA 4 HOH B 10 810 35 HOH HOH . CA 4 HOH B 11 811 5 HOH HOH . CA 4 HOH B 12 812 7 HOH HOH . CA 4 HOH B 13 813 3 HOH HOH . CA 4 HOH B 14 814 40 HOH HOH . CA 4 HOH B 15 815 46 HOH HOH . CA 4 HOH B 16 816 18 HOH HOH . CA 4 HOH B 17 817 62 HOH HOH . CA 4 HOH B 18 818 24 HOH HOH . CA 4 HOH B 19 819 63 HOH HOH . CA 4 HOH B 20 820 32 HOH HOH . CA 4 HOH B 21 821 36 HOH HOH . CA 4 HOH B 22 822 60 HOH HOH . CA 4 HOH B 23 823 61 HOH HOH . CA 4 HOH B 24 824 26 HOH HOH . CA 4 HOH B 25 825 8 HOH HOH . CA 4 HOH B 26 826 41 HOH HOH . CA 4 HOH B 27 827 20 HOH HOH . CA 4 HOH B 28 828 42 HOH HOH . CA 4 HOH B 29 829 4 HOH HOH . CA 4 HOH B 30 830 31 HOH HOH . CA 4 HOH B 31 831 9 HOH HOH . CA 4 HOH B 32 832 17 HOH HOH . CA 4 HOH B 33 833 16 HOH HOH . CA 4 HOH B 34 834 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C19 79M . . . L 3 55.802 109.626 54.485 1 78.89 ? C19 79M 710 A 1 HETATM 2 C C8 79M . . . L 3 53.474 102.489 58.204 1 82.94 ? C8 79M 710 A 1 HETATM 3 C C7 79M . . . L 3 52.638 101.696 58.858 1 83.72 ? C7 79M 710 A 1 HETATM 4 C C15 79M . . . L 3 54.974 108.438 54.927 1 79.61 ? C15 79M 710 A 1 HETATM 5 C C9 79M . . . L 3 54.971 102.352 58.093 1 81.53 ? C9 79M 710 A 1 HETATM 6 C C6 79M . . . L 3 52.988 100.473 59.643 1 83.88 ? C6 79M 710 A 1 HETATM 7 C C21 79M . . . L 3 53.729 92.159 57.776 1 88.22 ? C21 79M 710 A 1 HETATM 8 C C14 79M . . . L 3 55.582 107.103 54.527 1 79.97 ? C14 79M 710 A 1 HETATM 9 C C10 79M . . . L 3 55.621 103.45 57.256 1 80.25 ? C10 79M 710 A 1 HETATM 10 C C5 79M . . . L 3 52.548 99.206 58.94 1 84.2 ? C5 79M 710 A 1 HETATM 11 C C13 79M . . . L 3 54.931 105.888 55.166 1 79.7 ? C13 79M 710 A 1 HETATM 12 C C11 79M . . . L 3 55.248 103.418 55.779 1 79.91 ? C11 79M 710 A 1 HETATM 13 C C4 79M . . . L 3 53.071 97.943 59.589 1 85.03 ? C4 79M 710 A 1 HETATM 14 C C12 79M . . . L 3 55.733 104.609 54.972 1 79.72 ? C12 79M 710 A 1 HETATM 15 C C3 79M . . . L 3 52.575 96.677 58.935 1 85.76 ? C3 79M 710 A 1 HETATM 16 C C2 79M . . . L 3 53.707 95.814 58.391 1 87.52 ? C2 79M 710 A 1 HETATM 17 C C24 79M . . . L 3 54.793 89.985 57.144 1 86 ? C24 79M 710 A 1 HETATM 18 C C22 79M . . . L 3 55.018 91.394 57.646 1 87.53 ? C22 79M 710 A 1 HETATM 19 O O19 79M . . . L 3 52.227 94.341 57.21 1 90.4 ? O19 79M 710 A 1 HETATM 20 C C1 79M . . . L 3 53.239 94.497 57.844 1 89.24 ? C1 79M 710 A 1 HETATM 21 O O20 79M . . . L 3 54.09 93.509 58.155 1 88.92 ? O20 79M 710 A 1 HETATM 22 O O23 79M . . . L 3 55.906 92.094 56.768 1 88.04 ? O23 79M 710 A 1 HETATM 23 O O25 79M . . . L 3 56.023 89.308 56.952 1 85.2 ? O25 79M 710 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #