data_5ODG # _model_server_result.job_id sNi8PFAZLRGv7JHTs6Ws7w _model_server_result.datetime_utc '2024-11-23 10:45:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5odg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 5ODG # _exptl.entry_id 5ODG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ODG _cell.length_a 104.99 _cell.length_b 104.99 _cell.length_c 72.49 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ODG _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,H,J,K 1 1 B,G,I 1 2 B,G,I 2 1 A,C,D,E,F,H,J,K 2 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 -y+1/2,x,z+3/4 0 -1 0 1 0 0 0 0 1 52.495 0 54.3675 3 'crystal symmetry operation' 8_554 y,-x+1/2,z-3/4 0 1 0 -1 0 0 0 0 1 0 52.495 -54.3675 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 57 A CYS 64 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc2 A SG CYS 102 A CYS 109 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc3 A SG CYS 114 A CYS 121 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc4 A ND1 HIS 119 A HIS 126 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc5 B SG CYS 57 B CYS 64 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc6 B SG CYS 102 B CYS 109 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc7 B SG CYS 114 B CYS 121 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc8 B ND1 HIS 119 B HIS 126 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? hydrog WATSON-CRICK hydrog1 C N1 DA 4 D DA 4 1_555 D N3 DT 13 E DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N6 DA 4 D DA 4 1_555 D O4 DT 13 E DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C N1 DG 5 D DG 5 1_555 D N3 DC 12 E DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N2 DG 5 D DG 5 1_555 D O2 DC 12 E DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C O6 DG 5 D DG 5 1_555 D N4 DC 12 E DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N1 DG 6 D DG 6 1_555 D N3 DC 11 E DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C N2 DG 6 D DG 6 1_555 D O2 DC 11 E DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C O6 DG 6 D DG 6 1_555 D N4 DC 11 E DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N3 DC 7 D DC 7 1_555 D N1 DG 10 E DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N4 DC 7 D DC 7 1_555 D O6 DG 10 E DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C O2 DC 7 D DC 7 1_555 D N2 DG 10 E DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C N3 DT 8 D DT 8 1_555 D N1 DA 9 E DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C O4 DT 8 D DT 8 1_555 D N6 DA 9 E DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N1 DA 9 D DA 9 1_555 D N3 DT 8 E DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C N6 DA 9 D DA 9 1_555 D O4 DT 8 E DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C N1 DG 10 D DG 10 1_555 D N3 DC 7 E DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N2 DG 10 D DG 10 1_555 D O2 DC 7 E DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C O6 DG 10 D DG 10 1_555 D N4 DC 7 E DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C N3 DC 11 D DC 11 1_555 D N1 DG 6 E DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C N4 DC 11 D DC 11 1_555 D O6 DG 6 E DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C O2 DC 11 D DC 11 1_555 D N2 DG 6 E DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C N3 DC 12 D DC 12 1_555 D N1 DG 5 E DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C N4 DC 12 D DC 12 1_555 D O6 DG 5 E DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C O2 DC 12 D DC 12 1_555 D N2 DG 5 E DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C N3 DT 13 D DT 13 1_555 D N1 DA 4 E DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C O4 DT 13 D DT 13 1_555 D N6 DA 4 E DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C N1 DG 14 D DG 14 1_555 D N3 DC 3 E DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C N2 DG 14 D DG 14 1_555 D O2 DC 3 E DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C O6 DG 14 D DG 14 1_555 D N4 DC 3 E DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 C N3 DC 15 D DC 15 1_555 D N1 DG 2 E DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 C N4 DC 15 D DC 15 1_555 D O6 DG 2 E DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C O2 DC 15 D DC 15 1_555 D N2 DG 2 E DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog33 C N1 DA 16 D DA 16 1_555 D N3 DT 1 E DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5ODG _atom_sites.fract_transf_matrix[1][1] 0.009525 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009525 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013795 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 201 1 ZN ZN . F 4 CL A 1 202 1 CL CL . G 3 ZN B 1 201 2 ZN ZN . H 5 HOH A 1 301 13 HOH HOH . H 5 HOH A 2 302 9 HOH HOH . H 5 HOH A 3 303 1 HOH HOH . H 5 HOH A 4 304 26 HOH HOH . H 5 HOH A 5 305 11 HOH HOH . H 5 HOH A 6 306 10 HOH HOH . H 5 HOH A 7 307 36 HOH HOH . H 5 HOH A 8 308 32 HOH HOH . H 5 HOH A 9 309 62 HOH HOH . H 5 HOH A 10 310 54 HOH HOH . H 5 HOH A 11 311 8 HOH HOH . H 5 HOH A 12 312 29 HOH HOH . H 5 HOH A 13 313 34 HOH HOH . H 5 HOH A 14 314 78 HOH HOH . H 5 HOH A 15 315 27 HOH HOH . H 5 HOH A 16 316 57 HOH HOH . H 5 HOH A 17 317 23 HOH HOH . H 5 HOH A 18 318 24 HOH HOH . H 5 HOH A 19 319 5 HOH HOH . H 5 HOH A 20 320 33 HOH HOH . H 5 HOH A 21 321 56 HOH HOH . H 5 HOH A 22 322 77 HOH HOH . H 5 HOH A 23 323 35 HOH HOH . H 5 HOH A 24 324 58 HOH HOH . H 5 HOH A 25 325 12 HOH HOH . H 5 HOH A 26 326 7 HOH HOH . H 5 HOH A 27 327 31 HOH HOH . H 5 HOH A 28 328 51 HOH HOH . H 5 HOH A 29 329 2 HOH HOH . H 5 HOH A 30 330 21 HOH HOH . H 5 HOH A 31 331 55 HOH HOH . H 5 HOH A 32 332 20 HOH HOH . H 5 HOH A 33 333 3 HOH HOH . H 5 HOH A 34 334 53 HOH HOH . H 5 HOH A 35 335 52 HOH HOH . H 5 HOH A 36 336 80 HOH HOH . H 5 HOH A 37 337 81 HOH HOH . H 5 HOH A 38 338 22 HOH HOH . I 5 HOH B 1 301 18 HOH HOH . I 5 HOH B 2 302 38 HOH HOH . I 5 HOH B 3 303 17 HOH HOH . I 5 HOH B 4 304 79 HOH HOH . I 5 HOH B 5 305 6 HOH HOH . I 5 HOH B 6 306 64 HOH HOH . I 5 HOH B 7 307 66 HOH HOH . I 5 HOH B 8 308 46 HOH HOH . I 5 HOH B 9 309 48 HOH HOH . I 5 HOH B 10 310 45 HOH HOH . I 5 HOH B 11 311 25 HOH HOH . I 5 HOH B 12 312 37 HOH HOH . I 5 HOH B 13 313 42 HOH HOH . I 5 HOH B 14 314 15 HOH HOH . I 5 HOH B 15 315 4 HOH HOH . I 5 HOH B 16 316 47 HOH HOH . I 5 HOH B 17 317 59 HOH HOH . I 5 HOH B 18 318 14 HOH HOH . I 5 HOH B 19 319 44 HOH HOH . I 5 HOH B 20 320 43 HOH HOH . I 5 HOH B 21 321 40 HOH HOH . I 5 HOH B 22 322 28 HOH HOH . I 5 HOH B 23 323 63 HOH HOH . I 5 HOH B 24 324 41 HOH HOH . I 5 HOH B 25 325 19 HOH HOH . I 5 HOH B 26 326 65 HOH HOH . I 5 HOH B 27 327 68 HOH HOH . I 5 HOH B 28 328 16 HOH HOH . J 5 HOH D 1 101 69 HOH HOH . J 5 HOH D 2 102 76 HOH HOH . K 5 HOH E 1 101 71 HOH HOH . K 5 HOH E 2 102 30 HOH HOH . K 5 HOH E 3 103 39 HOH HOH . K 5 HOH E 4 104 73 HOH HOH . K 5 HOH E 5 105 49 HOH HOH . K 5 HOH E 6 106 61 HOH HOH . K 5 HOH E 7 107 70 HOH HOH . K 5 HOH E 8 108 60 HOH HOH . K 5 HOH E 9 109 74 HOH HOH . K 5 HOH E 10 110 72 HOH HOH . K 5 HOH E 11 111 67 HOH HOH . K 5 HOH E 12 112 50 HOH HOH . K 5 HOH E 13 113 75 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -0.242 _atom_site.Cartn_y 32.022 _atom_site.Cartn_z -16.32 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.64 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #