data_5OCC # _model_server_result.job_id VUofZ_1lBcytLvOye1sFmw _model_server_result.datetime_utc '2024-11-14 22:31:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5occ # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 5OCC # _exptl.entry_id 5OCC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OCC _cell.length_a 70.23 _cell.length_b 75.02 _cell.length_c 134.95 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OCC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 B 1 NAG A 302 NAG 4 n D NAG 2 B 2 NAG A 303 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 71 1_555 A SG CYS 71 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf2 A SG CYS 110 A CYS 152 1_555 A SG CYS 154 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? disulf ? disulf4 B SG CYS 148 H CYS 148 1_555 B SG CYS 204 H CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? disulf ? disulf5 C SG CYS 22 L CYS 22 1_555 C SG CYS 90 L CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? disulf ? disulf6 C SG CYS 139 L CYS 139 1_555 C SG CYS 198 L CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? covale ? covale1 A ND2 ASN 64 A ASN 106 1_555 E C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 A ND2 ASN 145 A ASN 187 1_555 D C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 D O4 NAG . B NAG 1 1_555 D C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5OCC _atom_sites.fract_transf_matrix[1][1] 0.014239 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01333 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 301 301 NAG NAG . F 6 GOL A 1 304 1 GOL GOL . G 6 GOL A 1 305 3 GOL GOL . H 7 PO4 L 1 301 1 PO4 PO4 . I 8 HOH A 1 401 2 HOH HOH . I 8 HOH A 2 402 383 HOH HOH . I 8 HOH A 3 403 342 HOH HOH . I 8 HOH A 4 404 470 HOH HOH . I 8 HOH A 5 405 111 HOH HOH . I 8 HOH A 6 406 339 HOH HOH . I 8 HOH A 7 407 392 HOH HOH . I 8 HOH A 8 408 428 HOH HOH . I 8 HOH A 9 409 345 HOH HOH . I 8 HOH A 10 410 153 HOH HOH . I 8 HOH A 11 411 113 HOH HOH . I 8 HOH A 12 412 10 HOH HOH . I 8 HOH A 13 413 322 HOH HOH . I 8 HOH A 14 414 189 HOH HOH . I 8 HOH A 15 415 20 HOH HOH . I 8 HOH A 16 416 474 HOH HOH . I 8 HOH A 17 417 439 HOH HOH . I 8 HOH A 18 418 72 HOH HOH . I 8 HOH A 19 419 341 HOH HOH . I 8 HOH A 20 420 499 HOH HOH . I 8 HOH A 21 421 335 HOH HOH . I 8 HOH A 22 422 27 HOH HOH . I 8 HOH A 23 423 367 HOH HOH . I 8 HOH A 24 424 372 HOH HOH . J 8 HOH H 1 301 174 HOH HOH . J 8 HOH H 2 302 435 HOH HOH . J 8 HOH H 3 303 483 HOH HOH . J 8 HOH H 4 304 13 HOH HOH . J 8 HOH H 5 305 160 HOH HOH . J 8 HOH H 6 306 408 HOH HOH . J 8 HOH H 7 307 491 HOH HOH . J 8 HOH H 8 308 77 HOH HOH . J 8 HOH H 9 309 385 HOH HOH . J 8 HOH H 10 310 323 HOH HOH . J 8 HOH H 11 311 21 HOH HOH . J 8 HOH H 12 312 156 HOH HOH . J 8 HOH H 13 313 52 HOH HOH . J 8 HOH H 14 314 371 HOH HOH . J 8 HOH H 15 315 324 HOH HOH . J 8 HOH H 16 316 34 HOH HOH . J 8 HOH H 17 317 418 HOH HOH . J 8 HOH H 18 318 464 HOH HOH . J 8 HOH H 19 319 347 HOH HOH . J 8 HOH H 20 320 205 HOH HOH . J 8 HOH H 21 321 365 HOH HOH . J 8 HOH H 22 322 348 HOH HOH . J 8 HOH H 23 323 331 HOH HOH . J 8 HOH H 24 324 425 HOH HOH . J 8 HOH H 25 325 202 HOH HOH . J 8 HOH H 26 326 333 HOH HOH . J 8 HOH H 27 327 64 HOH HOH . J 8 HOH H 28 328 154 HOH HOH . J 8 HOH H 29 329 56 HOH HOH . J 8 HOH H 30 330 437 HOH HOH . J 8 HOH H 31 331 105 HOH HOH . J 8 HOH H 32 332 362 HOH HOH . J 8 HOH H 33 333 346 HOH HOH . J 8 HOH H 34 334 51 HOH HOH . J 8 HOH H 35 335 373 HOH HOH . J 8 HOH H 36 336 158 HOH HOH . J 8 HOH H 37 337 452 HOH HOH . J 8 HOH H 38 338 17 HOH HOH . J 8 HOH H 39 339 48 HOH HOH . J 8 HOH H 40 340 450 HOH HOH . J 8 HOH H 41 341 350 HOH HOH . J 8 HOH H 42 342 396 HOH HOH . J 8 HOH H 43 343 421 HOH HOH . J 8 HOH H 44 344 366 HOH HOH . J 8 HOH H 45 345 9 HOH HOH . J 8 HOH H 46 346 391 HOH HOH . J 8 HOH H 47 347 357 HOH HOH . J 8 HOH H 48 348 177 HOH HOH . J 8 HOH H 49 349 429 HOH HOH . J 8 HOH H 50 350 93 HOH HOH . K 8 HOH L 1 401 395 HOH HOH . K 8 HOH L 2 402 404 HOH HOH . K 8 HOH L 3 403 78 HOH HOH . K 8 HOH L 4 404 120 HOH HOH . K 8 HOH L 5 405 12 HOH HOH . K 8 HOH L 6 406 338 HOH HOH . K 8 HOH L 7 407 497 HOH HOH . K 8 HOH L 8 408 360 HOH HOH . K 8 HOH L 9 409 417 HOH HOH . K 8 HOH L 10 410 378 HOH HOH . K 8 HOH L 11 411 495 HOH HOH . K 8 HOH L 12 412 155 HOH HOH . K 8 HOH L 13 413 432 HOH HOH . K 8 HOH L 14 414 150 HOH HOH . K 8 HOH L 15 415 337 HOH HOH . K 8 HOH L 16 416 414 HOH HOH . K 8 HOH L 17 417 8 HOH HOH . K 8 HOH L 18 418 327 HOH HOH . K 8 HOH L 19 419 380 HOH HOH . K 8 HOH L 20 420 325 HOH HOH . K 8 HOH L 21 421 438 HOH HOH . K 8 HOH L 22 422 45 HOH HOH . K 8 HOH L 23 423 53 HOH HOH . K 8 HOH L 24 424 173 HOH HOH . K 8 HOH L 25 425 492 HOH HOH . K 8 HOH L 26 426 40 HOH HOH . K 8 HOH L 27 427 332 HOH HOH . K 8 HOH L 28 428 138 HOH HOH . K 8 HOH L 29 429 22 HOH HOH . K 8 HOH L 30 430 433 HOH HOH . K 8 HOH L 31 431 355 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 6 -3.084 38.843 -53.527 1 60.09 ? C1 GOL 304 A 1 HETATM 2 O O1 GOL . . . F 6 -1.743 38.383 -53.363 1 65.12 ? O1 GOL 304 A 1 HETATM 3 C C2 GOL . . . F 6 -3.849 38.826 -52.217 1 59.93 ? C2 GOL 304 A 1 HETATM 4 O O2 GOL . . . F 6 -5.225 39.078 -52.527 1 68.51 ? O2 GOL 304 A 1 HETATM 5 C C3 GOL . . . F 6 -3.307 39.879 -51.266 1 58.29 ? C3 GOL 304 A 1 HETATM 6 O O3 GOL . . . F 6 -1.959 39.528 -50.924 1 59.34 ? O3 GOL 304 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #