data_5OCG
#
_model_server_result.job_id            qQH8XfC9G-Jx_qk3mNjHsA 
_model_server_result.datetime_utc      '2024-11-28 09:14:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ocg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    5OCG 
#
_exptl.entry_id    5OCG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5OCG 
_cell.length_a            78.085 
_cell.length_b            78.085 
_cell.length_c            77.65 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OCG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 11 A GLY 10 1_555 F MG MG . A MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
metalc ? metalc2 A OG SER 18 A SER 17 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc3 A OG1 THR 36 A THR 35 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc4 A O ALA 60 A ALA 59 1_555 F MG MG . A MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? 
metalc ? metalc5 A O GLY 61 A GLY 60 1_555 F MG MG . A MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc6 A OH TYR 97 A TYR 96 1_555 F MG MG . A MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc7 B MG MG . A MG 201 1_555 C O2G GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
metalc ? metalc8 B MG MG . A MG 201 1_555 C O1B GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc9 B MG MG . A MG 201 1_555 H O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc10 B MG MG . A MG 201 1_555 H O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc11 F MG MG . A MG 205 1_555 H O HOH . A HOH 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc12 F MG MG . A MG 205 1_555 H O HOH . A HOH 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 153 n n 
PG O2G GNP sing 154 n n 
PG O3G GNP sing 155 n n 
PG N3B GNP sing 156 n n 
O2G HOG2 GNP sing 157 n n 
O3G HOG3 GNP sing 158 n n 
N3B PB GNP sing 159 n n 
N3B HNB3 GNP sing 160 n n 
PB O1B GNP doub 161 n n 
PB O2B GNP sing 162 n n 
PB O3A GNP sing 163 n n 
O2B HOB2 GNP sing 164 n n 
O3A PA GNP sing 165 n n 
PA O1A GNP doub 166 n n 
PA O2A GNP sing 167 n n 
PA O5' GNP sing 168 n n 
O2A HOA2 GNP sing 169 n n 
O5' C5' GNP sing 170 n n 
C5' C4' GNP sing 171 n n 
C5' "H5'2" GNP sing 172 n n 
C5' "H5'1" GNP sing 173 n n 
C4' O4' GNP sing 174 n n 
C4' C3' GNP sing 175 n n 
C4' H4' GNP sing 176 n n 
O4' C1' GNP sing 177 n n 
C3' O3' GNP sing 178 n n 
C3' C2' GNP sing 179 n n 
C3' H3' GNP sing 180 n n 
O3' HO3' GNP sing 181 n n 
C2' O2' GNP sing 182 n n 
C2' C1' GNP sing 183 n n 
C2' H2' GNP sing 184 n n 
O2' HO2' GNP sing 185 n n 
C1' N9 GNP sing 186 n n 
C1' H1' GNP sing 187 n n 
N9 C8 GNP sing 188 n y 
N9 C4 GNP sing 189 n y 
C8 N7 GNP doub 190 n y 
C8 H8 GNP sing 191 n n 
N7 C5 GNP sing 192 n y 
C5 C6 GNP sing 193 n y 
C5 C4 GNP doub 194 n y 
C6 O6 GNP doub 195 n n 
C6 N1 GNP sing 196 n y 
N1 C2 GNP sing 197 n y 
N1 HN1 GNP sing 198 n n 
C2 N2 GNP sing 199 n n 
C2 N3 GNP doub 200 n y 
N2 HN21 GNP sing 201 n n 
N2 HN22 GNP sing 202 n n 
N3 C4 GNP sing 203 n y 
#
_atom_sites.entry_id                     5OCG 
_atom_sites.fract_transf_matrix[1][1]    0.012807 
_atom_sites.fract_transf_matrix[1][2]    0.007394 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014788 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012878 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 201 202 MG MG . 
C 3 GNP A 1 202 201 GNP GNP . 
D 4 9R5 A 1 203 203 9R5 299 . 
E 5 GOL A 1 204 205 GOL GOL . 
F 2 MG A 1 205 206 MG MG . 
G 6 PEG A 1 206 207 PEG PEG . 
H 7 HOH A 1 301 70 HOH HOH . 
H 7 HOH A 2 302 73 HOH HOH . 
H 7 HOH A 3 303 110 HOH HOH . 
H 7 HOH A 4 304 57 HOH HOH . 
H 7 HOH A 5 305 64 HOH HOH . 
H 7 HOH A 6 306 97 HOH HOH . 
H 7 HOH A 7 307 39 HOH HOH . 
H 7 HOH A 8 308 42 HOH HOH . 
H 7 HOH A 9 309 14 HOH HOH . 
H 7 HOH A 10 310 29 HOH HOH . 
H 7 HOH A 11 311 20 HOH HOH . 
H 7 HOH A 12 312 58 HOH HOH . 
H 7 HOH A 13 313 21 HOH HOH . 
H 7 HOH A 14 314 19 HOH HOH . 
H 7 HOH A 15 315 48 HOH HOH . 
H 7 HOH A 16 316 112 HOH HOH . 
H 7 HOH A 17 317 109 HOH HOH . 
H 7 HOH A 18 318 7 HOH HOH . 
H 7 HOH A 19 319 4 HOH HOH . 
H 7 HOH A 20 320 105 HOH HOH . 
H 7 HOH A 21 321 54 HOH HOH . 
H 7 HOH A 22 322 27 HOH HOH . 
H 7 HOH A 23 323 32 HOH HOH . 
H 7 HOH A 24 324 38 HOH HOH . 
H 7 HOH A 25 325 90 HOH HOH . 
H 7 HOH A 26 326 10 HOH HOH . 
H 7 HOH A 27 327 8 HOH HOH . 
H 7 HOH A 28 328 71 HOH HOH . 
H 7 HOH A 29 329 24 HOH HOH . 
H 7 HOH A 30 330 100 HOH HOH . 
H 7 HOH A 31 331 6 HOH HOH . 
H 7 HOH A 32 332 46 HOH HOH . 
H 7 HOH A 33 333 9 HOH HOH . 
H 7 HOH A 34 334 11 HOH HOH . 
H 7 HOH A 35 335 31 HOH HOH . 
H 7 HOH A 36 336 104 HOH HOH . 
H 7 HOH A 37 337 1 HOH HOH . 
H 7 HOH A 38 338 65 HOH HOH . 
H 7 HOH A 39 339 96 HOH HOH . 
H 7 HOH A 40 340 43 HOH HOH . 
H 7 HOH A 41 341 56 HOH HOH . 
H 7 HOH A 42 342 35 HOH HOH . 
H 7 HOH A 43 343 99 HOH HOH . 
H 7 HOH A 44 344 44 HOH HOH . 
H 7 HOH A 45 345 17 HOH HOH . 
H 7 HOH A 46 346 59 HOH HOH . 
H 7 HOH A 47 347 34 HOH HOH . 
H 7 HOH A 48 348 69 HOH HOH . 
H 7 HOH A 49 349 85 HOH HOH . 
H 7 HOH A 50 350 13 HOH HOH . 
H 7 HOH A 51 351 23 HOH HOH . 
H 7 HOH A 52 352 91 HOH HOH . 
H 7 HOH A 53 353 67 HOH HOH . 
H 7 HOH A 54 354 30 HOH HOH . 
H 7 HOH A 55 355 111 HOH HOH . 
H 7 HOH A 56 356 62 HOH HOH . 
H 7 HOH A 57 357 37 HOH HOH . 
H 7 HOH A 58 358 50 HOH HOH . 
H 7 HOH A 59 359 18 HOH HOH . 
H 7 HOH A 60 360 33 HOH HOH . 
H 7 HOH A 61 361 84 HOH HOH . 
H 7 HOH A 62 362 103 HOH HOH . 
H 7 HOH A 63 363 86 HOH HOH . 
H 7 HOH A 64 364 113 HOH HOH . 
H 7 HOH A 65 365 47 HOH HOH . 
H 7 HOH A 66 366 92 HOH HOH . 
H 7 HOH A 67 367 82 HOH HOH . 
H 7 HOH A 68 368 72 HOH HOH . 
H 7 HOH A 69 369 68 HOH HOH . 
H 7 HOH A 70 370 55 HOH HOH . 
H 7 HOH A 71 371 15 HOH HOH . 
H 7 HOH A 72 372 5 HOH HOH . 
H 7 HOH A 73 373 26 HOH HOH . 
H 7 HOH A 74 374 61 HOH HOH . 
H 7 HOH A 75 375 28 HOH HOH . 
H 7 HOH A 76 376 108 HOH HOH . 
H 7 HOH A 77 377 3 HOH HOH . 
H 7 HOH A 78 378 102 HOH HOH . 
H 7 HOH A 79 379 89 HOH HOH . 
H 7 HOH A 80 380 12 HOH HOH . 
H 7 HOH A 81 381 25 HOH HOH . 
H 7 HOH A 82 382 36 HOH HOH . 
H 7 HOH A 83 383 107 HOH HOH . 
H 7 HOH A 84 384 53 HOH HOH . 
H 7 HOH A 85 385 88 HOH HOH . 
H 7 HOH A 86 386 87 HOH HOH . 
H 7 HOH A 87 387 106 HOH HOH . 
H 7 HOH A 88 388 94 HOH HOH . 
H 7 HOH A 89 389 63 HOH HOH . 
H 7 HOH A 90 390 98 HOH HOH . 
H 7 HOH A 91 391 78 HOH HOH . 
H 7 HOH A 92 392 79 HOH HOH . 
H 7 HOH A 93 393 74 HOH HOH . 
H 7 HOH A 94 394 51 HOH HOH . 
H 7 HOH A 95 395 93 HOH HOH . 
H 7 HOH A 96 396 41 HOH HOH . 
H 7 HOH A 97 397 95 HOH HOH . 
H 7 HOH A 98 398 76 HOH HOH . 
H 7 HOH A 99 399 60 HOH HOH . 
H 7 HOH A 100 400 52 HOH HOH . 
H 7 HOH A 101 401 75 HOH HOH . 
H 7 HOH A 102 402 66 HOH HOH . 
H 7 HOH A 103 403 77 HOH HOH . 
H 7 HOH A 104 404 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . C 3 -7.788 -12.407 17.807 1 15.11 ? PG GNP 202 A 1 
HETATM 2 O O1G GNP . . . C 3 -6.675 -12.271 16.728 1 19.24 ? O1G GNP 202 A 1 
HETATM 3 O O2G GNP . . . C 3 -8.878 -13.25 17.317 1 16.79 ? O2G GNP 202 A 1 
HETATM 4 O O3G GNP . . . C 3 -8.136 -11.076 18.362 1 17.13 ? O3G GNP 202 A 1 
HETATM 5 N N3B GNP . . . C 3 -7.013 -13.261 19.003 1 14.53 ? N3B GNP 202 A 1 
HETATM 6 P PB GNP . . . C 3 -7.903 -13.947 20.329 1 14.56 ? PB GNP 202 A 1 
HETATM 7 O O1B GNP . . . C 3 -8.988 -14.856 19.829 1 12.74 ? O1B GNP 202 A 1 
HETATM 8 O O2B GNP . . . C 3 -8.367 -12.854 21.353 1 12.97 ? O2B GNP 202 A 1 
HETATM 9 O O3A GNP . . . C 3 -6.824 -14.768 21.099 1 12.82 ? O3A GNP 202 A 1 
HETATM 10 P PA GNP . . . C 3 -6.55 -16.376 20.936 1 14.44 ? PA GNP 202 A 1 
HETATM 11 O O1A GNP . . . C 3 -6.242 -16.672 19.435 1 16.62 ? O1A GNP 202 A 1 
HETATM 12 O O2A GNP . . . C 3 -7.682 -17.124 21.574 1 15.06 ? O2A GNP 202 A 1 
HETATM 13 O O5' GNP . . . C 3 -5.3 -16.573 21.8 1 14.11 ? O5' GNP 202 A 1 
HETATM 14 C C5' GNP . . . C 3 -4.072 -15.825 21.559 1 15.12 ? C5' GNP 202 A 1 
HETATM 15 C C4' GNP . . . C 3 -2.864 -16.503 22.143 1 15.12 ? C4' GNP 202 A 1 
HETATM 16 O O4' GNP . . . C 3 -3.017 -16.508 23.629 1 15.23 ? O4' GNP 202 A 1 
HETATM 17 C C3' GNP . . . C 3 -2.75 -17.973 21.799 1 16.35 ? C3' GNP 202 A 1 
HETATM 18 O O3' GNP . . . C 3 -1.364 -18.394 21.767 1 18.35 ? O3' GNP 202 A 1 
HETATM 19 C C2' GNP . . . C 3 -3.455 -18.696 22.985 1 15.45 ? C2' GNP 202 A 1 
HETATM 20 O O2' GNP . . . C 3 -3.092 -20.062 23.137 1 19.13 ? O2' GNP 202 A 1 
HETATM 21 C C1' GNP . . . C 3 -3.113 -17.831 24.117 1 15.61 ? C1' GNP 202 A 1 
HETATM 22 N N9 GNP . . . C 3 -4.131 -17.85 25.212 1 13.59 ? N9 GNP 202 A 1 
HETATM 23 C C8 GNP . . . C 3 -5.461 -17.609 25 1 13.44 ? C8 GNP 202 A 1 
HETATM 24 N N7 GNP . . . C 3 -6.079 -17.749 26.207 1 11.68 ? N7 GNP 202 A 1 
HETATM 25 C C5 GNP . . . C 3 -5.116 -18.019 27.137 1 11.78 ? C5 GNP 202 A 1 
HETATM 26 C C6 GNP . . . C 3 -5.048 -18.236 28.542 1 13.4 ? C6 GNP 202 A 1 
HETATM 27 O O6 GNP . . . C 3 -6.08 -18.171 29.24 1 13.03 ? O6 GNP 202 A 1 
HETATM 28 N N1 GNP . . . C 3 -3.868 -18.471 29.114 1 13.79 ? N1 GNP 202 A 1 
HETATM 29 C C2 GNP . . . C 3 -2.679 -18.532 28.416 1 14.23 ? C2 GNP 202 A 1 
HETATM 30 N N2 GNP . . . C 3 -1.549 -18.768 29.1 1 16.58 ? N2 GNP 202 A 1 
HETATM 31 N N3 GNP . . . C 3 -2.643 -18.323 27.101 1 14.33 ? N3 GNP 202 A 1 
HETATM 32 C C4 GNP . . . C 3 -3.808 -18.09 26.467 1 12.89 ? C4 GNP 202 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#