data_5OCH # _model_server_result.job_id G9TX_pF3WlYCl0xzsaA9-Q _model_server_result.datetime_utc '2025-03-06 08:59:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5och # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":1003}' # _entry.id 5OCH # _exptl.entry_id 5OCH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.726 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.5 _cell.angle_gamma 90 _cell.entry_id 5OCH _cell.length_a 181.08 _cell.length_b 98.5 _cell.length_c 214.87 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OCH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K,L,M,N 1 1 C,D,O,P,Q,R,S 2 1 E,F,T,U,V,W,X,Y 3 1 G,H,Z,AA,BA,CA,DA,EA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 K N N ? 8 N N N ? 8 S N N ? 8 V N N ? 8 Y N N ? 8 BA N N ? 8 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 373 A PRO 482 1_555 A N YCM 374 A YCM 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale2 A C YCM 374 A YCM 483 1_555 A N ARG 375 A ARG 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale3 B C GLY 351 B GLY 460 1_555 B N YCM 352 B YCM 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale4 B C YCM 352 B YCM 461 1_555 B N CYS 353 B CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale5 B C PRO 373 B PRO 482 1_555 B N YCM 374 B YCM 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale6 B C YCM 374 B YCM 483 1_555 B N ARG 375 B ARG 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale7 C C PRO 373 C PRO 482 1_555 C N YCM 374 C YCM 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale8 C C YCM 374 C YCM 483 1_555 C N ARG 375 C ARG 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale9 D C PRO 373 D PRO 482 1_555 D N YCM 374 D YCM 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale10 D C YCM 374 D YCM 483 1_555 D N ARG 375 D ARG 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale11 E C ARG 256 E ARG 365 1_555 E N YCM 257 E YCM 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale12 E C YCM 257 E YCM 366 1_555 E N ARG 258 E ARG 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale13 E C PRO 373 E PRO 482 1_555 E N YCM 374 E YCM 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale14 E C YCM 374 E YCM 483 1_555 E N ARG 375 E ARG 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale15 F C VAL 368 F VAL 477 1_555 F N YCM 369 F YCM 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 F C YCM 369 F YCM 478 1_555 F N PHE 370 F PHE 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 F C PRO 373 F PRO 482 1_555 F N YCM 374 F YCM 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale18 F C YCM 374 F YCM 483 1_555 F N ARG 375 F ARG 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale19 G C VAL 368 G VAL 477 1_555 G N YCM 369 G YCM 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale20 G C YCM 369 G YCM 478 1_555 G N PHE 370 G PHE 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale21 G C PRO 373 G PRO 482 1_555 G N YCM 374 G YCM 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale22 G C YCM 374 G YCM 483 1_555 G N ARG 375 G ARG 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? metalc ? metalc1 A OG1 THR 405 A THR 514 1_555 J MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc2 I O3B ADP . A ADP 1001 1_555 J MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc3 B OG1 THR 405 B THR 514 1_555 M MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc4 L O3B ADP . B ADP 1001 1_555 M MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc5 C OG1 THR 405 C THR 514 1_555 P MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc6 O O3B ADP . C ADP 1001 1_555 P MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc7 D OG1 THR 405 D THR 514 1_555 R MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc8 Q O3B ADP . D ADP 1001 1_555 R MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc9 E OG1 THR 405 E THR 514 1_555 U MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc10 T O1B ADP . E ADP 1001 1_555 U MG MG . E MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc11 F OG1 THR 405 F THR 514 1_555 X MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc12 W O1B ADP . F ADP 1001 1_555 X MG MG . F MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc13 G OG1 THR 405 G THR 514 1_555 AA MG MG . G MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc14 Z O3B ADP . G ADP 1001 1_555 AA MG MG . G MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc15 H OG1 THR 405 H THR 514 1_555 DA MG MG . H MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc16 CA O3B ADP . H ADP 1001 1_555 DA MG MG . H MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 418 n n CBA CAB Y01 sing 419 n n CBA CAN Y01 sing 420 n n CAN CAJ Y01 sing 421 n n CAJ CAO Y01 sing 422 n n CAO CBB Y01 sing 423 n n CBB CAC Y01 sing 424 n n CBB CBE Y01 sing 425 n n CBE CAP Y01 sing 426 n n CBE CBI Y01 sing 427 n n CAP CAQ Y01 sing 428 n n CAQ CBG Y01 sing 429 n n CBG CBI Y01 sing 430 n n CBG CBD Y01 sing 431 n n CBI CAE Y01 sing 432 n n CBI CAU Y01 sing 433 n n CAU CAS Y01 sing 434 n n CAS CBF Y01 sing 435 n n CBF CBD Y01 sing 436 n n CBF CBH Y01 sing 437 n n CBD CAK Y01 sing 438 n n CAK CAI Y01 sing 439 n n CAI CAZ Y01 doub 440 n n CAZ CAV Y01 sing 441 n n CAZ CBH Y01 sing 442 n n CAV CBC Y01 sing 443 n n CBH CAD Y01 sing 444 n n CBH CAT Y01 sing 445 n n CAT CAR Y01 sing 446 n n CAR CBC Y01 sing 447 n n CBC OAW Y01 sing 448 n n OAW CAY Y01 sing 449 n n CAY OAG Y01 doub 450 n n CAY CAM Y01 sing 451 n n CAM CAL Y01 sing 452 n n CAL CAX Y01 sing 453 n n CAX OAH Y01 sing 454 n n CAX OAF Y01 doub 455 n n CAA HAA1 Y01 sing 456 n n CAA HAA2 Y01 sing 457 n n CAA HAA3 Y01 sing 458 n n CBA HBA Y01 sing 459 n n CAB HAB1 Y01 sing 460 n n CAB HAB2 Y01 sing 461 n n CAB HAB3 Y01 sing 462 n n CAN HAN1 Y01 sing 463 n n CAN HAN2 Y01 sing 464 n n CAJ HAJ1 Y01 sing 465 n n CAJ HAJ2 Y01 sing 466 n n CAO HAO1 Y01 sing 467 n n CAO HAO2 Y01 sing 468 n n CBB HBB Y01 sing 469 n n CAC HAC1 Y01 sing 470 n n CAC HAC2 Y01 sing 471 n n CAC HAC3 Y01 sing 472 n n CBE HBE Y01 sing 473 n n CAP HAP1 Y01 sing 474 n n CAP HAP2 Y01 sing 475 n n CAQ HAQ1 Y01 sing 476 n n CAQ HAQ2 Y01 sing 477 n n CBG HBG Y01 sing 478 n n CBD HBD Y01 sing 479 n n CAE HAE1 Y01 sing 480 n n CAE HAE2 Y01 sing 481 n n CAE HAE3 Y01 sing 482 n n CAU HAU1 Y01 sing 483 n n CAU HAU2 Y01 sing 484 n n CAS HAS1 Y01 sing 485 n n CAS HAS2 Y01 sing 486 n n CBF HBF Y01 sing 487 n n CAK HAK1 Y01 sing 488 n n CAK HAK2 Y01 sing 489 n n CAI HAI Y01 sing 490 n n CAV HAV1 Y01 sing 491 n n CAV HAV2 Y01 sing 492 n n CBC HBC Y01 sing 493 n n CAD HAD1 Y01 sing 494 n n CAD HAD2 Y01 sing 495 n n CAD HAD3 Y01 sing 496 n n CAT HAT1 Y01 sing 497 n n CAT HAT2 Y01 sing 498 n n CAR HAR1 Y01 sing 499 n n CAR HAR2 Y01 sing 500 n n CAM HAM1 Y01 sing 501 n n CAM HAM2 Y01 sing 502 n n CAL HAL1 Y01 sing 503 n n CAL HAL2 Y01 sing 504 n n OAH HAH Y01 sing 505 n n # _atom_sites.entry_id 5OCH _atom_sites.fract_transf_matrix[1][1] 0.005522 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000048 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004654 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 6 ADP A 1 1001 1001 ADP ADP . J 7 MG A 1 1002 1002 MG MG . K 8 Y01 A 1 1003 1003 Y01 Y01 . L 6 ADP B 1 1001 1001 ADP ADP . M 7 MG B 1 1002 1002 MG MG . N 8 Y01 B 1 1003 1003 Y01 Y01 . O 6 ADP C 1 1001 1001 ADP ADP . P 7 MG C 1 1002 1002 MG MG . Q 6 ADP D 1 1001 1001 ADP ADP . R 7 MG D 1 1002 1002 MG MG . S 8 Y01 D 1 1003 1003 Y01 Y01 . T 6 ADP E 1 1001 1001 ADP ADP . U 7 MG E 1 1002 1002 MG MG . V 8 Y01 E 1 1003 1003 Y01 Y01 . W 6 ADP F 1 1001 1001 ADP ADP . X 7 MG F 1 1002 1002 MG MG . Y 8 Y01 F 1 1003 1003 Y01 Y01 . Z 6 ADP G 1 1001 1001 ADP ADP . AA 7 MG G 1 1002 1002 MG MG . BA 8 Y01 G 1 1003 1003 Y01 Y01 . CA 6 ADP H 1 1001 1001 ADP ADP . DA 7 MG H 1 1002 1002 MG MG . EA 8 Y01 H 1 1003 1003 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBB Y01 . . . EA 8 231.925 46.55 563.181 1 98.37 ? CBB Y01 1003 H 1 HETATM 2 C CBE Y01 . . . EA 8 231.924 47.019 564.65 1 99.03 ? CBE Y01 1003 H 1 HETATM 3 C CAP Y01 . . . EA 8 232.205 45.863 565.635 1 99.19 ? CAP Y01 1003 H 1 HETATM 4 C CAQ Y01 . . . EA 8 232.818 46.509 566.895 1 98.33 ? CAQ Y01 1003 H 1 HETATM 5 C CBG Y01 . . . EA 8 232.692 48.022 566.642 1 98.08 ? CBG Y01 1003 H 1 HETATM 6 C CBI Y01 . . . EA 8 232.879 48.152 565.111 1 98.67 ? CBI Y01 1003 H 1 HETATM 7 C CAE Y01 . . . EA 8 234.335 47.901 564.656 1 99.51 ? CAE Y01 1003 H 1 HETATM 8 C CAU Y01 . . . EA 8 232.449 49.587 564.752 1 97.72 ? CAU Y01 1003 H 1 HETATM 9 C CAS Y01 . . . EA 8 233.224 50.658 565.528 1 96.78 ? CAS Y01 1003 H 1 HETATM 10 C CBF Y01 . . . EA 8 233.203 50.466 567.057 1 98 ? CBF Y01 1003 H 1 HETATM 11 C CBD Y01 . . . EA 8 233.521 49.012 567.481 1 98.02 ? CBD Y01 1003 H 1 HETATM 12 C CAK Y01 . . . EA 8 233.23 48.841 568.971 1 98.73 ? CAK Y01 1003 H 1 HETATM 13 C CAI Y01 . . . EA 8 233.762 49.975 569.792 1 99.53 ? CAI Y01 1003 H 1 HETATM 14 C CAZ Y01 . . . EA 8 234.151 51.153 569.307 1 100.88 ? CAZ Y01 1003 H 1 HETATM 15 C CAV Y01 . . . EA 8 234.695 52.218 570.237 1 102.25 ? CAV Y01 1003 H 1 HETATM 16 C CBH Y01 . . . EA 8 234.091 51.507 567.814 1 100.4 ? CBH Y01 1003 H 1 HETATM 17 C CAD Y01 . . . EA 8 235.535 51.529 567.258 1 100.46 ? CAD Y01 1003 H 1 HETATM 18 C CAT Y01 . . . EA 8 233.453 52.907 567.666 1 101.59 ? CAT Y01 1003 H 1 HETATM 19 C CAR Y01 . . . EA 8 234.084 53.979 568.563 1 102.49 ? CAR Y01 1003 H 1 HETATM 20 C CBC Y01 . . . EA 8 234.042 53.574 570.022 1 103.58 ? CBC Y01 1003 H 1 HETATM 21 O OAW Y01 . . . EA 8 234.861 54.537 570.762 1 105.77 ? OAW Y01 1003 H 1 HETATM 22 C CAY Y01 . . . EA 8 234.61 54.779 572.064 1 107.2 ? CAY Y01 1003 H 1 HETATM 23 O OAG Y01 . . . EA 8 233.559 54.549 572.605 1 107.19 ? OAG Y01 1003 H 1 HETATM 24 C CAM Y01 . . . EA 8 235.834 55.312 572.746 1 108.71 ? CAM Y01 1003 H 1 HETATM 25 C CAL Y01 . . . EA 8 235.635 56.635 573.457 1 110.13 ? CAL Y01 1003 H 1 HETATM 26 C CAX Y01 . . . EA 8 236.906 57.194 574.026 1 111.39 ? CAX Y01 1003 H 1 HETATM 27 O OAH Y01 . . . EA 8 236.906 57.269 575.335 1 110.83 ? OAH Y01 1003 H 1 HETATM 28 O OAF Y01 . . . EA 8 237.841 57.552 573.333 1 112.63 ? OAF Y01 1003 H 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 269 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 28 #