data_5OCH # _model_server_result.job_id FhAlAGaP-MN2Q8c-XDakHA _model_server_result.datetime_utc '2025-03-06 09:20:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5och # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1002}' # _entry.id 5OCH # _exptl.entry_id 5OCH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.5 _cell.angle_gamma 90 _cell.entry_id 5OCH _cell.length_a 181.08 _cell.length_b 98.5 _cell.length_c 214.87 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OCH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K,L,M,N 1 1 C,D,O,P,Q,R,S 2 1 E,F,T,U,V,W,X,Y 3 1 G,H,Z,AA,BA,CA,DA,EA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 M N N ? 7 P N N ? 7 R N N ? 7 U N N ? 7 X N N ? 7 AA N N ? 7 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 373 A PRO 482 1_555 A N YCM 374 A YCM 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale2 A C YCM 374 A YCM 483 1_555 A N ARG 375 A ARG 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale3 B C GLY 351 B GLY 460 1_555 B N YCM 352 B YCM 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale4 B C YCM 352 B YCM 461 1_555 B N CYS 353 B CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale5 B C PRO 373 B PRO 482 1_555 B N YCM 374 B YCM 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale6 B C YCM 374 B YCM 483 1_555 B N ARG 375 B ARG 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale7 C C PRO 373 C PRO 482 1_555 C N YCM 374 C YCM 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale8 C C YCM 374 C YCM 483 1_555 C N ARG 375 C ARG 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale9 D C PRO 373 D PRO 482 1_555 D N YCM 374 D YCM 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale10 D C YCM 374 D YCM 483 1_555 D N ARG 375 D ARG 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale11 E C ARG 256 E ARG 365 1_555 E N YCM 257 E YCM 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale12 E C YCM 257 E YCM 366 1_555 E N ARG 258 E ARG 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale13 E C PRO 373 E PRO 482 1_555 E N YCM 374 E YCM 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale14 E C YCM 374 E YCM 483 1_555 E N ARG 375 E ARG 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale15 F C VAL 368 F VAL 477 1_555 F N YCM 369 F YCM 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 F C YCM 369 F YCM 478 1_555 F N PHE 370 F PHE 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 F C PRO 373 F PRO 482 1_555 F N YCM 374 F YCM 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale18 F C YCM 374 F YCM 483 1_555 F N ARG 375 F ARG 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale19 G C VAL 368 G VAL 477 1_555 G N YCM 369 G YCM 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale20 G C YCM 369 G YCM 478 1_555 G N PHE 370 G PHE 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale21 G C PRO 373 G PRO 482 1_555 G N YCM 374 G YCM 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale22 G C YCM 374 G YCM 483 1_555 G N ARG 375 G ARG 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? metalc ? metalc1 A OG1 THR 405 A THR 514 1_555 J MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc2 I O3B ADP . A ADP 1001 1_555 J MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc3 B OG1 THR 405 B THR 514 1_555 M MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc4 L O3B ADP . B ADP 1001 1_555 M MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc5 C OG1 THR 405 C THR 514 1_555 P MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc6 O O3B ADP . C ADP 1001 1_555 P MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc7 D OG1 THR 405 D THR 514 1_555 R MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc8 Q O3B ADP . D ADP 1001 1_555 R MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc9 E OG1 THR 405 E THR 514 1_555 U MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc10 T O1B ADP . E ADP 1001 1_555 U MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc11 F OG1 THR 405 F THR 514 1_555 X MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc12 W O1B ADP . F ADP 1001 1_555 X MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc13 G OG1 THR 405 G THR 514 1_555 AA MG MG . G MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc14 Z O3B ADP . G ADP 1001 1_555 AA MG MG . G MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc15 H OG1 THR 405 H THR 514 1_555 DA MG MG . H MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc16 CA O3B ADP . H ADP 1001 1_555 DA MG MG . H MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5OCH _atom_sites.fract_transf_matrix[1][1] 0.005522 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000048 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004654 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 6 ADP A 1 1001 1001 ADP ADP . J 7 MG A 1 1002 1002 MG MG . K 8 Y01 A 1 1003 1003 Y01 Y01 . L 6 ADP B 1 1001 1001 ADP ADP . M 7 MG B 1 1002 1002 MG MG . N 8 Y01 B 1 1003 1003 Y01 Y01 . O 6 ADP C 1 1001 1001 ADP ADP . P 7 MG C 1 1002 1002 MG MG . Q 6 ADP D 1 1001 1001 ADP ADP . R 7 MG D 1 1002 1002 MG MG . S 8 Y01 D 1 1003 1003 Y01 Y01 . T 6 ADP E 1 1001 1001 ADP ADP . U 7 MG E 1 1002 1002 MG MG . V 8 Y01 E 1 1003 1003 Y01 Y01 . W 6 ADP F 1 1001 1001 ADP ADP . X 7 MG F 1 1002 1002 MG MG . Y 8 Y01 F 1 1003 1003 Y01 Y01 . Z 6 ADP G 1 1001 1001 ADP ADP . AA 7 MG G 1 1002 1002 MG MG . BA 8 Y01 G 1 1003 1003 Y01 Y01 . CA 6 ADP H 1 1001 1001 ADP ADP . DA 7 MG H 1 1002 1002 MG MG . EA 8 Y01 H 1 1003 1003 Y01 Y01 . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 7 _atom_site.Cartn_x 178.036 _atom_site.Cartn_y 15.563 _atom_site.Cartn_z 437.931 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.96 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #