data_5OD5
#
_model_server_result.job_id            he_-qmt3HdRPK5vGzCFaxA 
_model_server_result.datetime_utc      '2024-11-15 17:43:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5od5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":406}' 
#
_entry.id    5OD5 
#
_exptl.entry_id    5OD5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              327.443 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(1,2,3,4,5-Eta)-1,2,3,4,5-Pentamethylcyclopentadienyl]iridium(III)' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         87.38 
_cell.angle_beta          76.9 
_cell.angle_gamma         79.27 
_cell.entry_id            5OD5 
_cell.length_a            56.692 
_cell.length_b            62.759 
_cell.length_c            68.195 
_cell.Z_PDB               3 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OD5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,W 1 1 
B,J,K,L,M,N,O,X 2 1 
C,P,Q,R,S,T,U,V,Y 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 H N N 
? 6 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 F C 95B . A 95B 403 1_555 G N1 9RT . A 9RT 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? 
covale ? covale2 G C11 9RT . A 9RT 404 1_555 H C23 RIR . A RIR 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.626 ? 
covale ? covale3 S C 95B . C 95B 404 1_555 T N1 9RT . C 9RT 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.294 ? 
metalc ? metalc1 A NE2 HIS 205 A HIS 227 1_555 H IR1 RIR . A RIR 405 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc2 A OH TYR 266 A TYR 288 1_555 D FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc3 D FE FE . A FE 401 1_555 F OAG 95B . A 95B 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc4 D FE FE . A FE 401 1_555 F OAF 95B . A 95B 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc5 D FE FE . A FE 401 1_555 F OAE 95B . A 95B 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc6 D FE FE . A FE 401 1_555 F OAH 95B . A 95B 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc7 G N2 9RT . A 9RT 404 1_555 H IR1 RIR . A RIR 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? 
metalc ? metalc8 G N3 9RT . A 9RT 404 1_555 H IR1 RIR . A RIR 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? 
metalc ? metalc9 B OG1 THR 204 B THR 226 1_555 L IR IR . B IR 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
metalc ? metalc10 C ND1 HIS 205 C HIS 227 1_555 R IR IR . C IR 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc11 C NE2 HIS 205 C HIS 227 1_555 U IR1 RIR . C RIR 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc12 C OH TYR 266 C TYR 288 1_555 P FE FE . C FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc13 P FE FE . C FE 401 1_555 S OAE 95B . C 95B 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
metalc ? metalc14 P FE FE . C FE 401 1_555 S OAH 95B . C 95B 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? 
metalc ? metalc15 P FE FE . C FE 401 1_555 S OAF 95B . C 95B 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? 
metalc ? metalc16 P FE FE . C FE 401 1_555 S OAG 95B . C 95B 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc17 P FE FE . C FE 401 1_555 Y O HOH . C HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc18 Q IR IR . C IR 402 1_555 T N2 9RT . C 9RT 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc19 T N2 9RT . C 9RT 405 1_555 U IR1 RIR . C RIR 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc20 T N3 9RT . C 9RT 405 1_555 U IR1 RIR . C RIR 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
#
_chem_comp.formula           'C10 H15 Ir' 
_chem_comp.formula_weight    327.443 
_chem_comp.id                RIR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(1,2,3,4,5-Eta)-1,2,3,4,5-Pentamethylcyclopentadienyl]iridium(III)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
IR1 C17 RIR sing 417 n n 
IR1 C18 RIR sing 418 n n 
IR1 C19 RIR sing 419 n n 
IR1 C20 RIR sing 420 n n 
IR1 C21 RIR sing 421 n n 
C17 C18 RIR doub 422 n n 
C17 C21 RIR sing 423 n n 
C17 C22 RIR sing 424 n n 
C18 C19 RIR sing 425 n n 
C18 C23 RIR sing 426 n n 
C19 C20 RIR sing 427 n n 
C19 C24 RIR sing 428 n n 
C20 C21 RIR doub 429 n n 
C20 C25 RIR sing 430 n n 
C21 C26 RIR sing 431 n n 
C22 H1 RIR sing 432 n n 
C22 H2 RIR sing 433 n n 
C22 H3 RIR sing 434 n n 
C23 H4 RIR sing 435 n n 
C23 H5 RIR sing 436 n n 
C23 H6 RIR sing 437 n n 
C24 H7 RIR sing 438 n n 
C24 H8 RIR sing 439 n n 
C24 H9 RIR sing 440 n n 
C25 H10 RIR sing 441 n n 
C25 H11 RIR sing 442 n n 
C25 H12 RIR sing 443 n n 
C26 H13 RIR sing 444 n n 
C26 H14 RIR sing 445 n n 
C26 H15 RIR sing 446 n n 
#
_atom_sites.entry_id                     5OD5 
_atom_sites.fract_transf_matrix[1][1]    0.017639 
_atom_sites.fract_transf_matrix[1][2]    -0.003344 
_atom_sites.fract_transf_matrix[1][3]    -0.004093 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016218 
_atom_sites.fract_transf_matrix[2][3]    -0.00006 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015056 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 FE A 1 401 311 FE FE . 
E 3 IR A 1 402 403 IR IR . 
F 4 95B A 1 403 312 95B CHE . 
G 5 9RT A 1 404 313 9RT CH2 . 
H 6 RIR A 1 405 314 RIR CP2 . 
I 7 PO4 A 1 406 2 PO4 PO4 . 
J 8 7PG B 1 401 1 7PG P7G . 
K 2 FE B 1 402 311 FE FE . 
L 3 IR B 1 403 401 IR IR . 
M 3 IR B 1 404 403 IR IR . 
N 3 IR B 1 405 405 IR IR . 
O 7 PO4 B 1 406 4 PO4 PO4 . 
P 2 FE C 1 401 311 FE FE . 
Q 3 IR C 1 402 403 IR IR . 
R 3 IR C 1 403 404 IR IR . 
S 4 95B C 1 404 312 95B CHE . 
T 5 9RT C 1 405 313 9RT CH2 . 
U 6 RIR C 1 406 314 RIR CP2 . 
V 7 PO4 C 1 407 1 PO4 PO4 . 
W 9 HOH A 1 501 80 HOH HOH . 
W 9 HOH A 2 502 71 HOH HOH . 
W 9 HOH A 3 503 51 HOH HOH . 
W 9 HOH A 4 504 7 HOH HOH . 
W 9 HOH A 5 505 121 HOH HOH . 
W 9 HOH A 6 506 54 HOH HOH . 
W 9 HOH A 7 507 38 HOH HOH . 
W 9 HOH A 8 508 95 HOH HOH . 
W 9 HOH A 9 509 82 HOH HOH . 
W 9 HOH A 10 510 111 HOH HOH . 
W 9 HOH A 11 511 120 HOH HOH . 
W 9 HOH A 12 512 5 HOH HOH . 
W 9 HOH A 13 513 81 HOH HOH . 
W 9 HOH A 14 514 25 HOH HOH . 
W 9 HOH A 15 515 36 HOH HOH . 
W 9 HOH A 16 516 119 HOH HOH . 
W 9 HOH A 17 517 50 HOH HOH . 
W 9 HOH A 18 518 91 HOH HOH . 
W 9 HOH A 19 519 22 HOH HOH . 
W 9 HOH A 20 520 2 HOH HOH . 
W 9 HOH A 21 521 101 HOH HOH . 
W 9 HOH A 22 522 83 HOH HOH . 
W 9 HOH A 23 523 68 HOH HOH . 
W 9 HOH A 24 524 79 HOH HOH . 
W 9 HOH A 25 525 23 HOH HOH . 
W 9 HOH A 26 526 62 HOH HOH . 
W 9 HOH A 27 527 44 HOH HOH . 
W 9 HOH A 28 528 114 HOH HOH . 
W 9 HOH A 29 529 60 HOH HOH . 
W 9 HOH A 30 530 76 HOH HOH . 
W 9 HOH A 31 531 24 HOH HOH . 
W 9 HOH A 32 532 89 HOH HOH . 
W 9 HOH A 33 533 106 HOH HOH . 
W 9 HOH A 34 534 85 HOH HOH . 
W 9 HOH A 35 535 109 HOH HOH . 
X 9 HOH B 1 501 56 HOH HOH . 
X 9 HOH B 2 502 104 HOH HOH . 
X 9 HOH B 3 503 61 HOH HOH . 
X 9 HOH B 4 504 43 HOH HOH . 
X 9 HOH B 5 505 9 HOH HOH . 
X 9 HOH B 6 506 48 HOH HOH . 
X 9 HOH B 7 507 19 HOH HOH . 
X 9 HOH B 8 508 117 HOH HOH . 
X 9 HOH B 9 509 57 HOH HOH . 
X 9 HOH B 10 510 35 HOH HOH . 
X 9 HOH B 11 511 118 HOH HOH . 
X 9 HOH B 12 512 108 HOH HOH . 
X 9 HOH B 13 513 46 HOH HOH . 
X 9 HOH B 14 514 102 HOH HOH . 
X 9 HOH B 15 515 8 HOH HOH . 
X 9 HOH B 16 516 52 HOH HOH . 
X 9 HOH B 17 517 30 HOH HOH . 
X 9 HOH B 18 518 116 HOH HOH . 
X 9 HOH B 19 519 66 HOH HOH . 
X 9 HOH B 20 520 74 HOH HOH . 
X 9 HOH B 21 521 73 HOH HOH . 
Y 9 HOH C 1 501 69 HOH HOH . 
Y 9 HOH C 2 502 75 HOH HOH . 
Y 9 HOH C 3 503 34 HOH HOH . 
Y 9 HOH C 4 504 88 HOH HOH . 
Y 9 HOH C 5 505 107 HOH HOH . 
Y 9 HOH C 6 506 96 HOH HOH . 
Y 9 HOH C 7 507 103 HOH HOH . 
Y 9 HOH C 8 508 4 HOH HOH . 
Y 9 HOH C 9 509 42 HOH HOH . 
Y 9 HOH C 10 510 58 HOH HOH . 
Y 9 HOH C 11 511 47 HOH HOH . 
Y 9 HOH C 12 512 87 HOH HOH . 
Y 9 HOH C 13 513 28 HOH HOH . 
Y 9 HOH C 14 514 11 HOH HOH . 
Y 9 HOH C 15 515 93 HOH HOH . 
Y 9 HOH C 16 516 12 HOH HOH . 
Y 9 HOH C 17 517 1 HOH HOH . 
Y 9 HOH C 18 518 67 HOH HOH . 
Y 9 HOH C 19 519 14 HOH HOH . 
Y 9 HOH C 20 520 97 HOH HOH . 
Y 9 HOH C 21 521 78 HOH HOH . 
Y 9 HOH C 22 522 3 HOH HOH . 
Y 9 HOH C 23 523 49 HOH HOH . 
Y 9 HOH C 24 524 18 HOH HOH . 
Y 9 HOH C 25 525 45 HOH HOH . 
Y 9 HOH C 26 526 29 HOH HOH . 
Y 9 HOH C 27 527 6 HOH HOH . 
Y 9 HOH C 28 528 16 HOH HOH . 
Y 9 HOH C 29 529 31 HOH HOH . 
Y 9 HOH C 30 530 20 HOH HOH . 
Y 9 HOH C 31 531 21 HOH HOH . 
Y 9 HOH C 32 532 72 HOH HOH . 
Y 9 HOH C 33 533 90 HOH HOH . 
Y 9 HOH C 34 534 105 HOH HOH . 
Y 9 HOH C 35 535 32 HOH HOH . 
Y 9 HOH C 36 536 59 HOH HOH . 
Y 9 HOH C 37 537 13 HOH HOH . 
Y 9 HOH C 38 538 63 HOH HOH . 
Y 9 HOH C 39 539 55 HOH HOH . 
Y 9 HOH C 40 540 64 HOH HOH . 
Y 9 HOH C 41 541 110 HOH HOH . 
Y 9 HOH C 42 542 39 HOH HOH . 
Y 9 HOH C 43 543 17 HOH HOH . 
Y 9 HOH C 44 544 10 HOH HOH . 
Y 9 HOH C 45 545 115 HOH HOH . 
Y 9 HOH C 46 546 15 HOH HOH . 
Y 9 HOH C 47 547 99 HOH HOH . 
Y 9 HOH C 48 548 33 HOH HOH . 
Y 9 HOH C 49 549 86 HOH HOH . 
Y 9 HOH C 50 550 70 HOH HOH . 
Y 9 HOH C 51 551 98 HOH HOH . 
Y 9 HOH C 52 552 37 HOH HOH . 
Y 9 HOH C 53 553 92 HOH HOH . 
Y 9 HOH C 54 554 122 HOH HOH . 
Y 9 HOH C 55 555 100 HOH HOH . 
Y 9 HOH C 56 556 77 HOH HOH . 
Y 9 HOH C 57 557 84 HOH HOH . 
Y 9 HOH C 58 558 112 HOH HOH . 
Y 9 HOH C 59 559 40 HOH HOH . 
Y 9 HOH C 60 560 26 HOH HOH . 
Y 9 HOH C 61 561 113 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 IR IR1 RIR . . . U 6 39.637 28.32 11.074 0.63 43.63 ? IR1 RIR 406 C 1 
HETATM 2 C C17 RIR . . . U 6 41.153 27.383 10.131 0.64 49.68 ? C17 RIR 406 C 1 
HETATM 3 C C18 RIR . . . U 6 40.004 26.623 10.05 0.64 49.15 ? C18 RIR 406 C 1 
HETATM 4 C C19 RIR . . . U 6 39.617 26.306 11.315 0.64 45.6 ? C19 RIR 406 C 1 
HETATM 5 C C20 RIR . . . U 6 40.513 26.866 12.19 0.64 49.28 ? C20 RIR 406 C 1 
HETATM 6 C C21 RIR . . . U 6 41.462 27.529 11.457 0.64 53.33 ? C21 RIR 406 C 1 
HETATM 7 C C22 RIR . . . U 6 41.966 27.93 8.991 0.64 54.37 ? C22 RIR 406 C 1 
HETATM 8 C C23 RIR . . . U 6 39.323 26.163 8.792 0.64 53.25 ? C23 RIR 406 C 1 
HETATM 9 C C24 RIR . . . U 6 38.425 25.465 11.687 0.64 52.91 ? C24 RIR 406 C 1 
HETATM 10 C C25 RIR . . . U 6 40.482 26.772 13.685 0.64 44.79 ? C25 RIR 406 C 1 
HETATM 11 C C26 RIR . . . U 6 42.645 28.275 12.007 0.64 51.12 ? C26 RIR 406 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           347 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           11 
#