data_5OD1
#
_model_server_result.job_id            rYdEu_Ape1uf6OJ-97h_RA 
_model_server_result.datetime_utc      '2024-11-12 23:17:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5od1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":103}' 
#
_entry.id    5OD1 
#
_exptl.entry_id    5OD1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OD1 
_cell.length_a            32.349 
_cell.length_b            46.877 
_cell.length_c            112.621 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OD1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 37 A HIS 35 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc2 A NE2 HIS 63 A HIS 61 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc3 A NE2 HIS 67 A HIS 65 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc4 B ZN ZN . A ZN 101 1_555 C O1 9RQ . A 9RQ 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 163 n n 
C1 C2 GOL sing 164 n n 
C1 H11 GOL sing 165 n n 
C1 H12 GOL sing 166 n n 
O1 HO1 GOL sing 167 n n 
C2 O2 GOL sing 168 n n 
C2 C3 GOL sing 169 n n 
C2 H2 GOL sing 170 n n 
O2 HO2 GOL sing 171 n n 
C3 O3 GOL sing 172 n n 
C3 H31 GOL sing 173 n n 
C3 H32 GOL sing 174 n n 
O3 HO3 GOL sing 175 n n 
#
_atom_sites.entry_id                     5OD1 
_atom_sites.fract_transf_matrix[1][1]    0.030913 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021332 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008879 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 101 1 ZN ZN . 
C 3 9RQ A 1 102 1 9RQ DRG . 
D 4 GOL A 1 103 1 GOL GOL . 
E 5 HOH A 1 201 82 HOH HOH . 
E 5 HOH A 2 202 49 HOH HOH . 
E 5 HOH A 3 203 46 HOH HOH . 
E 5 HOH A 4 204 88 HOH HOH . 
E 5 HOH A 5 205 89 HOH HOH . 
E 5 HOH A 6 206 12 HOH HOH . 
E 5 HOH A 7 207 137 HOH HOH . 
E 5 HOH A 8 208 72 HOH HOH . 
E 5 HOH A 9 209 20 HOH HOH . 
E 5 HOH A 10 210 7 HOH HOH . 
E 5 HOH A 11 211 21 HOH HOH . 
E 5 HOH A 12 212 28 HOH HOH . 
E 5 HOH A 13 213 59 HOH HOH . 
E 5 HOH A 14 214 113 HOH HOH . 
E 5 HOH A 15 215 85 HOH HOH . 
E 5 HOH A 16 216 17 HOH HOH . 
E 5 HOH A 17 217 65 HOH HOH . 
E 5 HOH A 18 218 16 HOH HOH . 
E 5 HOH A 19 219 66 HOH HOH . 
E 5 HOH A 20 220 1 HOH HOH . 
E 5 HOH A 21 221 102 HOH HOH . 
E 5 HOH A 22 222 112 HOH HOH . 
E 5 HOH A 23 223 73 HOH HOH . 
E 5 HOH A 24 224 64 HOH HOH . 
E 5 HOH A 25 225 51 HOH HOH . 
E 5 HOH A 26 226 53 HOH HOH . 
E 5 HOH A 27 227 109 HOH HOH . 
E 5 HOH A 28 228 25 HOH HOH . 
E 5 HOH A 29 229 117 HOH HOH . 
E 5 HOH A 30 230 55 HOH HOH . 
E 5 HOH A 31 231 83 HOH HOH . 
E 5 HOH A 32 232 2 HOH HOH . 
E 5 HOH A 33 233 33 HOH HOH . 
E 5 HOH A 34 234 60 HOH HOH . 
E 5 HOH A 35 235 61 HOH HOH . 
E 5 HOH A 36 236 8 HOH HOH . 
E 5 HOH A 37 237 6 HOH HOH . 
E 5 HOH A 38 238 32 HOH HOH . 
E 5 HOH A 39 239 4 HOH HOH . 
E 5 HOH A 40 240 68 HOH HOH . 
E 5 HOH A 41 241 105 HOH HOH . 
E 5 HOH A 42 242 30 HOH HOH . 
E 5 HOH A 43 243 50 HOH HOH . 
E 5 HOH A 44 244 19 HOH HOH . 
E 5 HOH A 45 245 22 HOH HOH . 
E 5 HOH A 46 246 54 HOH HOH . 
E 5 HOH A 47 247 77 HOH HOH . 
E 5 HOH A 48 248 11 HOH HOH . 
E 5 HOH A 49 249 3 HOH HOH . 
E 5 HOH A 50 250 62 HOH HOH . 
E 5 HOH A 51 251 93 HOH HOH . 
E 5 HOH A 52 252 31 HOH HOH . 
E 5 HOH A 53 253 110 HOH HOH . 
E 5 HOH A 54 254 56 HOH HOH . 
E 5 HOH A 55 255 103 HOH HOH . 
E 5 HOH A 56 256 63 HOH HOH . 
E 5 HOH A 57 257 91 HOH HOH . 
E 5 HOH A 58 258 37 HOH HOH . 
E 5 HOH A 59 259 124 HOH HOH . 
E 5 HOH A 60 260 90 HOH HOH . 
E 5 HOH A 61 261 35 HOH HOH . 
E 5 HOH A 62 262 86 HOH HOH . 
E 5 HOH A 63 263 57 HOH HOH . 
E 5 HOH A 64 264 14 HOH HOH . 
E 5 HOH A 65 265 42 HOH HOH . 
E 5 HOH A 66 266 108 HOH HOH . 
E 5 HOH A 67 267 10 HOH HOH . 
E 5 HOH A 68 268 52 HOH HOH . 
E 5 HOH A 69 269 87 HOH HOH . 
E 5 HOH A 70 270 15 HOH HOH . 
E 5 HOH A 71 271 18 HOH HOH . 
E 5 HOH A 72 272 74 HOH HOH . 
E 5 HOH A 73 273 39 HOH HOH . 
E 5 HOH A 74 274 106 HOH HOH . 
E 5 HOH A 75 275 139 HOH HOH . 
E 5 HOH A 76 276 131 HOH HOH . 
E 5 HOH A 77 277 123 HOH HOH . 
E 5 HOH A 78 278 76 HOH HOH . 
E 5 HOH A 79 279 23 HOH HOH . 
E 5 HOH A 80 280 107 HOH HOH . 
E 5 HOH A 81 281 119 HOH HOH . 
E 5 HOH A 82 282 75 HOH HOH . 
E 5 HOH A 83 283 136 HOH HOH . 
E 5 HOH A 84 284 29 HOH HOH . 
E 5 HOH A 85 285 47 HOH HOH . 
E 5 HOH A 86 286 26 HOH HOH . 
E 5 HOH A 87 287 38 HOH HOH . 
E 5 HOH A 88 288 58 HOH HOH . 
E 5 HOH A 89 289 13 HOH HOH . 
E 5 HOH A 90 290 45 HOH HOH . 
E 5 HOH A 91 291 70 HOH HOH . 
E 5 HOH A 92 292 114 HOH HOH . 
E 5 HOH A 93 293 67 HOH HOH . 
E 5 HOH A 94 294 34 HOH HOH . 
E 5 HOH A 95 295 78 HOH HOH . 
E 5 HOH A 96 296 132 HOH HOH . 
E 5 HOH A 97 297 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 17.649 13.334 21.302 0.5 30.19 ? C1 GOL 103 A 1 
HETATM 2 O O1 GOL . . . D 4 18.051 14.614 21.848 0.5 36.68 ? O1 GOL 103 A 1 
HETATM 3 C C2 GOL . . . D 4 17.126 13.553 19.889 0.5 27.2 ? C2 GOL 103 A 1 
HETATM 4 O O2 GOL . . . D 4 18.007 14.397 19.149 0.5 29.1 ? O2 GOL 103 A 1 
HETATM 5 C C3 GOL . . . D 4 17.061 12.315 19.025 0.5 26.85 ? C3 GOL 103 A 1 
HETATM 6 O O3 GOL . . . D 4 18.169 12.368 18.067 0.5 32.43 ? O3 GOL 103 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#