data_5OC9
#
_model_server_result.job_id            1vwBfxlCgAouEvneghepJA 
_model_server_result.datetime_utc      '2024-11-23 10:01:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oc9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":712}' 
#
_entry.id    5OC9 
#
_exptl.entry_id    5OC9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              328.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (7Z)-hexadec-7-enoate' 
_entity.pdbx_number_of_molecules    18 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OC9 
_cell.length_a            59.15 
_cell.length_b            153.59 
_cell.length_c            218.78 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OC9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 259 A GLU 259 1_555 E CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc2 A OD1 ASN 444 A ASN 444 1_555 C CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc3 A OE1 GLN 445 A GLN 445 1_555 C CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? 
metalc ? metalc4 A OE1 GLU 448 A GLU 448 1_555 C CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? 
metalc ? metalc5 A OE2 GLU 448 A GLU 448 1_555 D CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc6 A OD1 ASP 497 A ASP 497 1_555 D CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? 
metalc ? metalc7 A OE1 GLU 500 A GLU 500 1_555 C CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.192 ? 
metalc ? metalc8 A OE2 GLU 500 A GLU 500 1_555 C CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc9 A OE1 GLU 500 A GLU 500 1_555 D CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.028 ? 
metalc ? metalc10 A OE1 GLU 529 A GLU 529 1_555 C CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc11 A OE2 GLU 529 A GLU 529 1_555 C CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? 
metalc ? metalc12 A OE2 GLU 529 A GLU 529 1_555 D CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc13 A OD1 ASP 533 A ASP 533 1_555 D CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? 
metalc ? metalc14 A OD2 ASP 533 A ASP 533 1_555 D CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? 
metalc ? metalc15 A O ALA 610 A ALA 610 1_555 E CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc16 A O ILE 613 A ILE 613 1_555 E CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc17 A OD1 ASP 615 A ASP 615 1_555 E CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc18 B OE1 GLU 259 B GLU 259 1_555 Q CA CA . B CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc19 B OD1 ASN 444 B ASN 444 1_555 O CA CA . B CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
metalc ? metalc20 B OE1 GLN 445 B GLN 445 1_555 O CA CA . B CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc21 B OE1 GLU 448 B GLU 448 1_555 O CA CA . B CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? 
metalc ? metalc22 B OE2 GLU 448 B GLU 448 1_555 P CA CA . B CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc23 B OD1 ASP 497 B ASP 497 1_555 P CA CA . B CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? 
metalc ? metalc24 B OE2 GLU 500 B GLU 500 1_555 O CA CA . B CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? 
metalc ? metalc25 B OE1 GLU 500 B GLU 500 1_555 P CA CA . B CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.082 ? 
metalc ? metalc26 B OE1 GLU 529 B GLU 529 1_555 O CA CA . B CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc27 B OE2 GLU 529 B GLU 529 1_555 O CA CA . B CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc28 B OE2 GLU 529 B GLU 529 1_555 P CA CA . B CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc29 B OD1 ASP 533 B ASP 533 1_555 P CA CA . B CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? 
metalc ? metalc30 B OD2 ASP 533 B ASP 533 1_555 P CA CA . B CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? 
metalc ? metalc31 B O ALA 610 B ALA 610 1_555 Q CA CA . B CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc32 B O ILE 613 B ILE 613 1_555 Q CA CA . B CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc33 B OD1 ASP 615 B ASP 615 1_555 Q CA CA . B CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc34 O CA CA . B CA 701 1_555 CA O HOH . B HOH 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? 
metalc ? metalc35 Q CA CA . B CA 703 1_555 CA O HOH . B HOH 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
#
_chem_comp.formula           'C19 H36 O4' 
_chem_comp.formula_weight    328.487 
_chem_comp.id                79M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (7Z)-hexadec-7-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '[(2R)-2,3-bis(oxidanyl)propyl] (Z)-hexadec-7-enoate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 79M sing 1 n n 
C1 O19 79M doub 2 n n 
C1 O20 79M sing 3 n n 
C2 C3 79M sing 4 n n 
C3 C4 79M sing 5 n n 
C4 C5 79M sing 6 n n 
C5 C6 79M sing 7 n n 
C6 C7 79M sing 8 n n 
C7 C8 79M doub 9 z n 
C8 C9 79M sing 10 n n 
C9 C10 79M sing 11 n n 
C10 C11 79M sing 12 n n 
C11 C12 79M sing 13 n n 
C12 C13 79M sing 14 n n 
C13 C14 79M sing 15 n n 
C14 C15 79M sing 16 n n 
C15 C19 79M sing 17 n n 
O20 C21 79M sing 18 n n 
C21 C22 79M sing 19 n n 
C22 O23 79M sing 20 n n 
C22 C24 79M sing 21 n n 
C24 O25 79M sing 22 n n 
C2 H21C 79M sing 23 n n 
C2 H22C 79M sing 24 n n 
C3 H31C 79M sing 25 n n 
C3 H32C 79M sing 26 n n 
C4 H41C 79M sing 27 n n 
C4 H42C 79M sing 28 n n 
C5 H51C 79M sing 29 n n 
C5 H52C 79M sing 30 n n 
C6 H61C 79M sing 31 n n 
C6 H62C 79M sing 32 n n 
C7 H7 79M sing 33 n n 
C8 H8 79M sing 34 n n 
C9 H91 79M sing 35 n n 
C9 H92 79M sing 36 n n 
C10 H101 79M sing 37 n n 
C10 H102 79M sing 38 n n 
C11 H111 79M sing 39 n n 
C11 H112 79M sing 40 n n 
C12 H121 79M sing 41 n n 
C12 H122 79M sing 42 n n 
C13 H131 79M sing 43 n n 
C13 H132 79M sing 44 n n 
C14 H141 79M sing 45 n n 
C14 H142 79M sing 46 n n 
C15 H151 79M sing 47 n n 
C15 H152 79M sing 48 n n 
C19 H191 79M sing 49 n n 
C19 H192 79M sing 50 n n 
C19 H193 79M sing 51 n n 
C21 H211 79M sing 52 n n 
C21 H212 79M sing 53 n n 
C22 H22 79M sing 54 n n 
O23 H23 79M sing 55 n n 
C24 H241 79M sing 56 n n 
C24 H242 79M sing 57 n n 
O25 H25 79M sing 58 n n 
#
_atom_sites.entry_id                     5OC9 
_atom_sites.fract_transf_matrix[1][1]    0.016906 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006511 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004571 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA A 1 701 800 CA CA . 
D 2 CA A 1 702 801 CA CA . 
E 2 CA A 1 703 802 CA CA . 
F 3 79M A 1 704 850 79M 79M . 
G 3 79M A 1 705 851 79M 79M . 
H 3 79M A 1 706 852 79M 79M . 
I 3 79M A 1 707 853 79M 79M . 
J 3 79M A 1 708 854 79M 79M . 
K 3 79M A 1 709 855 79M 79M . 
L 3 79M A 1 710 856 79M 79M . 
M 3 79M A 1 711 857 79M 79M . 
N 3 79M A 1 712 858 79M 79M . 
O 2 CA B 1 701 800 CA CA . 
P 2 CA B 1 702 801 CA CA . 
Q 2 CA B 1 703 802 CA CA . 
R 2 CA B 1 704 803 CA CA . 
S 3 79M B 1 705 850 79M 79M . 
T 3 79M B 1 706 851 79M 79M . 
U 3 79M B 1 707 852 79M 79M . 
V 3 79M B 1 708 853 79M 79M . 
W 3 79M B 1 709 854 79M 79M . 
X 3 79M B 1 710 855 79M 79M . 
Y 3 79M B 1 711 856 79M 79M . 
Z 3 79M B 1 712 857 79M 79M . 
AA 3 79M B 1 713 858 79M 79M . 
BA 4 HOH A 1 801 1 HOH HOH . 
BA 4 HOH A 2 802 37 HOH HOH . 
BA 4 HOH A 3 803 51 HOH HOH . 
BA 4 HOH A 4 804 52 HOH HOH . 
BA 4 HOH A 5 805 33 HOH HOH . 
BA 4 HOH A 6 806 39 HOH HOH . 
BA 4 HOH A 7 807 19 HOH HOH . 
BA 4 HOH A 8 808 56 HOH HOH . 
BA 4 HOH A 9 809 53 HOH HOH . 
BA 4 HOH A 10 810 50 HOH HOH . 
BA 4 HOH A 11 811 49 HOH HOH . 
BA 4 HOH A 12 812 54 HOH HOH . 
BA 4 HOH A 13 813 43 HOH HOH . 
BA 4 HOH A 14 814 28 HOH HOH . 
BA 4 HOH A 15 815 48 HOH HOH . 
BA 4 HOH A 16 816 10 HOH HOH . 
BA 4 HOH A 17 817 57 HOH HOH . 
BA 4 HOH A 18 818 25 HOH HOH . 
BA 4 HOH A 19 819 2 HOH HOH . 
BA 4 HOH A 20 820 47 HOH HOH . 
BA 4 HOH A 21 821 29 HOH HOH . 
BA 4 HOH A 22 822 22 HOH HOH . 
CA 4 HOH B 1 801 13 HOH HOH . 
CA 4 HOH B 2 802 34 HOH HOH . 
CA 4 HOH B 3 803 6 HOH HOH . 
CA 4 HOH B 4 804 55 HOH HOH . 
CA 4 HOH B 5 805 59 HOH HOH . 
CA 4 HOH B 6 806 23 HOH HOH . 
CA 4 HOH B 7 807 11 HOH HOH . 
CA 4 HOH B 8 808 38 HOH HOH . 
CA 4 HOH B 9 809 58 HOH HOH . 
CA 4 HOH B 10 810 35 HOH HOH . 
CA 4 HOH B 11 811 5 HOH HOH . 
CA 4 HOH B 12 812 7 HOH HOH . 
CA 4 HOH B 13 813 3 HOH HOH . 
CA 4 HOH B 14 814 40 HOH HOH . 
CA 4 HOH B 15 815 46 HOH HOH . 
CA 4 HOH B 16 816 18 HOH HOH . 
CA 4 HOH B 17 817 62 HOH HOH . 
CA 4 HOH B 18 818 24 HOH HOH . 
CA 4 HOH B 19 819 63 HOH HOH . 
CA 4 HOH B 20 820 32 HOH HOH . 
CA 4 HOH B 21 821 36 HOH HOH . 
CA 4 HOH B 22 822 60 HOH HOH . 
CA 4 HOH B 23 823 61 HOH HOH . 
CA 4 HOH B 24 824 26 HOH HOH . 
CA 4 HOH B 25 825 8 HOH HOH . 
CA 4 HOH B 26 826 41 HOH HOH . 
CA 4 HOH B 27 827 20 HOH HOH . 
CA 4 HOH B 28 828 42 HOH HOH . 
CA 4 HOH B 29 829 4 HOH HOH . 
CA 4 HOH B 30 830 31 HOH HOH . 
CA 4 HOH B 31 831 9 HOH HOH . 
CA 4 HOH B 32 832 17 HOH HOH . 
CA 4 HOH B 33 833 16 HOH HOH . 
CA 4 HOH B 34 834 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C19 79M . . . N 3 52.864 99.564 44.579 1 46.15 ? C19 79M 712 A 1 
HETATM 2 C C8 79M . . . N 3 56.726 92.266 40.406 1 49.61 ? C8 79M 712 A 1 
HETATM 3 C C7 79M . . . N 3 56.16 91.551 39.452 1 49.08 ? C7 79M 712 A 1 
HETATM 4 C C15 79M . . . N 3 52.927 98.268 43.823 1 46.15 ? C15 79M 712 A 1 
HETATM 5 C C9 79M . . . N 3 56.134 93.465 41.085 1 49.74 ? C9 79M 712 A 1 
HETATM 6 C C14 79M . . . N 3 54.203 97.495 44.095 1 46.91 ? C14 79M 712 A 1 
HETATM 7 C C10 79M . . . N 3 57.122 94.204 41.999 1 49.04 ? C10 79M 712 A 1 
HETATM 8 C C13 79M . . . N 3 54.245 96.134 43.422 1 47.96 ? C13 79M 712 A 1 
HETATM 9 C C11 79M . . . N 3 56.591 95.508 42.588 1 48.6 ? C11 79M 712 A 1 
HETATM 10 C C12 79M . . . N 3 55.522 95.344 43.664 1 48.39 ? C12 79M 712 A 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           358 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           10 
#