data_5OEC # _model_server_result.job_id 4ZrqsxwL4lOHbnuJoEv8KQ _model_server_result.datetime_utc '2024-11-05 00:32:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":901}' # _entry.id 5OEC # _exptl.entry_id 5OEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OEC _cell.length_a 47.822 _cell.length_b 66.993 _cell.length_c 110.987 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 79 A GLN 96 1_555 A N MLY 80 A MLY 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MLY 80 A MLY 97 1_555 A N ILE 81 A ILE 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C ILE 90 A ILE 107 1_555 A N MLY 91 A MLY 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MLY 91 A MLY 108 1_555 A N GLU 92 A GLU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C VAL 145 A VAL 162 1_555 A N MLY 146 A MLY 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A C MLY 146 A MLY 163 1_555 A N MLY 147 A MLY 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C MLY 147 A MLY 164 1_555 A N VAL 148 A VAL 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C LEU 46 B LEU 64 1_555 B N MLY 47 B MLY 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 B C MLY 47 B MLY 65 1_555 B N VAL 48 B VAL 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 B C ASP 144 B ASP 162 1_555 B N MLY 145 B MLY 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C MLY 145 B MLY 163 1_555 B N GLU 146 B GLU 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 B OG1 THR 21 B THR 39 1_555 D MG MG . B MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc2 C O1B GDP . B GDP 900 1_555 D MG MG . B MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc3 D MG MG . B MG 901 1_555 F O HOH . B HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc4 D MG MG . B MG 901 1_555 F O HOH . B HOH 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc5 D MG MG . B MG 901 1_555 F O HOH . B HOH 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc6 D MG MG . B MG 901 1_555 F O HOH . B HOH 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5OEC _atom_sites.fract_transf_matrix[1][1] 0.020911 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014927 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GDP B 1 900 900 GDP GDP . D 4 MG B 1 901 901 MG MG . E 5 HOH A 1 301 29 HOH HOH . E 5 HOH A 2 302 6 HOH HOH . E 5 HOH A 3 303 1 HOH HOH . E 5 HOH A 4 304 3 HOH HOH . E 5 HOH A 5 305 16 HOH HOH . E 5 HOH A 6 306 57 HOH HOH . E 5 HOH A 7 307 25 HOH HOH . E 5 HOH A 8 308 10 HOH HOH . E 5 HOH A 9 309 5 HOH HOH . E 5 HOH A 10 310 45 HOH HOH . E 5 HOH A 11 311 22 HOH HOH . E 5 HOH A 12 312 2 HOH HOH . E 5 HOH A 13 313 12 HOH HOH . E 5 HOH A 14 314 32 HOH HOH . E 5 HOH A 15 315 40 HOH HOH . E 5 HOH A 16 316 43 HOH HOH . E 5 HOH A 17 317 20 HOH HOH . E 5 HOH A 18 318 9 HOH HOH . E 5 HOH A 19 319 4 HOH HOH . E 5 HOH A 20 320 14 HOH HOH . E 5 HOH A 21 321 7 HOH HOH . E 5 HOH A 22 322 34 HOH HOH . E 5 HOH A 23 323 13 HOH HOH . E 5 HOH A 24 324 23 HOH HOH . E 5 HOH A 25 325 46 HOH HOH . E 5 HOH A 26 326 26 HOH HOH . E 5 HOH A 27 327 52 HOH HOH . E 5 HOH A 28 328 55 HOH HOH . E 5 HOH A 29 329 31 HOH HOH . E 5 HOH A 30 330 36 HOH HOH . E 5 HOH A 31 331 33 HOH HOH . E 5 HOH A 32 332 30 HOH HOH . F 5 HOH B 1 1001 39 HOH HOH . F 5 HOH B 2 1002 60 HOH HOH . F 5 HOH B 3 1003 27 HOH HOH . F 5 HOH B 4 1004 28 HOH HOH . F 5 HOH B 5 1005 58 HOH HOH . F 5 HOH B 6 1006 51 HOH HOH . F 5 HOH B 7 1007 15 HOH HOH . F 5 HOH B 8 1008 11 HOH HOH . F 5 HOH B 9 1009 56 HOH HOH . F 5 HOH B 10 1010 59 HOH HOH . F 5 HOH B 11 1011 24 HOH HOH . F 5 HOH B 12 1012 19 HOH HOH . F 5 HOH B 13 1013 44 HOH HOH . F 5 HOH B 14 1014 48 HOH HOH . F 5 HOH B 15 1015 8 HOH HOH . F 5 HOH B 16 1016 21 HOH HOH . F 5 HOH B 17 1017 17 HOH HOH . F 5 HOH B 18 1018 18 HOH HOH . F 5 HOH B 19 1019 49 HOH HOH . F 5 HOH B 20 1020 35 HOH HOH . F 5 HOH B 21 1021 41 HOH HOH . F 5 HOH B 22 1022 37 HOH HOH . F 5 HOH B 23 1023 53 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 10.467 _atom_site.Cartn_y 22.571 _atom_site.Cartn_z 145.233 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.91 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 901 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #